CmoCh04G004000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G004000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase subunit beta
Location	Cmo_Chr04 : 1974229 .. 1976053 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCAGTTTCCTCTCAAGAACTTCAAGTACAAGTTTCTCTACCACAGTTTCTTCGCCCATTGAAATCGCGACATCAATCCGAAACTCCACCAAATTCCGCCGGTTGTTTCTCCCTTGAGACTCGAGGTAGGCCATCGGCGGCGGCGGAGATGGAGAAGAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTTGCCGCTGAGGGCACCAAAGTTAAGGTGAAGATGCTTTTTCTTACTCATGATTTATTGATTGTGTGATTTTTCTTCCGTGGATTTTCTGTTTGGTTGATGAGAAAATCGGTCGGAAAGAAAGTGATGGAATAGTATTGAAGGGGAGTTTTAATGTTCTGATTGGAAATTATATATGAAAAAGCTGTTGGTGAATTTAAAACTTAGATTGGATTGAAACTGTTGTTTTTGGCTGCTTCTATTCGTTTCCCGAGCCCTACTGAATGGATCTTCTTCTTCTTCTTCTTCTTTTGTCTAATAATTGAGAAATGCCGATCTGAATCAGATGAAATCGGCATTTTATTTCCTATGGCAAATGTTAGCAGAGAAGATAGATCTGACCTTTGAATTTTCTCAAAGGATTCTTGAGGCTGAGGCCATAAACTTCCAATTAGAGTCGGTTTGATAGCAATTTTGTTCTGGTTTTCAAGAGGTTATGCAATTTACTCATAGTTTCTTTTGTTTGTGCTATGCGATTTTGAATTTGGGTTGAAATTTACATAACTTCAGATTTTCTCCATAAAATTTCGAACAGTTTCTTCTTAATTACTCAGAGTTGTAATGAGTAACCGATTCAATTCATGTAACAACAAATCAGAGACATGACTCTGGATCAAGAAATGTTCCATGGGTAGATCATAATTAAGGCTCATTTGATAACATTTTTATATCCAATCGATACAGTTTTTTGAAAATCGTGCTTAATTTCTTTTAATTTTCTTAGAATAGTTATGATCTTTTCTTAAGAACATACAAATTCTTAGCTAAATTCTTGCGACACACTTTTTTCTCTTTTCAAAACATGACTTAAAACTTGAATCTAGCTGGTCTTGTCTTAAAGATGTATGATTATGTGTACCAACTTTTGATCAGTAGAAGAGGAACTTGCATTTTAAATGAAGTTTGTATGCAAATCATTAGAAGTTTGACTAGTTGTTCTCCATTTGACAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATGTTGCGACAGGGTGCTTTTGCTGCTTCGCAGCCCCTCGCTCTTCTGTTTCTAAATGGCGAATAGCCTTGATCTGCTACGTCATTTCCTGGTACTCTTCACTTGTTTGTAGCATTTTTCCATACCCTTTTCTTGGACCAACAACATTAGCTTAATTTCCTGTGCAGGATTACATTTGCGAAAGCGTTCATCATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTACTGTGGCTACCATTGTGGCCACGATGAGCATAGTGCTGGGATTGACCTATTACATCCTATTGAACTCAGCAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACAGAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGA

mRNA sequence

CTTTCAGTTTCCTCTCAAGAACTTCAAGTACAAGTTTCTCTACCACAGTTTCTTCGCCCATTGAAATCGCGACATCAATCCGAAACTCCACCAAATTCCGCCGGTTGTTTCTCCCTTGAGACTCGAGGTAGGCCATCGGCGGCGGCGGAGATGGAGAAGAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTTGCCGCTGAGGGCACCAAAGTTAAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATGTTGCGACAGGGTGCTTTTGCTGCTTCGCAGCCCCTCGCTCTTCTGTTTCTAAATGGCGAATAGCCTTGATCTGCTACGTCATTTCCTGGTACTCTTCACTTCTTAATTTCCTGTGCAGGATTACATTTGCGAAAGCGTTCATCATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTACTGTGGCTACCATTGTGGCCACGATGAGCATAGTGCTGGGATTGACCTATTACATCCTATTGAACTCAGCAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACAGAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGA

Coding sequence (CDS)

ATGGAGAAGAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTTGCCGCTGAGGGCACCAAAGTTAAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATGTTGCGACAGGGTGCTTTTGCTGCTTCGCAGCCCCTCGCTCTTCTGTTTCTAAATGGCGAATAGCCTTGATCTGCTACGTCATTTCCTGGTACTCTTCACTTCTTAATTTCCTGTGCAGGATTACATTTGCGAAAGCGTTCATCATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTACTGTGGCTACCATTGTGGCCACGATGAGCATAGTGCTGGGATTGACCTATTACATCCTATTGAACTCAGCAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACAGAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGA

Homology

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BLAST of CmoCh04G004000 vs. TrEMBL
Match: A0A0A0KU80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-60
Identity = 131/225 (58.22%), Postives = 162/225 (72.00%), Query Frame = 1


Query: 3   KKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAALSL 62
           K AL+V  VV  LG+++IATGFAAE T+ K N V  V    CKYP+SPA+GLGL AALSL
Sbjct: 4   KSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAALSL 63

Query: 63  LLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIMLLT 122
           L A IT+  +TGC CC   PR   SKWR A+IC+ ISW          +T+  AF++ LT
Sbjct: 64  LFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISW----------VTYVIAFLLFLT 123

Query: 123 GAALNDQRGEQ-SYFLGY-CYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPS-VF 182
           GAALN+ RGEQ +YF  Y CYVL+ G F+ ATIV   S+ LG++Y+++LNSA+ +PS V+
Sbjct: 124 GAALNNGRGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVW 183

Query: 183 GNPCIPPQANIAMGQPQF---PPPPQRSADPVFVPEDTYMRRQFT 222
           G+P +PPQ NIAM QPQF   PPPPQR+ADPVFV EDTYMRRQFT
Sbjct: 184 GHPSVPPQPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

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BLAST of CmoCh04G004000 vs. TrEMBL
Match: A0A067EBD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.6e-55
Identity = 117/223 (52.47%), Postives = 154/223 (69.06%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME+K L + + V  LGLL  ATGF AE T++K + V + + T C YP+SPA+GLGL AAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIML 120
           SLL+A +T+NVATGC CC   P  S S W IAL+C+V+SW+          TF  AF++L
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWF----------TFVIAFLLL 120

Query: 121 LTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPSV 180
           LTGAALNDQ GE+S + G  YCYV++ G F    +++  S+ LG+ YY+ L+SA+    +
Sbjct: 121 LTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GL 180

Query: 181 FGNPCIPPQANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
           +GN  +P +  IAMGQPQF  PPQR+ +PVFV EDTYMRRQFT
Sbjct: 181 WGNSSVPQEGGIAMGQPQF--PPQRTQEPVFVHEDTYMRRQFT 210

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BLAST of CmoCh04G004000 vs. TrEMBL
Match: A0A0B0MRY5_GOSAR (DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_26197 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-52
Identity = 119/224 (53.12%), Postives = 150/224 (66.96%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME+K LV+ +VV FLG+L  ATGFAAE T++K + V  V+ T C YP+SPA+GLGL AA 
Sbjct: 1   MERKGLVLCSVVAFLGVLSAATGFAAEATRIKASEVKFVSTTQCSYPRSPALGLGLTAAA 60

Query: 61  SLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIML 120
           +LL+AHI +N+ TGC CC    RS  S W  AL+ YVISW+          TF  AF++L
Sbjct: 61  ALLVAHIIINIPTGCICCKRTSRSWNSYWTKALVFYVISWF----------TFVIAFLLL 120

