CmoCh16G002540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G002540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase subunit beta
Location	Cmo_Chr16 : 1133354 .. 1135522 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTACTCCAACCGCCACATCCTCCCCTAATGGAATCCAAATTTCGTAGGAACTTCCTCTTCTTCAGTCATCGGACGCAACGTCACATTTCAGCGCCTGTCAATTTCTCTCTCAATATCTTCTTCTACCGTCTCCGCCACAGGTTCTTCGTATCGAAATCTCGGCCTTAATCCGAAGCTCCACCGAAACACGTAGGTTATTTCTCCCAGTAACTTGCCGGAAACTATCGGCGGCGGCAGAGATGGAGAGAAAGGCTCTGGCGGTGTGCTCCGTAGTCGCTTTTTTGGGGCTTTTGTTGGTCGCTACTGGCTTCGCCGCTGAGGGTACAAGAGTTAAGGTGAGATGCCTTTTCTTAACAATCACGTATTGATTTAGTGATTTTTCTTCGGTGAATTATCTGTTTGGCTGATGAGAAAATCCGTCAGAAAGAATGTGAAAGGATAGCGAGAGGAGATTCATTTTGAATAGCGATTTATAAAAAGAAGTTGTTCGTGAATGGATCTGTTGTTTTTGGCTGCTTCCTTTAAGCTGTATTTGTTTCCAAGCCCTACTGAATTGATCATCTTCTTTGTTTTTGAGGTTGAGGCCATAAACTTCCAATTATATGCAAGCGATTCAAGTAATAGTTAGAGAATTGATAATAATTTGTTTGTGATTTTCTATTTTTAGAAGTTAAGCAAATTGAGTGACAGTTTCTTCACTTTAATTTTGGTTCATAATTAGAATTTGGTTTGGGTTTAAAAAAATTACATAGTTTCCAATTTGTCCCTGAAATTTAAATTTCCTCGAGTTTTAATTTTGAGAGATCCTCGTTATGGTCTTGAGTTGTTTGAAGTTACTAATTCAGGACATAGTTCTTTGGAATTTTGTGTGGGATCCTAGCCTGATCAGTCTGATCATTTTTTCATTTGACAGGGTAATCAAGTCGTTCAAGTCACTCCTACTATGTGCAAATATCCTCAGAGTCCTGCGGCTGCCCTTGGTTTGACAGCAGCTCTGTCTCTTTTGCTTGCTCAGATATTGATAAATGTTTCGACGGGATGCATTTGTTGCACAAGGGGTCCTCGACCTCCCGCTTCTAAATGGAGAACAGCCGTTGTCTGCTTCGTTGTTTCGTGGTACTTTTCGACCCTTCCTTCCTCATTCTAGCTTGCATTTAGTTCATGGCTTGATGCTTGCTGCTTGCTGCTATAATATGAGATGAATTATATGAATGTCGATATCAAAACCCGTTTTCTCAAGATTGCAGGGTTATTCGAATTCTGCTCGGGTTCTTGATGGCTGAGTGTTATGATATTGTTTGTGATTATATGATCTTATTTCTGCTTTGAAACAATTCCATGTTTTTGTTGTCATCTTTTTGGGCTCTTCTGCGTTGTTAATTCATTATGAAAGTTGTGTTAGACTTCTTAATCCATGATCATTACAGTTGAAATGATTGAATCTATTGTTCTTCGTGAATCCCTTTGGTCGAATTATTCCCCGACTAAAAGAAAGATCGATTCCTTGTGTTTGTCGGATAAATCAAGTTTGAGCCATGGTTTTTTTTCTGCAGGTTTACATTTGTGATAGCGTTTCTCCTGTTGCTAACCGGTGCTGCACTGAACGATGGAAGGAATGAACAAAGCAGCTATTTCGATTACTACTATTGCTATGTTCTCAAACCAGGAGTTTTTGCTGTTGCCACCGTTGTGGGTGCTGCAAGTTTAGCGCTGGGATTGTTCTACTACCTCATATTGAACTCTGCAAAGAATGACCCTAATGTGTGGGGCAATCCTTCCATTCCTCCTCCAGCAAACATTGCAATGGCGCAGCCCCAATTCCCGCCCCCGCCCCCGGCTCAACCGACAACTGCAGACCCCGTATTTGTTCATGAAGACACGTACACGAGACGACAGTTCACGTGATCGGTAAGCGTCGGTCGATATCAAATGTGTTTAAGAAAACCATACAACTTATACGACTTGATTGATGTTGTCTTTATAGGAAGTAGCTGTTGTGGACTTGTATAGAACTGAATTGAATTTTTACTTCCCTTTGATCCATGGGAAATAAATAAACTGTAATTGAACAATAAGTTGATTGAAAATATTTTGATATTTGTTTATAGTAAAATACATTTTTATCATTGATGCATTTTATGTGAGACAAAAATGCTATACCCTATCC

