CSPI04G04390 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G04390
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDNA-directed RNA polymerase subunit beta
LocationChr4 : 2854765 .. 2858253 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAATCAAAAGAAAACATTTCAAATACATTTGTTGAAATATTTAATTCCAAGCAAAGACTTATTGAAGAAGGAAAAATTAGAAAACGAAGTATTTTTTATGTTTCTCTTAATTTGAACTCAAAGGTTAGTTTCCAGTTTGACGATCTGTCAGCAAGTCTTAATGATAATTCCTATTGGCGCAGTGATCAAAGGTAAAACGCCGTCGTTTATTGTCCACCGCCACATCTTCCTCGCTACTACCATCCAAATTCCAAGTACTCTATGTCCTTCTTTCTTCATTCATAGTACGCAACGTCAAAATTTCAGCGCCTGTCATTTTCCCCTCAACTAATTTCCTCTACTCTCTTCCTAGTTTCTTCTCCTTCCCCGCCATTGAAATACTCGTCCTTAATACCAACCTCCACCCGAAACTCTCATCCTTCCTCTTTCCTTTTTTTTTTTTTTAATTCCAGTTAGTACTCGCCAGAGATGGAGAGGAAGTCGGCTCTGATGGTGGAATATGTGGTTGCTATTTTAGGGATTGTGATGATCGCCACTGGCTTCGCCGCTGAAGCCACAAGAACTAAGGTGAAGATTCAATTAATGATTACTGTTTGATCGCGGGGTTTTTTTTCGCCAGAGATGGAGAGGAAGTCGGCTCTGATGGTGGAATATGTGGTTGCTATTTTAGGGATTGTGATGATCGCCACTGGCTTCGCCGCTGAAGCCACAAGAACTAAGGTGAAGATTCAATTAATGATTACTGTTTGACCGCGGGGTTTTTTTTTTTTTTTTTTTTTTTCTGTTTGGCTGATGAGATATTGTGTGGGAAAGAATATGGAAGAACAGTTTTGAAGTAGGGTTCGTTTTAAATTGGGTATGTAATATGGTTGAATTTGATTAAAAATTATATAGAAAGAAGGTGGTGGTGAATTTTAAATACAGTTTGATTTGGATCTGATTTTCTTTTTTGTTTTGGCTTCTTCTTTTTATCATTACTTGTTTCCCAAGCCCTGATCTACAGGTTAATTGATTAGACTGATGGATTGGGGGTGTTATTATATCTAATCATACTTTTTTTTTTTTTTTTAATTTTCTGTTTTCTATTTTTGTGTGTGCGTGTGTGTGCTTTTAACTTTTTAGTATAGTAAAACTTGAGAATGATGATTTGAATCAGATGGAACGGTACTTTTCCTCTAATTTCAAGTAATTTGTAGGAGTTGGTTTGATAATGATTTTGTTTTTAATTTTCCATTTCTAGAGTTGACAAATTTGGTGAAAGTTTATTTTGTTGAGTGTTAAAATTTAGTTGGTCTCTGAAACTCACATATCGACCTAATATCTAATTTGGTTCGTACAATTTCGAAGAAATTTTCATTTTAATCCCTTGAGTTTTTACAAGTTACCGGGTTCTGTTCATGATGCCTTTGACGATACATCTGATGAAACAGAGAAAGTGCTCTGGATCAAGGAAATAATAGTTCAACTAGGGCAGATTAATAATCATCTAATGAAATTAGATCTGATTAGAACATGCTTGAGAGTGATTTTAAAACAACCACACTTTTTATCTTTCAAAATCAGTTTAATGTTTGCTTTTAAACTTTGACCAGGGATTTTCATACAATCAAATTTTAGAAGCACTTTTAATAAGCATGCCCTTGTTGGTTTTGAGACTTATGATTACGAGTCCACACTTTTTGATCACTATAAGAGAATTTTTCACTTTAAACGAAATTTCTATGCTAACCCAAATCATCATTGGCTTCTTTCTCTTTCCCTTGATATATGTTGATTTTGGTAACAGTTCTTTTGAGTTTAACGTGGGATTGATGCATTTTAAAGTTTGACACATCAATTTTGTTCATTTGACAGGGGAATCAAGTCACTAAAGTTGCTCCTGATTTGTGTAAATATCCCCGAAGTCCAGCATTGGGCCTTGGTTTGACAGCCGCACTATCGCTTTTGTTTGCTCAAATAACAATAAAGGCTTCGACGGGATGCGTTTGCTGCATTAGAGGTCCTCGGCCTCCTGCTTCTAAATGGAGAACAGCTGTGATCTGCTTTACCATTTCGTGGTATTTTTCGACCTTTCCTTTCTCATTCTAATTTGCATTTAGTTTATGGTTTGCTGTGTTTCTGTTGTATCATGAGATGAATTATAGGAAAATCAATTGAAACCAGAAGAGTTCTTGCGATTTGGTTTTCTCAAGTATAGGAAGAAATTTTGAACTCGCCTAGTCGAAATAAAGGTTATTTTATTGTGATCGATTAATCAATCTTCTGCCCCGGTTCTTGATGGCCCAACTTTACGTTACGATATTGTTTGTGATAATATAATTTTCTTTTTTTCTGCTTTAAAAACAGTTCCATGTTCTTGTTATCATCTTTTTGGCTTTTTCTGCCTTGTTAAGTCGTTATGATTTTTGTTACTCTTGTTTTTATCGAACATCTTAACCAAGAGAAGAGACTTCCTGATGTGACCTGATCCATGATCATCATAGTGTAAATGATCGATCTATTGTTTTGGATAAACGTTCTACTTTAATTTTCAACTAAAAGAACAATCGATGCCTTCAATTCTGAATGAAAATAGAACAAACGTAGATTCTCATTGTCCTCTGTTTTAGTCCCATCATCACGCCTTTGTCAACCATCATGGGTTTAGTTATTAGTAAATAAAAAACATGCGTTTGAGAAAAGGTCAAGATTGAAATGTGTTCAATCCATGGTGATCACATATTTAGAATTTAATGAGTTCTCTGCGGTTGTTTCATAAGGTTAGTTGAGGTGTCCATACTAACAAATATGAAGCAAAGACCTATCTTGAGTCTGAATTTTCCTTCCCTTTCCTTGTACCTACACCCTCAGCTTAATATCTTCTGCAGGGTTACATATGTGATAGCATTCCTCCTGTTCCTCACCGGTGCTGCACTGAACAACGGACGGGGCGAACAACGCAACTATTTCCGTGACTACGACTGCTATGTTCTAAAACCTGGAGTTTTTTCTTTTGCCACCATTGTAGGTATGGCAAGTTTAACTCTGGGAATGTCCTACTTCCTCATATTGAACTCTGCAAAGAATGACCCTTCTACTGTGTGGGGCCATCCTTCCGTTCCTCCTCAACCAAACATCGCAATGGCACAACCCCAGTTCCCAAACCCTCCTCCACCACCACAGAGAACTGCCGACCCCGTATTCGTTCACGAAGACACGTACATGAGACGACAATTCACGTGATCGGGAAATGTAGGTTGACACCAAATGCGTTTAAGAAACAACCGTGTAACTCATATCACTTGATTGATGTATCTTTTTAAACCAGGGATTGAAGGTGCACAAATACATTGGCTCTATAGAAAATAGTTGTTTTGGAGCTGTGTAGGCTCTCTTTCATAGAATTGATTTTGTGAAAGAAGGTGTCATTTTATTTCCCTTTGATCCAAAGGGAAGTGAATAGATTGTAATGTAATAAAATGTACATCCTTGATTTGTTGTGGGAAG

