CmoCh04G024140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G024140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Structural constituent of ribosome, putative
Location	Cmo_Chr04 : 17961211 .. 17962011 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAATCAGAATCAATGTCCAGTAATCGAAACTGTACGATCCTCGATTTCTGGACTCAAAGCCCTAATTTCTTTGGAAGAAGGAAAAGGAAAGGAAGAACGAGTCATTCGCGGTGTTGGAGTCGGCATTATCAGGTCAAAATTGTCGACTAATTCTTCTTCTTCTTCTTTTTGTAATTCCATCAGATCTTTTAATTTTTTAATGGACGATTTGATCGGAACTGAGAGCGGAGTTTGCTTGACTTCGAATGCTGGAGAAATCGAAGAGAAAGTAACTCGCTCTGATTCCGATTTTTCTAATAATCGCGTTAATCGTCGCGATTTGTTGAAAAAGGAGTTTCCACCGCCGATTCCTTTCCTAGAGGCACTGGCAGGGCATCGAATTCGGCCGCCGTGGATTTTAACGAGAAATTGCATCGATGGAAGGTTGATTTTGAATCTGGAGAGAGTGAGGCATCATCAATCCTTGGAATCGCACCGTGAAAATGGCCGTTTAATTCTCAATCTCGTTCCGGCGAATGTGGCCGGCGTCGGTACAGAGGATGAGGATGATCAGGATCTTCAATTCATCGAAGATGCCGAAGAAGAAGAGAAGATGAAAGAATCGGTTGAATGCGAAGTAGGCGACGATCCTGAATATGGTTTTAAGAGTTTTCCGTTCGGCGGAGGCGGAGGCGGAGGCAGAATGGTTTGCGATCGGGGACCGTCTTGTGGTGTAAATGGGAATTTAGGAGAACGACACGTCGTCCATGGACATTTCGGTTCGGCTCCTCTTCGTTCGATGGGTACAGTTATGTGA

mRNA sequence

ATGCAAAATCAGAATCAATGTCCAGTAATCGAAACTGTACGATCCTCGATTTCTGGACTCAAAGCCCTAATTTCTTTGGAAGAAGGAAAAGGAAAGGAAGAACGAGTCATTCGCGGTGTTGGAGTCGGCATTATCAGGTCAAAATTGTCGACTAATTCTTCTTCTTCTTCTTTTTGTAATTCCATCAGATCTTTTAATTTTTTAATGGACGATTTGATCGGAACTGAGAGCGGAGTTTGCTTGACTTCGAATGCTGGAGAAATCGAAGAGAAAGTAACTCGCTCTGATTCCGATTTTTCTAATAATCGCGTTAATCGTCGCGATTTGTTGAAAAAGGAGTTTCCACCGCCGATTCCTTTCCTAGAGGCACTGGCAGGGCATCGAATTCGGCCGCCGTGGATTTTAACGAGAAATTGCATCGATGGAAGGTTGATTTTGAATCTGGAGAGAGTGAGGCATCATCAATCCTTGGAATCGCACCGTGAAAATGGCCGTTTAATTCTCAATCTCGTTCCGGCGAATGTGGCCGGCGTCGGTACAGAGGATGAGGATGATCAGGATCTTCAATTCATCGAAGATGCCGAAGAAGAAGAGAAGATGAAAGAATCGGTTGAATGCGAAGTAGGCGACGATCCTGAATATGGTTTTAAGAGTTTTCCGTTCGGCGGAGGCGGAGGCGGAGGCAGAATGGTTTGCGATCGGGGACCGTCTTGTGGTGTAAATGGGAATTTAGGAGAACGACACGTCGTCCATGGACATTTCGGTTCGGCTCCTCTTCGTTCGATGGGTACAGTTATGTGA

Coding sequence (CDS)

