Cp4.1LG01g03260.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCTACCACGGTTTCTTCGCCCATTGAAATCGCGACATCAATCCGAAACTCCACCAAATTCCGCCAGTTTTTTCTCCCTTGAGTCTCGAGGTAGGCCATCGGCGGCGGCGGAGATGGAGAATAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTCGCCGCTGAGGGCACCAAAGTTAAGGTGAAGATGCTTTTTCTTACTCATGATTTATTGATTGCGTGATTTTTTCTTTCGTGGATTTTCTGTTTGGTTGATGAGAAAATCCGTCGAAAAGAAAGTTATGGAATAGTATTGAAGGGGAGTTTTAATGTTCTGATTTGGAAATTATATATGAAAAAGCTGTTCGTGAATTTAAAACTTAGATTGGATTGAAACTGTTTGCCCTACTGAATGGATCTTCTTTTTCTTTTGTGTAATAATTAAGAAATACCGATCTGAATCAGATGAAATCGGCATTTTATTTCCTATGGCAAATGATAGCAGAGAAGATAGATCTGACCTTTAAACTTTCTCAAACGATTCTTGAGGCTGCGGCCATAAACTTCCAATTAGAGTCGGTTTGATAGCAATTTTGTTCTGGTTTTCAAGAGGTTATGCAATGTACTCATAGTTTCTTTTGTTTGTGCTATGCGTTTTTTAATTTGGGTTGAAATTTACATAACTTCTGATTTTCTCCCTAAAATTTCGAACAGTTTCTTCTTAATCACTCAAGAGTTTTAATGAGTAACCGCTTCAATTCATGTAACAACAAATCAGAAACAGGTTTTGATAACATTTTTATATCCAATCGATACAGTTTTGAAAATCGTGCTTAATTTCTTTTAATTTTCTTAGAATAGTTTTGAACTTCTCTTAAGTACATATAAATTCTTAGCTGAATTCTTCTTGTCGATTAGTAGAAGAGGAACTTGCATTTTAAATAAAGTTTGTATGCAAATCATTAGAAGTTTGACTAGTTGTTCTCTTCATTTGACAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATTTTGCAACCGGGTGCTTTTGCTGCTTTGCGGCCCCTCGCTCTTCTATTTCTAAATGGCGAATAGCCCTGATCTGCTACGTCATTTCCTGGTACTCTTCACTTATTTGTAGCATTTTTTCCTTACCCTTTTCTTGGACCAACAACATTAGTTTAATTTCATGTGCAGGATTACATTTGCGAAAGCGTTCATTATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTATTATGGCTACCATTGTGGCCACGGTGAGCATAGTGCTGGGATTGGCCTATTACATTCTATTGAACTCAACAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACACAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGATCGTTAATCGATAAATGTAGGTCGATACCGAACGCGTTTAACAAAACTATGTAACTCAGACCAC TCTCTACCACGGTTTCTTCGCCCATTGAAATCGCGACATCAATCCGAAACTCCACCAAATTCCGCCAGTTTTTTCTCCCTTGAGTCTCGAGGTAGGCCATCGGCGGCGGCGGAGATGGAGAATAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTCGCCGCTGAGGGCACCAAAGTTAAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATTTTGCAACCGGGTGCTTTTGCTGCTTTGCGGCCCCTCGCTCTTCTATTTCTAAATGGCGAATAGCCCTGATCTGCTACGTCATTTCCTGGATTACATTTGCGAAAGCGTTCATTATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTATTATGGCTACCATTGTGGCCACGGTGAGCATAGTGCTGGGATTGGCCTATTACATTCTATTGAACTCAACAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACACAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGATCGTTAATCGATAAATGTAGGTCGATACCGAACGCGTTTAACAAAACTATGTAACTCAGACCAC ATGGAGAATAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTCGCCGCTGAGGGCACCAAAGTTAAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATTTTGCAACCGGGTGCTTTTGCTGCTTTGCGGCCCCTCGCTCTTCTATTTCTAAATGGCGAATAGCCCTGATCTGCTACGTCATTTCCTGGATTACATTTGCGAAAGCGTTCATTATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTATTATGGCTACCATTGTGGCCACGGTGAGCATAGTGCTGGGATTGGCCTATTACATTCTATTGAACTCAACAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACACAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGA MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAALSLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQRGEQSYFLGYCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQANIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT
BLAST of Cp4.1LG01g03260.1 vs. TrEMBL
Match: A0A0A0KU80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61 Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. TrEMBL
Match: A0A067EBD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55 Identity = 114/213 (53.52%), Postives = 149/213 (69.95%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. TrEMBL
Match: A0A0B0MRY5_GOSAR (DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_26197 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 7.1e-53 Identity = 117/214 (54.67%), Postives = 145/214 (67.76%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. TrEMBL
Match: A0A0D2QFW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G051400 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 9.2e-53 Identity = 116/214 (54.21%), Postives = 145/214 (67.76%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. TrEMBL
Match: A0A061EZX5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025365 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 2.7e-52 Identity = 110/213 (51.64%), Postives = 147/213 (69.01%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. TAIR10
Match: AT5G17210.1 (AT5G17210.1 Protein of unknown function (DUF1218)) HSP 1 Score: 171.4 bits (433), Expect = 5.9e-43 Identity = 97/216 (44.91%), Postives = 133/216 (61.57%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. NCBI nr
Match: gi|449458299|ref|XP_004146885.1| (PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus]) HSP 1 Score: 243.8 bits (621), Expect = 2.7e-61 Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. NCBI nr
Match: gi|659107725|ref|XP_008453825.1| (PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo]) HSP 1 Score: 231.1 bits (588), Expect = 1.8e-57 Identity = 126/220 (57.27%), Postives = 156/220 (70.91%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. NCBI nr
Match: gi|641833512|gb|KDO52524.1| (hypothetical protein CISIN_1g028344mg [Citrus sinensis]) HSP 1 Score: 223.8 bits (569), Expect = 2.9e-55 Identity = 114/213 (53.52%), Postives = 149/213 (69.95%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. NCBI nr
Match: gi|568877605|ref|XP_006491818.1| (PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis]) HSP 1 Score: 222.2 bits (565), Expect = 8.3e-55 Identity = 113/213 (53.05%), Postives = 149/213 (69.95%), Query Frame = 1
BLAST of Cp4.1LG01g03260.1 vs. NCBI nr
Match: gi|728816797|gb|KHG02244.1| (DNA-directed RNA polymerase subunit beta [Gossypium arboreum]) HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52 Identity = 117/214 (54.67%), Postives = 145/214 (67.76%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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