mRNA sequence

ATGGAGAGGAAGTCGGCTCTGATGGTGGAATATGTGGTTGCTATTTTAGGGATTGTGATGATCGCCACTGGCTTCGCCGCTGAAGCCACAAGAACTAAGGGGAATCAAGTCACTAAAGTTGCTCCTGATTTGTGTAAATATCCCCGAAGTCCAGCATTGGGCCTTGGTTTGACAGCCGCACTATCGCTTTTGTTTGCTCAAATAACAATAAAGGCTTCGACGGGATGCGTTTGCTGCATTAGAGGTCCTCGGCCTCCTGCTTCTAAATGGAGAACAGCTGTGATCTGCTTTACCATTTCGTGGGTTACATATGTGATAGCATTCCTCCTGTTCCTCACCGGTGCTGCACTGAACAACGGACGGGGCGAACAACGCAACTATTTCCGTGACTACGACTGCTATGTTCTAAAACCTGGAGTTTTTTCTTTTGCCACCATTGTAGGTATGGCAAGTTTAACTCTGGGAATGTCCTACTTCCTCATATTGAACTCTGCAAAGAATGACCCTTCTACTGTGTGGGGCCATCCTTCCGTTCCTCCTCAACCAAACATCGCAATGGCACAACCCCAGTTCCCAAACCCTCCTCCACCACCACAGAGAACTGCCGACCCCGTATTCGTTCACGAAGACACGTACATGAGACGACAATTCACGTGA

Coding sequence (CDS)

ATGGAGAGGAAGTCGGCTCTGATGGTGGAATATGTGGTTGCTATTTTAGGGATTGTGATGATCGCCACTGGCTTCGCCGCTGAAGCCACAAGAACTAAGGGGAATCAAGTCACTAAAGTTGCTCCTGATTTGTGTAAATATCCCCGAAGTCCAGCATTGGGCCTTGGTTTGACAGCCGCACTATCGCTTTTGTTTGCTCAAATAACAATAAAGGCTTCGACGGGATGCGTTTGCTGCATTAGAGGTCCTCGGCCTCCTGCTTCTAAATGGAGAACAGCTGTGATCTGCTTTACCATTTCGTGGGTTACATATGTGATAGCATTCCTCCTGTTCCTCACCGGTGCTGCACTGAACAACGGACGGGGCGAACAACGCAACTATTTCCGTGACTACGACTGCTATGTTCTAAAACCTGGAGTTTTTTCTTTTGCCACCATTGTAGGTATGGCAAGTTTAACTCTGGGAATGTCCTACTTCCTCATATTGAACTCTGCAAAGAATGACCCTTCTACTGTGTGGGGCCATCCTTCCGTTCCTCCTCAACCAAACATCGCAATGGCACAACCCCAGTTCCCAAACCCTCCTCCACCACCACAGAGAACTGCCGACCCCGTATTCGTTCACGAAGACACGTACATGAGACGACAATTCACGTGA
Homology
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BLAST of CSPI04G04390 vs. TrEMBL
Match: A0A0A0KU80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 7.7e-119
Identity = 216/218 (99.08%), Postives = 217/218 (99.54%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERKSALMV+YVVAILGIVMIATGFAAEATRTK NQVTKVAPDLCKYPRSPALGLGLTAA
Sbjct: 1   MERKSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
           RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP
Sbjct: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
           QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

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BLAST of CSPI04G04390 vs. TrEMBL
Match: A0A067EBD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.4e-66
Identity = 133/218 (61.01%), Postives = 162/218 (74.31%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERK  L +   V +LG++  ATGF AEATR KG+QV   +P  C YPRSPALGLGLTAA
Sbjct: 1   MERK-VLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           LSLL AQ+TI  +TGC+CC RGP P  S W  A++CF +SW T+VIAFLL LTGAALN+ 
Sbjct: 61  LSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQ 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
            GE+  YF +Y CYV+KPGVF+   ++ +AS+TLG+ Y+L L+SAKN  S +WG+ SVP 
Sbjct: 121 HGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN--SGLWGNSSVPQ 180

Query: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
           +  IAM QPQF     PPQRT +PVFVHEDTYMRRQFT
Sbjct: 181 EGGIAMGQPQF-----PPQRTQEPVFVHEDTYMRRQFT 210

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BLAST of CSPI04G04390 vs. TrEMBL
Match: A0A068U9S1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019822001 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-59
Identity = 123/216 (56.94%), Postives = 154/216 (71.30%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERK  ++V  VV  LG++  ATGFAAEATR KG+QV   +PD+C YPRSPALGLGLTAA
Sbjct: 1   MERK-VIVVCCVVGFLGLLSAATGFAAEATRIKGDQVKFPSPDVCVYPRSPALGLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           ++L+ AQ+ +  +TGC+CC RGP    S W+ A++CF +SW T+V+AFLL LTGAALN+ 
Sbjct: 61  VTLMIAQVIVNVATGCICCRRGPHQANSNWKLALVCFIVSWFTFVVAFLLLLTGAALNDQ 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
            GE+  YF  Y CYV+KPGVF+ A I+ +AS+TLG+ Y+++L S KN     WG  S P 
Sbjct: 121 HGEENMYFNYYYCYVVKPGVFAGAAILSLASVTLGLIYYVMLTSTKN-VIDAWGGSSAPV 180