mRNA sequence

GTTTACTCCAACCGCCACATCCTCCCCTAATGGAATCCAAATTTCGTAGGAACTTCCTCTTCTTCAGTCATCGGACGCAACGTCACATTTCAGCGCCTGTCAATTTCTCTCTCAATATCTTCTTCTACCGTCTCCGCCACAGGTTCTTCGTATCGAAATCTCGGCCTTAATCCGAAGCTCCACCGAAACACGTAGGTTATTTCTCCCAGTAACTTGCCGGAAACTATCGGCGGCGGCAGAGATGGAGAGAAAGGCTCTGGCGGTGTGCTCCGTAGTCGCTTTTTTGGGGCTTTTGTTGGTCGCTACTGGCTTCGCCGCTGAGGGTACAAGAGTTAAGGGTAATCAAGTCGTTCAAGTCACTCCTACTATGTGCAAATATCCTCAGAGTCCTGCGGCTGCCCTTGGTTTGACAGCAGCTCTGTCTCTTTTGCTTGCTCAGATATTGATAAATGTTTCGACGGGATGCATTTGTTGCACAAGGGGTCCTCGACCTCCCGCTTCTAAATGGAGAACAGCCGTTGTCTGCTTCGTTGTTTCGTGGTTTACATTTGTGATAGCGTTTCTCCTGTTGCTAACCGGTGCTGCACTGAACGATGGAAGGAATGAACAAAGCAGCTATTTCGATTACTACTATTGCTATGTTCTCAAACCAGGAGTTTTTGCTGTTGCCACCGTTGTGGGTGCTGCAAGTTTAGCGCTGGGATTGTTCTACTACCTCATATTGAACTCTGCAAAGAATGACCCTAATGTGTGGGGCAATCCTTCCATTCCTCCTCCAGCAAACATTGCAATGGCGCAGCCCCAATTCCCGCCCCCGCCCCCGGCTCAACCGACAACTGCAGACCCCGTATTTGTTCATGAAGACACGTACACGAGACGACAGTTCACGTGATCGGTAAGCGTCGGTCGATATCAAATGTGTTTAAGAAAACCATACAACTTATACGACTTGATTGATGTTGTCTTTATAGGAAGTAGCTGTTGTGGACTTGTATAGAACTGAATTGAATTTTTACTTCCCTTTGATCCATGGGAAATAAATAAACTGTAATTGAACAATAAGTTGATTGAAAATATTTTGATATTTGTTTATAGTAAAATACATTTTTATCATTGATGCATTTTATGTGAGACAAAAATGCTATACCCTATCC

Coding sequence (CDS)