ATGCAAAATCAGAATCAATGTCCAGTAATCGAAACTGTACGATCCTCGATTTCTGGACTCAAAGCCCTAATTTCTTTGGAAGAAGGAAAAGGAAAGGAAGAACGAGTCATTCGCGGTGTTGGAGTCGGCATTATCAGGTCAAAATTGTCGACTAATTCTTCTTCTTCTTCTTTTTGTAATTCCATCAGATCTTTTAATTTTTTAATGGACGATTTGATCGGAACTGAGAGCGGAGTTTGCTTGACTTCGAATGCTGGAGAAATCGAAGAGAAAGTAACTCGCTCTGATTCCGATTTTTCTAATAATCGCGTTAATCGTCGCGATTTGTTGAAAAAGGAGTTTCCACCGCCGATTCCTTTCCTAGAGGCACTGGCAGGGCATCGAATTCGGCCGCCGTGGATTTTAACGAGAAATTGCATCGATGGAAGGTTGATTTTGAATCTGGAGAGAGTGAGGCATCATCAATCCTTGGAATCGCACCGTGAAAATGGCCGTTTAATTCTCAATCTCGTTCCGGCGAATGTGGCCGGCGTCGGTACAGAGGATGAGGATGATCAGGATCTTCAATTCATCGAAGATGCCGAAGAAGAAGAGAAGATGAAAGAATCGGTTGAATGCGAAGTAGGCGACGATCCTGAATATGGTTTTAAGAGTTTTCCGTTCGGCGGAGGCGGAGGCGGAGGCAGAATGGTTTGCGATCGGGGACCGTCTTGTGGTGTAAATGGGAATTTAGGAGAACGACACGTCGTCCATGGACATTTCGGTTCGGCTCCTCTTCGTTCGATGGGTACAGTTATGTGA

Homology

[Close]

BLAST of CmoCh04G024140 vs. TrEMBL
Match: A0A0A0KRM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409650 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.3e-56
Identity = 154/296 (52.03%), Postives = 185/296 (62.50%), Query Frame = 1


Query: 1   MQNQNQCPVIETVRSSISGLKALISLEEGKGKEERVIRGVGVGIIRSKL----------- 60
           +Q  N+ P +    S   GLK+LIS ++ +  E+ VIR VG+ IIRS L           
Sbjct: 36  IQKHNRIPPLLLSFSISGGLKSLISSKQ-QFTEDPVIRSVGLAIIRSNLLTHSSSSSSSA 95

Query: 61  -STNSSSSSFC-NSIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSDFSNNRV--- 120
            S++SSSSSFC +SIRS NF MDDLIGTESGVCLTSN+ E+E   T SD D    R    
Sbjct: 96  SSSSSSSSSFCFSSIRSCNFSMDDLIGTESGVCLTSNSEEME---THSDFDCPYYRTDRH 155

Query: 121 -----NRRDLLKKEFPPPIPFLEA-LAGHRIRPPWILTRNCIDGRLILNLERVRHHQSLE 180
                N+R +LKK+FPPPIPF+    AG+R R PW+LTR   + RLIL LERV  HQSLE
Sbjct: 156 HFILQNQRCVLKKQFPPPIPFIATQAAGNRPRSPWVLTRYYSNRRLILKLERVTQHQSLE 215

Query: 181 SHRENGRLILNLVPANVAGVGTEDEDDQD--LQFIEDAEEEEKMKESVECEVGD----DP 240
           S RENGRLILNLVP         DE DQD     IE+ E  E++ ES++C+ G+    D 
Sbjct: 216 SRRENGRLILNLVPI--------DERDQDHFQHLIEEKEGNEEIVESIDCDGGEDEGTDS 275

Query: 241 EYGFKSFPFG--GGGGGGRMVCDRGPSCGVNGNLGERHVVHGHFGSAPLRSMGTVM 267
           E   +S+ +G  GGGGGG M       CG NGN  ERHVVHGHFGSAPLR MGTVM
Sbjct: 276 EISIRSYTYGGEGGGGGGGMT-----FCGANGNFEERHVVHGHFGSAPLRPMGTVM 314

[Close]

BLAST of CmoCh04G024140 vs. TrEMBL
Match: B9H771_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16470g PE=4 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 1


Query: 44  IIRSKLSTNSSSSSFCNSIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSDFSNNR 103
           ++RS L+ NSSS S C+S       +DDLIGTESGV + +N  E   ++ + +S     +
Sbjct: 63  LVRS-LTNNSSSYSSCSSA------LDDLIGTESGVYMNANIEEETAQMEKLESYHHQYK 122