Query: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQ 217
              IAM QPQF     P Q T  PVFVHEDTYMRRQ
Sbjct: 181 PGGIAMGQPQF-----PAQNTEAPVFVHEDTYMRRQ 209

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BLAST of CSPI04G04390 vs. TrEMBL
Match: D7T7U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02520 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.6e-58
Identity = 127/224 (56.70%), Postives = 156/224 (69.64%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MER+S ++  +V   LG++  A GFAAEA R KG+QV   +   C YPRSPAL LGLTAA
Sbjct: 1   MERRSLVLCTFV-GFLGLLSAALGFAAEAKRIKGSQVQFSSSTACTYPRSPALPLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           ++L+ AQ+ I  +TGC+CC RGP P  S W  A+ICF +SW T+VIAFLL LTGAALN+ 
Sbjct: 61  VALMIAQVMINIATGCICCRRGPHPSNSNWTLALICFVVSWFTFVIAFLLLLTGAALNDQ 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAK--NDPSTVWGHPSV 180
            GE+  YF +Y CYV+KPGVF+ A ++ +AS+TLG+ Y+L L+SAK  NDP   W  P  
Sbjct: 121 HGEESMYFGNYYCYVVKPGVFAGAAVLSLASVTLGILYYLTLSSAKERNDP---WPGPVA 180

Query: 181 PPQP----NIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
           P Q      IAM QPQFP   PP Q   DPVFVHEDTYMRRQFT
Sbjct: 181 PNQAQVGGGIAMGQPQFPPQNPPNQ---DPVFVHEDTYMRRQFT 217

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BLAST of CSPI04G04390 vs. TrEMBL
Match: M5X117_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011406mg PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.9e-58
Identity = 123/219 (56.16%), Postives = 153/219 (69.86%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERK  L+V   V +LG++  ATGF AE TR KG+QV  V+   C+YPRSPALGLG+TAA
Sbjct: 1   MERK-VLLVCCAVGLLGLLSAATGFGAEVTRIKGSQVRFVSVTQCEYPRSPALGLGVTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           ++L+ AQI +  STGC+CC R P+P  S W  A+ CF +SW T+VIAFLL LTGA LN+ 
Sbjct: 61  VALMLAQIILNVSTGCICCKRSPQPSNSNWTVALFCFVVSWFTFVIAFLLLLTGATLNDR 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
            G +  YF +Y CYV+KPGVF     + +AS+ LG+ Y++ LNS K D ++ WG  S PP
Sbjct: 121 HGVESMYFGNYYCYVVKPGVFGGGAGLSLASVVLGIVYYVTLNSVK-DSNSPWG-TSAPP 180

Query: 181 QPN-IAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
            P  IAM QPQF    PPP  T +PVFVHEDTYMRRQFT
Sbjct: 181 NPGAIAMGQPQF----PPPSTTQEPVFVHEDTYMRRQFT 212

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BLAST of CSPI04G04390 vs. TAIR10
Match: AT5G17210.1 (AT5G17210.1 Protein of unknown function (DUF1218))

HSP 1 Score: 187.6 bits (475), Expect = 8.3e-48
Identity = 103/221 (46.61%), Postives = 135/221 (61.09%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDL---CKYPRSPALGLGL 60
           MER+  +M   V+ +LG++   T F AEATR K +QVT    D    C YPRSPA  LG 
Sbjct: 1   MERRKIVMCG-VLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGF 60

Query: 61  TAALSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAAL 120
           T+AL L+ AQI +  S+GC CC +GP P  S W  ++ICF +SW T+VIAFL+ L+GAAL
Sbjct: 61  TSALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAAL 120

Query: 121 NNGRGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPS 180
           N+   E+      Y CY++KPGVFS   ++ + ++ LG+ Y+L L S K   +      +
Sbjct: 121 NDEHTEESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVAA-----T 180