ATGGAGAGAAAGGCTCTGGCGGTGTGCTCCGTAGTCGCTTTTTTGGGGCTTTTGTTGGTCGCTACTGGCTTCGCCGCTGAGGGTACAAGAGTTAAGGGTAATCAAGTCGTTCAAGTCACTCCTACTATGTGCAAATATCCTCAGAGTCCTGCGGCTGCCCTTGGTTTGACAGCAGCTCTGTCTCTTTTGCTTGCTCAGATATTGATAAATGTTTCGACGGGATGCATTTGTTGCACAAGGGGTCCTCGACCTCCCGCTTCTAAATGGAGAACAGCCGTTGTCTGCTTCGTTGTTTCGTGGTTTACATTTGTGATAGCGTTTCTCCTGTTGCTAACCGGTGCTGCACTGAACGATGGAAGGAATGAACAAAGCAGCTATTTCGATTACTACTATTGCTATGTTCTCAAACCAGGAGTTTTTGCTGTTGCCACCGTTGTGGGTGCTGCAAGTTTAGCGCTGGGATTGTTCTACTACCTCATATTGAACTCTGCAAAGAATGACCCTAATGTGTGGGGCAATCCTTCCATTCCTCCTCCAGCAAACATTGCAATGGCGCAGCCCCAATTCCCGCCCCCGCCCCCGGCTCAACCGACAACTGCAGACCCCGTATTTGTTCATGAAGACACGTACACGAGACGACAGTTCACGTGA

Homology

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BLAST of CmoCh16G002540 vs. TrEMBL
Match: A0A0A0KU80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.7e-82
Identity = 159/218 (72.94%), Postives = 179/218 (82.11%), Query Frame = 1


Query: 1   MERK-ALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAA 60
           MERK AL V  VVA LG++++ATGFAAE TR K NQV +V P +CKYP+SPA  LGLTAA
Sbjct: 1   MERKSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAA 60

Query: 61  LSLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDG 120
           LSLL AQI I  STGC+CC RGPRPPASKWRTAV+CF +SW T+VIAFLL LTGAALN+G
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120

Query: 121 RNEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPN-VWGNPSIPP 180
           R EQ +YF  Y CYVLKPGVF+ AT+VG ASL LG+ Y+LILNSAKNDP+ VWG+PS+PP
Sbjct: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 PANIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
             NIAMAQPQFP PPP    TADPVFVHEDTY RRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

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BLAST of CmoCh16G002540 vs. TrEMBL
Match: A0A067EBD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 7.0e-72
Identity = 143/216 (66.20%), Postives = 161/216 (74.54%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAAL 60
           MERK LA+CS V  LGLL  ATGF AE TR+KG+QV   +PT C YP+SPA  LGLTAAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGR 120
           SLL+AQ+ INV+TGCICC RGP P  S W  A+VCFVVSWFTFVIAFLLLLTGAALND  
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 NEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 180
            E+S YF  YYCYV+KPGVFA   V+  AS+ LG+ YYL L+SAKN   +WGN S+P   
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GLWGNSSVPQEG 180

Query: 181 NIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
            IAM QPQFPP       T +PVFVHEDTY RRQFT
Sbjct: 181 GIAMGQPQFPP-----QRTQEPVFVHEDTYMRRQFT 210

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BLAST of CmoCh16G002540 vs. TrEMBL
Match: A0A068U9S1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019822001 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.5e-69
Identity = 135/214 (63.08%), Postives = 163/214 (76.17%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAAL 60
           MERK + VC VV FLGLL  ATGFAAE TR+KG+QV   +P +C YP+SPA  LGLTAA+
Sbjct: 1   MERKVIVVCCVVGFLGLLSAATGFAAEATRIKGDQVKFPSPDVCVYPRSPALGLGLTAAV 60

Query: 61  SLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGR 120
           +L++AQ+++NV+TGCICC RGP    S W+ A+VCF+VSWFTFV+AFLLLLTGAALND  
Sbjct: 61  TLMIAQVIVNVATGCICCRRGPHQANSNWKLALVCFIVSWFTFVVAFLLLLTGAALNDQH 120