Query: 121 LTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPSV 180
           LTG+ALNDQ GE+S + G  YCYV++ G F    I+A  S+V G+ YY+ LN+A+     
Sbjct: 121 LTGSALNDQHGEESVYFGNYYCYVVKPGVFAGGAILAIASVVFGIFYYLTLNTAKNTSEP 180

Query: 181 FGNPCIPPQ-ANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
           +GN  +P Q   IAMGQPQF  P Q S DPVFV EDTY RRQFT
Sbjct: 181 WGNSAVPNQGGGIAMGQPQF--PTQTSQDPVFVHEDTYNRRQFT 212

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BLAST of CmoCh04G004000 vs. TrEMBL
Match: A0A0D2QFW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G051400 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.7e-52
Identity = 118/224 (52.68%), Postives = 150/224 (66.96%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME+K LV+ +VV FLG+L  ATGFAAE T++K + V  V+ T C YP+SPA+GLGL AA 
Sbjct: 1   MERKGLVLCSVVAFLGVLSAATGFAAEATRIKASEVKFVSTTQCSYPRSPALGLGLTAAA 60

Query: 61  SLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIML 120
           +LL+AHI +N+ TGC CC    RS  S W  AL+ YVISW+          TF  AF++L
Sbjct: 61  ALLVAHIIINIPTGCICCKRTSRSWNSYWTKALVFYVISWF----------TFVIAFLLL 120

Query: 121 LTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPSV 180
           LTG+ALNDQ GE+S + G  YCYV++ G F    ++A  S+V G+ YY+ LN+A+     
Sbjct: 121 LTGSALNDQHGEESVYFGNYYCYVVKPGVFAGGAVLAIASVVFGIFYYLTLNTAKNTSDP 180

Query: 181 FGNPCIPPQ-ANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
           +GN  +P Q   IAMGQPQF  P Q S DPVFV EDTY RRQFT
Sbjct: 181 WGNSAVPNQGGGIAMGQPQF--PTQTSQDPVFVHEDTYNRRQFT 212

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BLAST of CmoCh04G004000 vs. TrEMBL
Match: A0A061EZX5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025365 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51
Identity = 112/223 (50.22%), Postives = 151/223 (67.71%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME+KA+V+  VV FLG+L   TGFAAE T+++ + V  ++ T C+YP+SPA+GLGL AA+
Sbjct: 1   MERKAIVLCNVVGFLGILSAVTGFAAEATRIQASQVKFISPTQCQYPRSPALGLGLTAAV 60

Query: 61  SLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIML 120
           +LL+A I +N ATGC CC    ++  S W  AL+ YV+SW+          TF  AF++L
Sbjct: 61  ALLIAQIIINSATGCICCKRTRQTWNSNWTKALVFYVVSWF----------TFVIAFLLL 120

Query: 121 LTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPSV 180
           LTG+ALNDQ GE+S + G  YCYV++ G F    ++A  S+ LG+ YY+ +N A+     
Sbjct: 121 LTGSALNDQHGEESVYFGNYYCYVVKPGVFAGGAVLALASVTLGIFYYLTVNMAKDSTGP 180

Query: 181 FGNPCIPPQANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
           +GN  +P Q  IAMGQPQF  PPQ S DPVFV EDTY+RRQFT
Sbjct: 181 WGNAPVPNQGGIAMGQPQF--PPQSSQDPVFVHEDTYIRRQFT 211

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BLAST of CmoCh04G004000 vs. TAIR10
Match: AT5G17210.1 (AT5G17210.1 Protein of unknown function (DUF1218))

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-41
Identity = 97/226 (42.92%), Postives = 138/226 (61.06%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVV---NRTTCKYPKSPAVGLGLV 60
           ME++ +V+  V+  LGLL   T F AE T++K + V V    + T C YP+SPA  LG  
Sbjct: 1   MERRKIVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFT 60