Query: 104 VNRRDLLKKEFPPPIPFLEALAGHRIRPPWILTRNCIDGRLILNLERVRHHQSLESHREN 163
             +R   +K++PPPIP L          PWILTR+ IDGRL+L  ERV++H+  E+ REN
Sbjct: 123 RKQRYATRKKYPPPIPLLARTGNLPGHMPWILTRHYIDGRLVLVEERVKNHEYFEAQREN 182

Query: 164 GRLILNLVP-------ANVAGVGTEDEDDQDLQFIE----------DAEEEEKMKESV-E 216
           GRL+LN+VP       ++      E ++ QD+  +E          D EEEE+ +E+  E
Sbjct: 183 GRLVLNIVPLDDKITCSHFVSKNEEQKELQDVDSLEKNSDQEFDDDDEEEEEEGREAYQE 242

[Close]

BLAST of CmoCh04G024140 vs. TrEMBL
Match: B9RJE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033420 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 69/179 (38.55%), Postives = 101/179 (56.42%), Query Frame = 1


Query: 44  IIRSKLSTNSSSSSF-----CNSIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSD 103
           ++   LST SSSS F      +   S++ ++DDLIGTESGVCL S   E    + + ++ 
Sbjct: 43  LLSPSLSTTSSSSLFQSVADSSPYSSWSSMLDDLIGTESGVCLNSGIEERATIMWKHEAG 102

Query: 104 FSNNRVNRRDLL---KKEFPPPIPFLEALAGHRIRPPWILTRNCIDGRLILNLERVRHHQ 163
           +  N   R       +K +PP IP L          PWILTR+  +GRLIL  ER+ HH+
Sbjct: 103 YHPNHGKRDQQQCEKRKRYPPTIPLLARTGNLPSHTPWILTRHYFNGRLILREERLEHHE 162

Query: 164 SLESHRENGRLILNLVPANVAGVGTEDEDDQ-DLQFIEDAEEEEKMKESVECEVGDDPE 214
             ES+RENGRLIL L+      +  +DE+++ +LQ +E   +EEK +ES E E  ++ +
Sbjct: 163 YFESYRENGRLILKLIRIPFDDIAYDDEEEELELQELE-LIQEEKTQESTEEEEEEEED 220

[Close]

BLAST of CmoCh04G024140 vs. TrEMBL
Match: A0A067KKE3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12002 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 69/176 (39.20%), Postives = 99/176 (56.25%), Query Frame = 1


Query: 47  SKLSTNSS-----SSSFCNSIRSFNFLMDDLIGTESGVCLTSNAGEIE----EKVTRSDS 106
           S LST++S     SSSFC+S  S   ++DDLIGT+SGV L  +  E E    EK+ +  +
Sbjct: 71  SSLSTSASLSMSLSSSFCSSWSS---MLDDLIGTDSGVHLDPSEEEAEIPRMEKMEKYSN 130

Query: 107 DFSNNRVNRRDL--LKKEFPPPIPFLEALAGHRIRPPWILTRNCIDGRLILNLERVRHHQ 166
              N     ++L  +KK++PPPIP L   +      P ILTR+  DGRLIL  E+V+HH+
Sbjct: 131 KCHNLGKRNQELCEMKKKYPPPIPLLARTSNLDGHMPRILTRHYCDGRLILREEKVKHHE 190

Query: 167 SLESHRENGRLILNLVPAN-----VAGVGTEDEDD---QDLQFIEDAEEEEKMKES 204
             E++RENG LIL LV  N           E +++   QDLQ +E+   +E  + +
Sbjct: 191 YFEAYRENGTLILKLVQLNDTVECCHSCNCEKKEEIEMQDLQLMEEDGSQEDQESN 243

[Close]

BLAST of CmoCh04G024140 vs. TrEMBL
Match: M5XJE1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020391mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 66/190 (34.74%), Postives = 104/190 (54.74%), Query Frame = 1