Query: 121 NEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 180
            E++ YF+YYYCYV+KPGVFA A ++  AS+ LGL YY++L S KN  + WG  S P P 
Sbjct: 121 GEENMYFNYYYCYVVKPGVFAGAAILSLASVTLGLIYYVMLTSTKNVIDAWGGSSAPVPG 180

Query: 181 NIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQ 215
            IAM QPQF    PAQ T A PVFVHEDTY RRQ
Sbjct: 181 GIAMGQPQF----PAQNTEA-PVFVHEDTYMRRQ 209

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BLAST of CmoCh16G002540 vs. TrEMBL
Match: A0A067JD79_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00583 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 135/216 (62.50%), Postives = 163/216 (75.46%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAAL 60
           MER+AL +CS V FLGLL  ATGFAAEGTR+KG++V   + T C YP+SPA ALGLT+A+
Sbjct: 1   MERRALFLCSAVGFLGLLSAATGFAAEGTRIKGSEVQFTSATQCTYPRSPAMALGLTSAV 60

Query: 61  SLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGR 120
           +L++AQ++INV+TGCICC R P+P  S W  A+VCFVVSWFTFVIAFLLLLTGAALND  
Sbjct: 61  ALMIAQVIINVATGCICCKRSPQPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 NEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 180
            E+S YF  YYCYV+KPGVFA   V+  AS+ LG+ YYL LNS+K+  + WGNP +    
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSFASITLGILYYLTLNSSKSINSTWGNPPVSSST 180

Query: 181 NIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
            IAM QPQ      +Q  T DP+FVHEDTY RRQFT
Sbjct: 181 GIAMGQPQ----NTSQGGTQDPIFVHEDTYMRRQFT 212

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BLAST of CmoCh16G002540 vs. TrEMBL
Match: M5X117_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011406mg PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.4e-66
Identity = 133/216 (61.57%), Postives = 156/216 (72.22%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAAL 60
           MERK L VC  V  LGLL  ATGF AE TR+KG+QV  V+ T C+YP+SPA  LG+TAA+
Sbjct: 1   MERKVLLVCCAVGLLGLLSAATGFGAEVTRIKGSQVRFVSVTQCEYPRSPALGLGVTAAV 60

Query: 61  SLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGR 120
           +L+LAQI++NVSTGCICC R P+P  S W  A+ CFVVSWFTFVIAFLLLLTGA LND  
Sbjct: 61  ALMLAQIILNVSTGCICCKRSPQPSNSNWTVALFCFVVSWFTFVIAFLLLLTGATLNDRH 120

Query: 121 NEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 180
             +S YF  YYCYV+KPGVF     +  AS+ LG+ YY+ LNS K+  + WG  + P P 
Sbjct: 121 GVESMYFGNYYCYVVKPGVFGGGAGLSLASVVLGIVYYVTLNSVKDSNSPWGTSAPPNPG 180

Query: 181 NIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
            IAM QPQFPPP     TT +PVFVHEDTY RRQFT
Sbjct: 181 AIAMGQPQFPPP----STTQEPVFVHEDTYMRRQFT 212

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BLAST of CmoCh16G002540 vs. TAIR10
Match: AT5G17210.1 (AT5G17210.1 Protein of unknown function (DUF1218))

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-52
Identity = 110/219 (50.23%), Postives = 141/219 (64.38%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQV---VQVTPTMCKYPQSPAAALGLT 60
           MER+ + +C V+  LGLL   T F AE TR+K +QV   V  + T C YP+SPA  LG T
Sbjct: 1   MERRKIVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFT 60

Query: 61  AALSLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALN 120
           +AL L++AQI+++VS+GC CC +GP P  S W  +++CFVVSWFTFVIAFL+LL+GAALN
Sbjct: 61  SALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALN 120