Query: 181 VPPQPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
                 IAM QPQ       P+R  DPVFVHEDTYMRRQFT
Sbjct: 181 TTQGTGIAMGQPQI------PERVEDPVFVHEDTYMRRQFT 209

[Close]
BLAST of CSPI04G04390 vs. TAIR10
Match: AT4G27435.1 (AT4G27435.1 Protein of unknown function (DUF1218))

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 48/164 (29.27%), Postives = 79/164 (48.17%), Query Frame = 1 

Query: 8   MVEYVVAILGIVMIATGFAAEATRTKGNQV--TKVAPDLCKYPRSPALGLGLTAALSLLF 67
           +V  +V +  ++      AAE  R+    V  T+V  + C Y    A G G+ A L  + 
Sbjct: 5   IVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFLFSVA 64

Query: 68  AQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNGRGEQR 127
           +QI I   + C CC +  +P  S+   A+I F +SW+ ++IA +  L G+  N    + R
Sbjct: 65  SQILIMLVSRCFCCGKPLKPGGSR-ALALILFIVSWMFFLIAEICLLAGSVENAYHTKYR 124

Query: 128 NYFRDY--DCYVLKPGVFSF-ATIVGMASLTLGMSYFLILNSAK 167
             F D   DC  L+ GVF+  A+ V   ++     YF   ++A+
Sbjct: 125 TMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAE 167

[Close]
BLAST of CSPI04G04390 vs. TAIR10
Match: AT1G61065.1 (AT1G61065.1 Protein of unknown function (DUF1218))

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 48/168 (28.57%), Postives = 85/168 (50.60%), Query Frame = 1 

Query: 5   SALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDL--CKYPRSPALGLGLTAALS 64
           +++++  +V +  ++      AAE  RT   Q+++ + DL  C Y +  A GLG+ + L 
Sbjct: 2   ASVLLLLLVFVFDLIAFGLAVAAEQRRTTW-QISRESRDLSYCVYDKDIATGLGVGSFLV 61

Query: 65  LLFAQITIKASTGCVCCIRGPRPPASK-WRTAVICFTISWVTYVIAFLLFLTGAALNNGR 124
           LL +Q+ I  ++ C+CC R   P  S+ W  A+  F  +WV + IA +  L G+  N   
Sbjct: 62  LLASQLLIMVASRCLCCGRALTPSGSRSW--AIFLFITTWVFFFIAQVCLLAGSVRNAYH 121

Query: 125 GEQRNYFRDY--DCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKN 168
            + R YF +    C  L+ GVF       + +  +   Y++ L+ AK+
Sbjct: 122 TKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKD 166

[Close]
BLAST of CSPI04G04390 vs. NCBI nr
Match: gi|449458299|ref|XP_004146885.1| (PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus])

HSP 1 Score: 434.5 bits (1116), Expect = 1.1e-118
Identity = 216/218 (99.08%), Postives = 217/218 (99.54%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERKSALMV+YVVAILGIVMIATGFAAEATRTK NQVTKVAPDLCKYPRSPALGLGLTAA
Sbjct: 1   MERKSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
           RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP
Sbjct: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
           QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

[Close]
BLAST of CSPI04G04390 vs. NCBI nr
Match: gi|659107725|ref|XP_008453825.1| (PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo])

HSP 1 Score: 395.6 bits (1015), Expect = 5.7e-107
Identity = 196/220 (89.09%), Postives = 209/220 (95.00%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERK+AL+V++VVA LGIVMIATGFAAEATRTKG QVT+VAPD+CKYPRSPA+GLG TAA
Sbjct: 1   MERKAALVVKFVVAFLGIVMIATGFAAEATRTKGKQVTRVAPDVCKYPRSPAMGLGFTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           LSLLFAQITIKASTGCVCCIRGPRPP  KWRTAVICFT+SW+TYVIAFLLFLTGAALNNG
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPP--KWRTAVICFTVSWITYVIAFLLFLTGAALNNG 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
           R +QRNY  +Y+CYVLKPGVFSFATIVG+ASLTLGMSYFLILNSAKNDPSTVWGHPSVPP
Sbjct: 121 RDQQRNYLGNYECYVLKPGVFSFATIVGVASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 QPNIAMAQPQFPN--PPPPPQRTADPVFVHEDTYMRRQFT 219
           QPNIAMAQPQFPN  PPPPPQRT DPVFVHEDTYMRRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPPPQRTTDPVFVHEDTYMRRQFT 218