Query: 47  SKLSTNSSSSSFC---NSIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSDFSNNR 106
           S  S +SS +S C   +S+   +  MDDLIGT+SGV +     + +    ++  +FS +R
Sbjct: 52  SSSSGSSSLTSSCMLDSSLSWSSSAMDDLIGTDSGVPIMLTKEQEKLGFLKNTVEFSMSR 111

Query: 107 VN-----------RRDLLKKEFPPPIPFLEALAGHRIRPPWILTRNC--IDGRLILNLER 166
            N           R + +K+E+PPPIP L      + R PWI T++    +GRL+L  ER
Sbjct: 112 RNEAKSTRSTTTRRSEKIKREYPPPIPLLAQTGNLQGRMPWIFTKHYDHSNGRLVLKGER 171

Query: 167 VRHHQSLESHRENGRLILNLVPA-------NVAGVGTEDEDDQDLQFIEDAEEEEKMKES 214
           V+HH+  E+ RE+GRLILNLVP        + A    ++E++++L+  ED +  +  ++ 
Sbjct: 172 VKHHEYFEARREDGRLILNLVPLDNALACFDSALTCCDEENEEELEMDEDLQTVD--EDV 231

[Close]

BLAST of CmoCh04G024140 vs. TAIR10
Match: AT1G22110.1 (AT1G22110.1 structural constituent of ribosome)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-12
Identity = 59/186 (31.72%), Postives = 87/186 (46.77%), Query Frame = 1


Query: 44  IIRSKLSTNSSSSSFCNSIRSFNFLMDDLIGTESGVCLTS-----NAGEIEEKVTRSDSD 103
           +  S LS  SSSSS           + D IGTES   + S     +   +  +  +S   
Sbjct: 33  VTSSMLSRTSSSSSSA---------VGDYIGTESCFDILSADEGNDVVSVASEPVKSRFR 92

Query: 104 FSNNRVNRRDL---LKKEFPPPIPFLEALAGHRIRPPWILTRNCI-DGRLILNLERVRHH 163
           +   R   R+      +EFPPPIP L          PW+L R    DGRLIL  E+VRHH
Sbjct: 93  YGGRRREEREARAAAAREFPPPIPLLAQTGNLLPHMPWVLKRVVTSDGRLILREEKVRHH 152

Query: 164 QSLESHRENGRLILNLVPAN---------VAGVGTEDEDDQDLQFIEDAEEEEKMKESVE 212
           +   ++R NGRL L+LVP +          +   ++DE+D D     + ++E++  +  +
Sbjct: 153 EYFRANRSNGRLTLHLVPLDDDVFDLPQEPSHYQSDDEEDDD-----ECDDEDECDDDDQ 204

[Close]

BLAST of CmoCh04G024140 vs. TAIR10
Match: AT5G22090.1 (AT5G22090.1 Protein of unknown function (DUF3049))

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 1


Query: 114 FPPPIPFLEALAGHRIRPPWILTRNCIDGRLILNLERVRHHQSLESHRENGRLILNLVP- 173
           FPPPI  L + +G  +    + TR   +GRL+L    +  H +  + R++GRL+L     
Sbjct: 225 FPPPIRSLSSQSGSSLH---MKTRRD-NGRLVLEAVSMPSHNNFSAKRQDGRLLLTFAEI 284

Query: 174 ANVAGVGTEDEDDQDLQFIEDAEEEEKMKESVECEVGDDPEY 215
           +N      EDE D ++Q+ ++ EEEE+ +E  E E  D+  Y
Sbjct: 285 SNEPNYDKEDEIDSEVQWFDEEEEEEEEEEDEEEEAPDEFAY 322

[Close]

BLAST of CmoCh04G024140 vs. NCBI nr
Match: gi|700195845|gb|KGN51022.1| (hypothetical protein Csa_5G409650 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 1.9e-56
Identity = 154/296 (52.03%), Postives = 185/296 (62.50%), Query Frame = 1


Query: 1   MQNQNQCPVIETVRSSISGLKALISLEEGKGKEERVIRGVGVGIIRSKL----------- 60
           +Q  N+ P +    S   GLK+LIS ++ +  E+ VIR VG+ IIRS L           
Sbjct: 36  IQKHNRIPPLLLSFSISGGLKSLISSKQ-QFTEDPVIRSVGLAIIRSNLLTHSSSSSSSA 95