Query: 121 DGRNEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIP 180
           D   E+S     Y+CY++KPGVF+   V+   ++ALG+ YYL L S K         +  
Sbjct: 121 DEHTEESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVAA----TTT 180

Query: 181 PPANIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
               IAM QPQ P          DPVFVHEDTY RRQFT
Sbjct: 181 QGTGIAMGQPQIP------ERVEDPVFVHEDTYMRRQFT 209

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BLAST of CmoCh16G002540 vs. TAIR10
Match: AT1G13380.1 (AT1G13380.1 Protein of unknown function (DUF1218))

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-11
Identity = 48/161 (29.81%), Postives = 75/161 (46.58%), Query Frame = 1


Query: 12  VAFLGLLLVATGF--AAEGTRVKGNQVVQ--VTPTMCKYPQSPAAALGLTAALSLLLAQI 71
           +  + L LVA GF  AAE  R  G  +       T C Y    A   G+ A L LL ++ 
Sbjct: 12  ILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLFLLSSES 71

Query: 72  LINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGRNEQSSYF 131
           L+   T C+C  R P  P S    +++ F+ SW TF++A   ++ GA  N    +  S  
Sbjct: 72  LLMSVTKCMCFGR-PLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTKYLS-S 131

Query: 132 DYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDP 169
             + C  L+ G+F    V   A++ L ++YY+    + + P
Sbjct: 132 QTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKSVSSP 170

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BLAST of CmoCh16G002540 vs. TAIR10
Match: AT1G61065.1 (AT1G61065.1 Protein of unknown function (DUF1218))

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1


Query: 44  CKYPQSPAAALGLTAALSLLLAQILINVSTGCICCTRGPRPPASK-WRTAVVCFVVSWFT 103
           C Y +  A  LG+ + L LL +Q+LI V++ C+CC R   P  S+ W  A+  F+ +W  
Sbjct: 43  CVYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTPSGSRSW--AIFLFITTWVF 102

Query: 104 FVIAFLLLLTGAALNDGRNEQSSYFDYY--YCYVLKPGVFAVATVVGAASLALGLFYYLI 163
           F IA + LL G+  N    +   YF      C  L+ GVF         +  +   YY+ 
Sbjct: 103 FFIAQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVT 162

Query: 164 LNSAKN 167
           L+ AK+
Sbjct: 163 LSRAKD 166

[Close]

BLAST of CmoCh16G002540 vs. TAIR10
Match: AT1G68220.1 (AT1G68220.1 Protein of unknown function (DUF1218))

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-09
Identity = 59/191 (30.89%), Postives = 82/191 (42.93%), Query Frame = 1


Query: 5   ALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQV--TPTMCKYPQSPAAALGLTAALSL 64
           ++++ +VV  L LL     F AE  R     V       T+CKY    +   G++A   L
Sbjct: 4   SVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAFGLL 63

Query: 65  LLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGRNE 124
           L++Q ++N  T C+C  +G     S    A+V FVVSW +F+ A   LL G+A N    +
Sbjct: 64  LVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTK 123

Query: 125 QSSYF--DYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 184
               +      C VL  GVFA        SL   + YYL    +K D   W         
Sbjct: 124 SEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLA--HSKADTGGWEKHQ-NDGI 183

Query: 185 NIAMAQPQFPP 192
           NI M  P   P
Sbjct: 184 NIGMTTPSDAP 191

[Close]

BLAST of CmoCh16G002540 vs. TAIR10
Match: AT4G27435.1 (AT4G27435.1 Protein of unknown function (DUF1218))

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-09
Identity = 48/161 (29.81%), Postives = 72/161 (44.72%), Query Frame = 1


Query: 8   VCSVVAFLGLLLVATGFAAEGTRVKGNQV--VQVTPTMCKYPQSPAAALGLTAALSLLLA 67
           V ++V    L+      AAE  R     V   +V    C Y    A   G+ A L  + +
Sbjct: 6   VSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFLFSVAS 65