[Close]
BLAST of CSPI04G04390 vs. NCBI nr
Match: gi|641833512|gb|KDO52524.1| (hypothetical protein CISIN_1g028344mg [Citrus sinensis])

HSP 1 Score: 259.6 bits (662), Expect = 4.9e-66
Identity = 133/218 (61.01%), Postives = 162/218 (74.31%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERK  L +   V +LG++  ATGF AEATR KG+QV   +P  C YPRSPALGLGLTAA
Sbjct: 1   MERK-VLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           LSLL AQ+TI  +TGC+CC RGP P  S W  A++CF +SW T+VIAFLL LTGAALN+ 
Sbjct: 61  LSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQ 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
            GE+  YF +Y CYV+KPGVF+   ++ +AS+TLG+ Y+L L+SAKN  S +WG+ SVP 
Sbjct: 121 HGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN--SGLWGNSSVPQ 180

Query: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
           +  IAM QPQF     PPQRT +PVFVHEDTYMRRQFT
Sbjct: 181 EGGIAMGQPQF-----PPQRTQEPVFVHEDTYMRRQFT 210

[Close]
BLAST of CSPI04G04390 vs. NCBI nr
Match: gi|568877605|ref|XP_006491818.1| (PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis])

HSP 1 Score: 258.1 bits (658), Expect = 1.4e-65
Identity = 132/218 (60.55%), Postives = 162/218 (74.31%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERK  L +   V +LG++  ATGF AEATR KG+QV   +P  C YPRSPALGLGLTAA
Sbjct: 1   MERK-VLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           LSLL AQ+TI  +TGC+CC RGP P  S W  A++CF +SW T+VIAFLL LTGAALN+ 
Sbjct: 61  LSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQ 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
            GE+  YF +Y CYV+KPGVF+   ++ +AS+TLG+ Y+L L+SAKN  S +WG+ SVP 
Sbjct: 121 HGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN--SGLWGNSSVPQ 180

Query: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 219
           +  IAM QPQF     PPQRT +PVFVHEDT+MRRQFT
Sbjct: 181 EGGIAMGQPQF-----PPQRTQEPVFVHEDTFMRRQFT 210

[Close]
BLAST of CSPI04G04390 vs. NCBI nr
Match: gi|661891067|emb|CDP04949.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-59
Identity = 123/216 (56.94%), Postives = 154/216 (71.30%), Query Frame = 1 

Query: 1   MERKSALMVEYVVAILGIVMIATGFAAEATRTKGNQVTKVAPDLCKYPRSPALGLGLTAA 60
           MERK  ++V  VV  LG++  ATGFAAEATR KG+QV   +PD+C YPRSPALGLGLTAA
Sbjct: 1   MERK-VIVVCCVVGFLGLLSAATGFAAEATRIKGDQVKFPSPDVCVYPRSPALGLGLTAA 60

Query: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120
           ++L+ AQ+ +  +TGC+CC RGP    S W+ A++CF +SW T+V+AFLL LTGAALN+ 
Sbjct: 61  VTLMIAQVIVNVATGCICCRRGPHQANSNWKLALVCFIVSWFTFVVAFLLLLTGAALNDQ 120

Query: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180
            GE+  YF  Y CYV+KPGVF+ A I+ +AS+TLG+ Y+++L S KN     WG  S P 
Sbjct: 121 HGEENMYFNYYYCYVVKPGVFAGAAILSLASVTLGLIYYVMLTSTKN-VIDAWGGSSAPV 180

Query: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQ 217
              IAM QPQF     P Q T  PVFVHEDTYMRRQ
Sbjct: 181 PGGIAMGQPQF-----PAQNTEAPVFVHEDTYMRRQ 209