Query: 61  -STNSSSSSFC-NSIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSDFSNNRV--- 120
            S++SSSSSFC +SIRS NF MDDLIGTESGVCLTSN+ E+E   T SD D    R    
Sbjct: 96  SSSSSSSSSFCFSSIRSCNFSMDDLIGTESGVCLTSNSEEME---THSDFDCPYYRTDRH 155

Query: 121 -----NRRDLLKKEFPPPIPFLEA-LAGHRIRPPWILTRNCIDGRLILNLERVRHHQSLE 180
                N+R +LKK+FPPPIPF+    AG+R R PW+LTR   + RLIL LERV  HQSLE
Sbjct: 156 HFILQNQRCVLKKQFPPPIPFIATQAAGNRPRSPWVLTRYYSNRRLILKLERVTQHQSLE 215

Query: 181 SHRENGRLILNLVPANVAGVGTEDEDDQD--LQFIEDAEEEEKMKESVECEVGD----DP 240
           S RENGRLILNLVP         DE DQD     IE+ E  E++ ES++C+ G+    D 
Sbjct: 216 SRRENGRLILNLVPI--------DERDQDHFQHLIEEKEGNEEIVESIDCDGGEDEGTDS 275

Query: 241 EYGFKSFPFG--GGGGGGRMVCDRGPSCGVNGNLGERHVVHGHFGSAPLRSMGTVM 267
           E   +S+ +G  GGGGGG M       CG NGN  ERHVVHGHFGSAPLR MGTVM
Sbjct: 276 EISIRSYTYGGEGGGGGGGMT-----FCGANGNFEERHVVHGHFGSAPLRPMGTVM 314

[Close]

BLAST of CmoCh04G024140 vs. NCBI nr
Match: gi|778702534|ref|XP_011655221.1| (PREDICTED: uncharacterized protein LOC105435501 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 142/283 (50.18%), Postives = 170/283 (60.07%), Query Frame = 1


Query: 1   MQNQNQCPVIETVRSSISGLKALISLEEGKGKEERVIRGVGVGIIRSKLSTNSSSSSFCN 60
           +Q  N+ P +    S   GLK+LIS ++ +  E+ VIR VG+ IIRS           CN
Sbjct: 36  IQKHNRIPPLLLSFSISGGLKSLISSKQ-QFTEDPVIRSVGLAIIRS-----------CN 95

Query: 61  SIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSDFSNNRV--------NRRDLLKK 120
                 F MDDLIGTESGVCLTSN+ E+E   T SD D    R         N+R +LKK
Sbjct: 96  ------FSMDDLIGTESGVCLTSNSEEME---THSDFDCPYYRTDRHHFILQNQRCVLKK 155

Query: 121 EFPPPIPFLEA-LAGHRIRPPWILTRNCIDGRLILNLERVRHHQSLESHRENGRLILNLV 180
           +FPPPIPF+    AG+R R PW+LTR   + RLIL LERV  HQSLES RENGRLILNLV
Sbjct: 156 QFPPPIPFIATQAAGNRPRSPWVLTRYYSNRRLILKLERVTQHQSLESRRENGRLILNLV 215

Query: 181 PANVAGVGTEDEDDQD--LQFIEDAEEEEKMKESVECEVGD----DPEYGFKSFPFG--G 240
           P         DE DQD     IE+ E  E++ ES++C+ G+    D E   +S+ +G  G
Sbjct: 216 PI--------DERDQDHFQHLIEEKEGNEEIVESIDCDGGEDEGTDSEISIRSYTYGGEG 275

Query: 241 GGGGGRMVCDRGPSCGVNGNLGERHVVHGHFGSAPLRSMGTVM 267
           GGGGG M       CG NGN  ERHVVHGHFGSAPLR MGTVM
Sbjct: 276 GGGGGGMT-----FCGANGNFEERHVVHGHFGSAPLRPMGTVM 284

[Close]