Query: 68  QILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGRNEQSS 127
           QILI + + C CC +  +P  S+   A++ F+VSW  F+IA + LL G+  N    +  +
Sbjct: 66  QILIMLVSRCFCCGKPLKPGGSR-ALALILFIVSWMFFLIAEICLLAGSVENAYHTKYRT 125

Query: 128 YF--DYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSA 165
            F  +   C  L+ GVFA        +  +  FYY    SA
Sbjct: 126 MFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSA 165

[Close]

BLAST of CmoCh16G002540 vs. NCBI nr
Match: gi|449458299|ref|XP_004146885.1| (PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 8.2e-82
Identity = 159/218 (72.94%), Postives = 179/218 (82.11%), Query Frame = 1


Query: 1   MERK-ALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAA 60
           MERK AL V  VVA LG++++ATGFAAE TR K NQV +V P +CKYP+SPA  LGLTAA
Sbjct: 1   MERKSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAA 60

Query: 61  LSLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDG 120
           LSLL AQI I  STGC+CC RGPRPPASKWRTAV+CF +SW T+VIAFLL LTGAALN+G
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120

Query: 121 RNEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPN-VWGNPSIPP 180
           R EQ +YF  Y CYVLKPGVF+ AT+VG ASL LG+ Y+LILNSAKNDP+ VWG+PS+PP
Sbjct: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 PANIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
             NIAMAQPQFP PPP    TADPVFVHEDTY RRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

[Close]

BLAST of CmoCh16G002540 vs. NCBI nr
Match: gi|659107725|ref|XP_008453825.1| (PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.4e-78
Identity = 156/220 (70.91%), Postives = 177/220 (80.45%), Query Frame = 1


Query: 1   MERKA-LAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAA 60
           MERKA L V  VVAFLG++++ATGFAAE TR KG QV +V P +CKYP+SPA  LG TAA
Sbjct: 1   MERKAALVVKFVVAFLGIVMIATGFAAEATRTKGKQVTRVAPDVCKYPRSPAMGLGFTAA 60

Query: 61  LSLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDG 120
           LSLL AQI I  STGC+CC RGPRPP  KWRTAV+CF VSW T+VIAFLL LTGAALN+G
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPP--KWRTAVICFTVSWITYVIAFLLFLTGAALNNG 120

Query: 121 RNEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPN-VWGNPSIPP 180
           R++Q +Y   Y CYVLKPGVF+ AT+VG ASL LG+ Y+LILNSAKNDP+ VWG+PS+PP
Sbjct: 121 RDQQRNYLGNYECYVLKPGVFSFATIVGVASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 PANIAMAQPQF--PPPPPAQPTTADPVFVHEDTYTRRQFT 217
             NIAMAQPQF  PPPPP    T DPVFVHEDTY RRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPPPQRTTDPVFVHEDTYMRRQFT 218

[Close]

BLAST of CmoCh16G002540 vs. NCBI nr
Match: gi|641833512|gb|KDO52524.1| (hypothetical protein CISIN_1g028344mg [Citrus sinensis])

HSP 1 Score: 278.5 bits (711), Expect = 1.0e-71
Identity = 143/216 (66.20%), Postives = 161/216 (74.54%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAAL 60
           MERK LA+CS V  LGLL  ATGF AE TR+KG+QV   +PT C YP+SPA  LGLTAAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGR 120
           SLL+AQ+ INV+TGCICC RGP P  S W  A+VCFVVSWFTFVIAFLLLLTGAALND  
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 NEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 180
            E+S YF  YYCYV+KPGVFA   V+  AS+ LG+ YYL L+SAKN   +WGN S+P   
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GLWGNSSVPQEG 180

Query: 181 NIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
            IAM QPQFPP       T +PVFVHEDTY RRQFT
Sbjct: 181 GIAMGQPQFPP-----QRTQEPVFVHEDTYMRRQFT 210