The following BLAST results are available for this feature:
BLAST of CSPI04G04390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G04390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU80_CUCSA7.7e-11999.08Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1[more]
A0A067EBD4_CITSI3.4e-6661.01Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1[more]
A0A068U9S1_COFCA1.1e-5956.94Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019822001 PE=4 SV=1[more]
D7T7U5_VITVI7.6e-5856.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02520 PE=4 SV=... [more]
M5X117_PRUPE9.9e-5856.16Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011406mg PE=4 SV=1[more]
BLAST of CSPI04G04390 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17210.18.3e-4846.61 Protein of unknown function (DUF1218)[more]
AT4G27435.11.8e-1029.27 Protein of unknown function (DUF1218)[more]
AT1G61065.12.4e-1028.57 Protein of unknown function (DUF1218)[more]
BLAST of CSPI04G04390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458299|ref|XP_004146885.1|1.1e-11899.08PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus][more]
gi|659107725|ref|XP_008453825.1|5.7e-10789.09PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo][more]
gi|641833512|gb|KDO52524.1|4.9e-6661.01hypothetical protein CISIN_1g028344mg [Citrus sinensis][more]
gi|568877605|ref|XP_006491818.1|1.4e-6560.55PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis][more]
gi|661891067|emb|CDP04949.1|1.5e-5956.94unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009606DUF1218
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G04390.1CSPI04G04390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Protein of unknown function DUF1218PFAMPF06749DUF1218coord: 59..151
score: 1.7
NoneNo IPR availablePANTHERPTHR31769FAMILY NOT NAMEDcoord: 1..217
score: 5.1
NoneNo IPR availablePANTHERPTHR31769:SF8SUBFAMILY NOT NAMEDcoord: 1..217
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G04390Cla010685Watermelon (97103) v1cpiwmB315
CSPI04G04390Csa4G025740Cucumber (Chinese Long) v2cpicuB182
CSPI04G04390Csa5G168970Cucumber (Chinese Long) v2cpicuB194
CSPI04G04390MELO3C017618Melon (DHL92) v3.5.1cpimeB310
CSPI04G04390ClCG07G017290Watermelon (Charleston Gray)cpiwcgB336
CSPI04G04390ClCG01G005010Watermelon (Charleston Gray)cpiwcgB298
CSPI04G04390Lsi07G001450Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G04390Lsi09G005280Bottle gourd (USVL1VR-Ls)cpilsiB243
CSPI04G04390MELO3C017618.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G04390CsaV3_5G005270Cucumber (Chinese Long) v3cpicucB234
CSPI04G04390CsaV3_4G004490Cucumber (Chinese Long) v3cpicucB213
CSPI04G04390Cla97C01G005240Watermelon (97103) v2cpiwmbB274
CSPI04G04390Cla97C07G144300Watermelon (97103) v2cpiwmbB326
CSPI04G04390Bhi01G001973Wax gourdcpiwgoB378
CSPI04G04390Cucsa.093840Cucumber (Gy14) v1cgycpiB103
CSPI04G04390CmaCh16G002360Cucurbita maxima (Rimu)cmacpiB337
CSPI04G04390CmaCh04G003790Cucurbita maxima (Rimu)cmacpiB716
CSPI04G04390CmoCh16G002540Cucurbita moschata (Rifu)cmocpiB328
CSPI04G04390CmoCh02G010160Cucurbita moschata (Rifu)cmocpiB604
CSPI04G04390CmoCh04G004000Cucurbita moschata (Rifu)cmocpiB708
CSPI04G04390Cp4.1LG05g07200Cucurbita pepo (Zucchini)cpecpiB731
CSPI04G04390Cp4.1LG01g03260Cucurbita pepo (Zucchini)cpecpiB398
CSPI04G04390Cp4.1LG14g05200Cucurbita pepo (Zucchini)cpecpiB220
CSPI04G04390CsGy5G005250Cucumber (Gy14) v2cgybcpiB222
CSPI04G04390CsGy4G004300Cucumber (Gy14) v2cgybcpiB168
CSPI04G04390Carg16777Silver-seed gourdcarcpiB0906
CSPI04G04390Carg08475Silver-seed gourdcarcpiB0746
CSPI04G04390Carg08052Silver-seed gourdcarcpiB0408
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI04G04390CSPI05G07840Wild cucumber (PI 183967)cpicpiB156
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G04390Watermelon (97103) v2cpiwmbB273