BLAST of CmoCh04G024140 vs. NCBI nr
Match: gi|659121100|ref|XP_008460499.1| (PREDICTED: uncharacterized protein LOC103499299 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 120/216 (55.56%), Postives = 136/216 (62.96%), Query Frame = 1


Query: 69  MDDLIGTESGVCLTSNAGEIEEKVTRSDSDFSNNRVNR--------RDLLKKEFPPPIPF 128
           MDDLIGTESGVCLTSN+ E+E   T SD D    R NR        R +LKK++PPPIPF
Sbjct: 1   MDDLIGTESGVCLTSNSEEME---THSDFDCRCYRTNRHNFALQNQRCMLKKQYPPPIPF 60

Query: 129 LEA-LAGHRIRPPWILTRNCIDGRLILNLERVRHHQSLESHRENGRLILNLVPANVAGVG 188
           +    AG+R R PWILTR   + RLIL LERV  HQSLES RENGRLILNLVP       
Sbjct: 61  IATQAAGNRPRSPWILTRYYSNRRLILKLERVTQHQSLESRRENGRLILNLVPI------ 120

Query: 189 TEDEDDQDLQFIEDAEEEEKMKESVECEVGD----DPEYGFKSFPFGGGGGGGRMVCDRG 248
            ED  D     IE+ E +E++ ES+EC+ G+    D E  FKS  +GG GGGG      G
Sbjct: 121 -EDRQDHLQHLIEEKEGDEEIVESIECDGGEDEGTDSEISFKSCTYGGEGGGGGGGGGGG 180

Query: 249 PS-----CGVNGNLGERHVVHGHFGSAPLRSMGTVM 267
                  CGVNGN  ERHVVHGH GSAPLR MGTVM
Sbjct: 181 GGGGMMFCGVNGNFEERHVVHGHLGSAPLRPMGTVM 206

[Close]

BLAST of CmoCh04G024140 vs. NCBI nr
Match: gi|566171747|ref|XP_002306595.2| (hypothetical protein POPTR_0005s16470g [Populus trichocarpa])

HSP 1 Score: 107.1 bits (266), Expect = 4.9e-20
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 1


Query: 44  IIRSKLSTNSSSSSFCNSIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSDFSNNR 103
           ++RS L+ NSSS S C+S       +DDLIGTESGV + +N  E   ++ + +S     +
Sbjct: 63  LVRS-LTNNSSSYSSCSSA------LDDLIGTESGVYMNANIEEETAQMEKLESYHHQYK 122

Query: 104 VNRRDLLKKEFPPPIPFLEALAGHRIRPPWILTRNCIDGRLILNLERVRHHQSLESHREN 163
             +R   +K++PPPIP L          PWILTR+ IDGRL+L  ERV++H+  E+ REN
Sbjct: 123 RKQRYATRKKYPPPIPLLARTGNLPGHMPWILTRHYIDGRLVLVEERVKNHEYFEAQREN 182

Query: 164 GRLILNLVP-------ANVAGVGTEDEDDQDLQFIE----------DAEEEEKMKESV-E 216
           GRL+LN+VP       ++      E ++ QD+  +E          D EEEE+ +E+  E
Sbjct: 183 GRLVLNIVPLDDKITCSHFVSKNEEQKELQDVDSLEKNSDQEFDDDDEEEEEEGREAYQE 242

[Close]

BLAST of CmoCh04G024140 vs. NCBI nr
Match: gi|1000977366|ref|XP_002513868.2| (PREDICTED: uncharacterized protein LOC8263019 [Ricinus communis])

HSP 1 Score: 104.4 bits (259), Expect = 3.2e-19
Identity = 69/179 (38.55%), Postives = 101/179 (56.42%), Query Frame = 1


Query: 44  IIRSKLSTNSSSSSF-----CNSIRSFNFLMDDLIGTESGVCLTSNAGEIEEKVTRSDSD 103
           ++   LST SSSS F      +   S++ ++DDLIGTESGVCL S   E    + + ++ 
Sbjct: 373 LLSPSLSTTSSSSLFQSVADSSPYSSWSSMLDDLIGTESGVCLNSGIEERATIMWKHEAG 432