[Close]

BLAST of CmoCh16G002540 vs. NCBI nr
Match: gi|568877605|ref|XP_006491818.1| (PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis])

HSP 1 Score: 276.9 bits (707), Expect = 2.9e-71
Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAAL 60
           MERK LA+CS V  LGLL  ATGF AE TR+KG+QV   +PT C YP+SPA  LGLTAAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGR 120
           SLL+AQ+ INV+TGCICC RGP P  S W  A+VCFVVSWFTFVIAFLLLLTGAALND  
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 NEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 180
            E+S YF  YYCYV+KPGVFA   V+  AS+ LG+ YYL L+SAKN   +WGN S+P   
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GLWGNSSVPQEG 180

Query: 181 NIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQFT 217
            IAM QPQFPP       T +PVFVHEDT+ RRQFT
Sbjct: 181 GIAMGQPQFPP-----QRTQEPVFVHEDTFMRRQFT 210

[Close]

BLAST of CmoCh16G002540 vs. NCBI nr
Match: gi|661891067|emb|CDP04949.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 270.0 bits (689), Expect = 3.6e-69
Identity = 135/214 (63.08%), Postives = 163/214 (76.17%), Query Frame = 1


Query: 1   MERKALAVCSVVAFLGLLLVATGFAAEGTRVKGNQVVQVTPTMCKYPQSPAAALGLTAAL 60
           MERK + VC VV FLGLL  ATGFAAE TR+KG+QV   +P +C YP+SPA  LGLTAA+
Sbjct: 1   MERKVIVVCCVVGFLGLLSAATGFAAEATRIKGDQVKFPSPDVCVYPRSPALGLGLTAAV 60

Query: 61  SLLLAQILINVSTGCICCTRGPRPPASKWRTAVVCFVVSWFTFVIAFLLLLTGAALNDGR 120
           +L++AQ+++NV+TGCICC RGP    S W+ A+VCF+VSWFTFV+AFLLLLTGAALND  
Sbjct: 61  TLMIAQVIVNVATGCICCRRGPHQANSNWKLALVCFIVSWFTFVVAFLLLLTGAALNDQH 120

Query: 121 NEQSSYFDYYYCYVLKPGVFAVATVVGAASLALGLFYYLILNSAKNDPNVWGNPSIPPPA 180
            E++ YF+YYYCYV+KPGVFA A ++  AS+ LGL YY++L S KN  + WG  S P P 
Sbjct: 121 GEENMYFNYYYCYVVKPGVFAGAAILSLASVTLGLIYYVMLTSTKNVIDAWGGSSAPVPG 180

Query: 181 NIAMAQPQFPPPPPAQPTTADPVFVHEDTYTRRQ 215
            IAM QPQF    PAQ T A PVFVHEDTY RRQ
Sbjct: 181 GIAMGQPQF----PAQNTEA-PVFVHEDTYMRRQ 209

The following BLAST results are available for this feature:

BLAST of CmoCh16G002540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G002540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU80_CUCSA	5.7e-82	72.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1	[more]
A0A067EBD4_CITSI	7.0e-72	66.20	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1	[more]
A0A068U9S1_COFCA	2.5e-69	63.08	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019822001 PE=4 SV=1	[more]
A0A067JD79_JATCU	1.2e-68	62.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00583 PE=4 SV=1	[more]
M5X117_PRUPE	3.4e-66	61.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011406mg PE=4 SV=1	[more]

BLAST of CmoCh16G002540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17210.1	1.1e-52	50.23	Protein of unknown function (DUF1218)	[more]
AT1G13380.1	6.1e-11	29.81	Protein of unknown function (DUF1218)	[more]
AT1G61065.1	1.2e-09	32.54	Protein of unknown function (DUF1218)	[more]
AT1G68220.1	4.4e-09	30.89	Protein of unknown function (DUF1218)	[more]
AT4G27435.1	4.4e-09	29.81	Protein of unknown function (DUF1218)	[more]