Query: 61  AALSLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAF 120
           +AL L++A I ++V++GCFCC   P  S S W I+LIC+V+SW+          TF  AF
Sbjct: 61  SALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWF----------TFVIAF 120

Query: 121 IMLLTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETE 180
           ++LL+GAALND+  E+S   G  +CY+++ G F+   +++ ++I LG+ YY+ L S +  
Sbjct: 121 LVLLSGAALNDEHTEESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQI 180

Query: 181 PSVFGNPCIPPQANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
            +            IAMGQPQ P   +R  DPVFV EDTYMRRQFT
Sbjct: 181 VAA----TTTQGTGIAMGQPQIP---ERVEDPVFVHEDTYMRRQFT 209

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BLAST of CmoCh04G004000 vs. NCBI nr
Match: gi|449458299|ref|XP_004146885.1| (PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 2.4e-60
Identity = 131/225 (58.22%), Postives = 162/225 (72.00%), Query Frame = 1


Query: 3   KKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAALSL 62
           K AL+V  VV  LG+++IATGFAAE T+ K N V  V    CKYP+SPA+GLGL AALSL
Sbjct: 4   KSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAALSL 63

Query: 63  LLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIMLLT 122
           L A IT+  +TGC CC   PR   SKWR A+IC+ ISW          +T+  AF++ LT
Sbjct: 64  LFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISW----------VTYVIAFLLFLT 123

Query: 123 GAALNDQRGEQ-SYFLGY-CYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPS-VF 182
           GAALN+ RGEQ +YF  Y CYVL+ G F+ ATIV   S+ LG++Y+++LNSA+ +PS V+
Sbjct: 124 GAALNNGRGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVW 183

Query: 183 GNPCIPPQANIAMGQPQF---PPPPQRSADPVFVPEDTYMRRQFT 222
           G+P +PPQ NIAM QPQF   PPPPQR+ADPVFV EDTYMRRQFT
Sbjct: 184 GHPSVPPQPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

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BLAST of CmoCh04G004000 vs. NCBI nr
Match: gi|659107725|ref|XP_008453825.1| (PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 2.1e-56
Identity = 128/230 (55.65%), Postives = 160/230 (69.57%), Query Frame = 1


Query: 1   MEKKA-LVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAA 60
           ME+KA LVV  VV FLG+++IATGFAAE T+ K   V  V    CKYP+SPA+GLG  AA
Sbjct: 1   MERKAALVVKFVVAFLGIVMIATGFAAEATRTKGKQVTRVAPDVCKYPRSPAMGLGFTAA 60

Query: 61  LSLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIM 120
           LSLL A IT+  +TGC CC   PR    KWR A+IC+ +SW          IT+  AF++
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRP--PKWRTAVICFTVSW----------ITYVIAFLL 120

Query: 121 LLTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPS 180
            LTGAALN+ R +Q  +LG   CYVL+ G F+ ATIV   S+ LG++Y+++LNSA+ +PS
Sbjct: 121 FLTGAALNNGRDQQRNYLGNYECYVLKPGVFSFATIVGVASLTLGMSYFLILNSAKNDPS 180

Query: 181 -VFGNPCIPPQANIAMGQPQF-----PPPPQRSADPVFVPEDTYMRRQFT 222
            V+G+P +PPQ NIAM QPQF     PPPPQR+ DPVFV EDTYMRRQFT
Sbjct: 181 TVWGHPSVPPQPNIAMAQPQFPNPPPPPPPQRTTDPVFVHEDTYMRRQFT 218

[Close]

BLAST of CmoCh04G004000 vs. NCBI nr
Match: gi|641833512|gb|KDO52524.1| (hypothetical protein CISIN_1g028344mg [Citrus sinensis])