Query: 104 FSNNRVNRRDLL---KKEFPPPIPFLEALAGHRIRPPWILTRNCIDGRLILNLERVRHHQ 163
           +  N   R       +K +PP IP L          PWILTR+  +GRLIL  ER+ HH+
Sbjct: 433 YHPNHGKRDQQQCEKRKRYPPTIPLLARTGNLPSHTPWILTRHYFNGRLILREERLEHHE 492

Query: 164 SLESHRENGRLILNLVPANVAGVGTEDEDDQ-DLQFIEDAEEEEKMKESVECEVGDDPE 214
             ES+RENGRLIL L+      +  +DE+++ +LQ +E   +EEK +ES E E  ++ +
Sbjct: 493 YFESYRENGRLILKLIRIPFDDIAYDDEEEELELQELE-LIQEEKTQESTEEEEEEEED 550

The following BLAST results are available for this feature:

BLAST of CmoCh04G024140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G024140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRM2_CUCSA	1.3e-56	52.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409650 PE=4 SV=1	[more]
B9H771_POPTR	3.4e-20	38.42	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16470g PE=4 SV=2	[more]
B9RJE8_RICCO	2.2e-19	38.55	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033420 PE=4 SV=1	[more]
A0A067KKE3_JATCU	1.1e-15	39.20	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12002 PE=4 SV=1	[more]
M5XJE1_PRUPE	2.1e-14	34.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020391mg PE=4 SV=1	[more]

BLAST of CmoCh04G024140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22110.1	3.1e-12	31.72	structural constituent of ribosome	[more]
AT5G22090.1	1.5e-06	33.33	Protein of unknown function (DUF3049)	[more]

BLAST of CmoCh04G024140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195845\|gb\|KGN51022.1\|	1.9e-56	52.03	hypothetical protein Csa_5G409650 [Cucumis sativus]	[more]
gi\|778702534\|ref\|XP_011655221.1\|	2.0e-50	50.18	PREDICTED: uncharacterized protein LOC105435501 [Cucumis sativus]	[more]
gi\|659121100\|ref\|XP_008460499.1\|	3.4e-45	55.56	PREDICTED: uncharacterized protein LOC103499299 [Cucumis melo]	[more]
gi\|566171747\|ref\|XP_002306595.2\|	4.9e-20	38.42	hypothetical protein POPTR_0005s16470g [Populus trichocarpa]	[more]
gi\|1000977366\|ref\|XP_002513868.2\|	3.2e-19	38.55	PREDICTED: uncharacterized protein LOC8263019 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021410	FAF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024140.1	CmoCh04G024140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021410	The fantastic four family	PFAM	PF11250	FAF	coord: 113..170 score: 1.9
None	No IPR available	PANTHER	PTHR33155	FAMILY NOT NAMED	coord: 16..207 score: 1.7
None	No IPR available	PANTHER	PTHR33155:SF11	SUBFAMILY NOT NAMED	coord: 16..207 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G024140	Cucsa.034620	Cucumber (Gy14) v1	cgycmoB0019
CmoCh04G024140	CmaCh15G007290	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G024140	CmaCh04G023110	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G024140	Cla019783	Watermelon (97103) v1	cmowmB667
CmoCh04G024140	Csa5G409650	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G024140	MELO3C022817	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G024140	ClCG03G008900	Watermelon (Charleston Gray)	cmowcgB647
CmoCh04G024140	CSPI05G14700	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G024140	Lsi09G009510	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G024140	Cp4.1LG13g05030	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G024140	Cp4.1LG01g20190	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G024140	MELO3C022817.2	Melon (DHL92) v3.6.1	cmomedB715
CmoCh04G024140	CsaV3_5G023830	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G024140	Cla97C03G060090	Watermelon (97103) v2	cmowmbB719
CmoCh04G024140	Bhi12G001094	Wax gourd	cmowgoB0822
CmoCh04G024140	CsGy5G014620	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G024140	Carg01478	Silver-seed gourd	carcmoB1121
CmoCh04G024140	Carg18252	Silver-seed gourd	carcmoB0716

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G024140	CmoCh15G007510	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:

None