BLAST of CmoCh16G002540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458299\|ref\|XP_004146885.1\|	8.2e-82	72.94	PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus]	[more]
gi\|659107725\|ref\|XP_008453825.1\|	1.4e-78	70.91	PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo]	[more]
gi\|641833512\|gb\|KDO52524.1\|	1.0e-71	66.20	hypothetical protein CISIN_1g028344mg [Citrus sinensis]	[more]
gi\|568877605\|ref\|XP_006491818.1\|	2.9e-71	65.74	PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis]	[more]
gi\|661891067\|emb\|CDP04949.1\|	3.6e-69	63.08	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002540.1	CmoCh16G002540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 58..150 score: 6.7
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 1..215 score: 1.1
None	No IPR available	PANTHER	PTHR31769:SF8	SUBFAMILY NOT NAMED	coord: 1..215 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G002540	Cucsa.093840	Cucumber (Gy14) v1	cgycmoB0189
CmoCh16G002540	CmaCh16G002360	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G002540	CmaCh04G003790	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G002540	Cla010685	Watermelon (97103) v1	cmowmB307
CmoCh16G002540	Csa5G168970	Cucumber (Chinese Long) v2	cmocuB333
CmoCh16G002540	Csa4G025740	Cucumber (Chinese Long) v2	cmocuB321
CmoCh16G002540	MELO3C017618	Melon (DHL92) v3.5.1	cmomeB299
CmoCh16G002540	ClCG01G005010	Watermelon (Charleston Gray)	cmowcgB287
CmoCh16G002540	ClCG07G017290	Watermelon (Charleston Gray)	cmowcgB295
CmoCh16G002540	CSPI05G07840	Wild cucumber (PI 183967)	cmocpiB341
CmoCh16G002540	CSPI04G04390	Wild cucumber (PI 183967)	cmocpiB328
CmoCh16G002540	Lsi07G001450	Bottle gourd (USVL1VR-Ls)	cmolsiB312
CmoCh16G002540	Lsi09G005280	Bottle gourd (USVL1VR-Ls)	cmolsiB289
CmoCh16G002540	Cp4.1LG14g05200	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G002540	Cp4.1LG01g03260	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G002540	Cp4.1LG05g07200	Cucurbita pepo (Zucchini)	cmocpeB325
CmoCh16G002540	MELO3C017618.2	Melon (DHL92) v3.6.1	cmomedB343
CmoCh16G002540	CsaV3_4G004490	Cucumber (Chinese Long) v3	cmocucB0384
CmoCh16G002540	CsaV3_5G005270	Cucumber (Chinese Long) v3	cmocucB0402
CmoCh16G002540	Cla97C07G144300	Watermelon (97103) v2	cmowmbB337
CmoCh16G002540	Cla97C01G005240	Watermelon (97103) v2	cmowmbB312
CmoCh16G002540	Bhi01G001973	Wax gourd	cmowgoB0438
CmoCh16G002540	CsGy5G005250	Cucumber (Gy14) v2	cgybcmoB598
CmoCh16G002540	CsGy4G004300	Cucumber (Gy14) v2	cgybcmoB464
CmoCh16G002540	Carg16777	Silver-seed gourd	carcmoB1175
CmoCh16G002540	Carg08475	Silver-seed gourd	carcmoB0967
CmoCh16G002540	Carg08052	Silver-seed gourd	carcmoB0509

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G002540	CmoCh02G010160	Cucurbita moschata (Rifu)	cmocmoB280
CmoCh16G002540	CmoCh04G004000	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G002540	Melon (DHL92) v3.6.1	cmomedB339
CmoCh16G002540	Watermelon (Charleston Gray)	cmowcgB279
CmoCh16G002540	Bottle gourd (USVL1VR-Ls)	cmolsiB294