HSP 1 Score: 222.6 bits (566), Expect = 6.7e-55
Identity = 117/223 (52.47%), Postives = 154/223 (69.06%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME+K L + + V  LGLL  ATGF AE T++K + V + + T C YP+SPA+GLGL AAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIML 120
           SLL+A +T+NVATGC CC   P  S S W IAL+C+V+SW+          TF  AF++L
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWF----------TFVIAFLLL 120

Query: 121 LTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPSV 180
           LTGAALNDQ GE+S + G  YCYV++ G F    +++  S+ LG+ YY+ L+SA+    +
Sbjct: 121 LTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GL 180

Query: 181 FGNPCIPPQANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
           +GN  +P +  IAMGQPQF  PPQR+ +PVFV EDTYMRRQFT
Sbjct: 181 WGNSSVPQEGGIAMGQPQF--PPQRTQEPVFVHEDTYMRRQFT 210

[Close]

BLAST of CmoCh04G004000 vs. NCBI nr
Match: gi|568877605|ref|XP_006491818.1| (PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis])

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 116/223 (52.02%), Postives = 154/223 (69.06%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME+K L + + V  LGLL  ATGF AE T++K + V + + T C YP+SPA+GLGL AAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIML 120
           SLL+A +T+NVATGC CC   P  S S W IAL+C+V+SW+          TF  AF++L
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWF----------TFVIAFLLL 120

Query: 121 LTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPSV 180
           LTGAALNDQ GE+S + G  YCYV++ G F    +++  S+ LG+ YY+ L+SA+    +
Sbjct: 121 LTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GL 180

Query: 181 FGNPCIPPQANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
           +GN  +P +  IAMGQPQF  PPQR+ +PVFV EDT+MRRQFT
Sbjct: 181 WGNSSVPQEGGIAMGQPQF--PPQRTQEPVFVHEDTFMRRQFT 210

[Close]

BLAST of CmoCh04G004000 vs. NCBI nr
Match: gi|728816797|gb|KHG02244.1| (DNA-directed RNA polymerase subunit beta [Gossypium arboreum])

HSP 1 Score: 213.4 bits (542), Expect = 4.0e-52
Identity = 119/224 (53.12%), Postives = 150/224 (66.96%), Query Frame = 1


Query: 1   MEKKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME+K LV+ +VV FLG+L  ATGFAAE T++K + V  V+ T C YP+SPA+GLGL AA 
Sbjct: 1   MERKGLVLCSVVAFLGVLSAATGFAAEATRIKASEVKFVSTTQCSYPRSPALGLGLTAAA 60

Query: 61  SLLLAHITLNVATGCFCCFAAPRSSVSKWRIALICYVISWYSSLLNFLCRITFAKAFIML 120
           +LL+AHI +N+ TGC CC    RS  S W  AL+ YVISW+          TF  AF++L
Sbjct: 61  ALLVAHIIINIPTGCICCKRTSRSWNSYWTKALVFYVISWF----------TFVIAFLLL 120

Query: 121 LTGAALNDQRGEQSYFLG--YCYVLRSGFFTVATIVATMSIVLGLTYYILLNSAETEPSV 180
           LTG+ALNDQ GE+S + G  YCYV++ G F    I+A  S+V G+ YY+ LN+A+     
Sbjct: 121 LTGSALNDQHGEESVYFGNYYCYVVKPGVFAGGAILAIASVVFGIFYYLTLNTAKNTSEP 180

Query: 181 FGNPCIPPQ-ANIAMGQPQFPPPPQRSADPVFVPEDTYMRRQFT 222
           +GN  +P Q   IAMGQPQF  P Q S DPVFV EDTY RRQFT
Sbjct: 181 WGNSAVPNQGGGIAMGQPQF--PTQTSQDPVFVHEDTYNRRQFT 212

The following BLAST results are available for this feature:

BLAST of CmoCh04G004000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G004000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU80_CUCSA	1.6e-60	58.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1	[more]
A0A067EBD4_CITSI	4.6e-55	52.47	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1	[more]
A0A0B0MRY5_GOSAR	2.8e-52	53.13	DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_26197 PE=...	[more]
A0A0D2QFW5_GOSRA	3.7e-52	52.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G051400 PE=4 SV=1	[more]
A0A061EZX5_THECC	2.4e-51	50.22	Uncharacterized protein OS=Theobroma cacao GN=TCM_025365 PE=4 SV=1	[more]

BLAST of CmoCh04G004000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17210.1	1.2e-41	42.92	Protein of unknown function (DUF1218)	[more]

BLAST of CmoCh04G004000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458299\|ref\|XP_004146885.1\|	2.4e-60	58.22	PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus]	[more]
gi\|659107725\|ref\|XP_008453825.1\|	2.1e-56	55.65	PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo]	[more]
gi\|641833512\|gb\|KDO52524.1\|	6.7e-55	52.47	hypothetical protein CISIN_1g028344mg [Citrus sinensis]	[more]
gi\|568877605\|ref\|XP_006491818.1\|	1.9e-54	52.02	PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis]	[more]
gi\|728816797\|gb\|KHG02244.1\|	4.0e-52	53.13	DNA-directed RNA polymerase subunit beta [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G004000.1	CmoCh04G004000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 58..158 score: 1.9
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 1..220 score: 4.8
None	No IPR available	PANTHER	PTHR31769:SF8	SUBFAMILY NOT NAMED	coord: 1..220 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G004000	Cucsa.093840	Cucumber (Gy14) v1	cgycmoB0197
CmoCh04G004000	CmaCh04G003790	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G004000	CmaCh16G002360	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G004000	Cla010685	Watermelon (97103) v1	cmowmB687
CmoCh04G004000	Csa4G025740	Cucumber (Chinese Long) v2	cmocuB700
CmoCh04G004000	MELO3C017618	Melon (DHL92) v3.5.1	cmomeB694
CmoCh04G004000	ClCG01G005010	Watermelon (Charleston Gray)	cmowcgB639
CmoCh04G004000	ClCG07G017290	Watermelon (Charleston Gray)	cmowcgB671
CmoCh04G004000	CSPI04G04390	Wild cucumber (PI 183967)	cmocpiB708
CmoCh04G004000	Lsi07G001450	Bottle gourd (USVL1VR-Ls)	cmolsiB690
CmoCh04G004000	Lsi09G005280	Bottle gourd (USVL1VR-Ls)	cmolsiB614
CmoCh04G004000	Cp4.1LG05g07200	Cucurbita pepo (Zucchini)	cmocpeB707
CmoCh04G004000	Cp4.1LG14g05200	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G004000	Cp4.1LG01g03260	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G004000	MELO3C017618.2	Melon (DHL92) v3.6.1	cmomedB788
CmoCh04G004000	CsaV3_4G004490	Cucumber (Chinese Long) v3	cmocucB0828
CmoCh04G004000	CsaV3_5G005270	Cucumber (Chinese Long) v3	cmocucB0871
CmoCh04G004000	Cla97C07G144300	Watermelon (97103) v2	cmowmbB749
CmoCh04G004000	Cla97C01G005240	Watermelon (97103) v2	cmowmbB678
CmoCh04G004000	Bhi01G001973	Wax gourd	cmowgoB0851
CmoCh04G004000	CsGy4G004300	Cucumber (Gy14) v2	cgybcmoB516
CmoCh04G004000	Carg16777	Silver-seed gourd	carcmoB1177
CmoCh04G004000	Carg08475	Silver-seed gourd	carcmoB0972
CmoCh04G004000	Carg08052	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G004000	CmoCh16G002540	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G004000	CmoCh02G010160	Cucurbita moschata (Rifu)	cmocmoB435

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G004000	Wax gourd	cmowgoB0810
CmoCh04G004000	Watermelon (97103) v1	cmowmB654