ClCG03G008900 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G008900
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Descriptionstructural constituent of ribosome LENGTH=282
LocationCG_Chr03 : 11242488 .. 11243471 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATTTCTCCGCCGAACGCAACTTGTTTACCAAACTTAAGATGATCGTCTCATCATTCTTCGGTTTCCTTCTCTGCGCATCCAGTTTTCGATTCCCCATGCAAAACCACACCCAAAGTTCACTCCTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGTACCATTCTCAATTTCTGGACTCAAAGCCCTAATTTCTTCCGAAGAAGATCAAGAAAATGGACAACAATTAATCGAAAATCGAGTGATTCGCAGTATTGGAGTCGGCATTATCAGGTCAAATCTGTTGACTCATTCCTCTTCTTCTTTTTGTTCCATCAGATCTTGTAATTTGTTAATGGACGATTTGATCGGGACGGAGAGCGGCGTTTGCTTAACTTCCAATTCTGAAGAAATCGAAGAGAAATTAACTCATTTCGATTTCGATTGCCGTCATTATCGCACTAATCGCCACGATTTCACTGTGCAAAATCAACGGCGTGTTGCCAAAAAACAGTTTCCACCGCCGATTCGTTTTCTAGCGGTACAGACTGCAGGGCATCGGCCTCGATCGCCATGGATCTTAACAAGATATTGCTCAAATAGAAGGTTGATTTTGAAACTGGAGAGAGTGATGCAGCATCAGTCTTTGGAATCGCGCCGCGAAAATGGCCGTTTAATTCTCAATCTCGTACCAATTGACGATCAGGATCTTCAGTACTTCATTGAAGAAGACGAAGGAAATGAGGAGATCGACAAATCGATTGAATGTGGAGGAGGAGAAGATGAAGGTACAGATTCTGAAATTGCTTTCAAGAGTTTTACGTACGGCGGAGAGGGCGGCGGAGGAATAATGTTTTGTGGTGTAAATGGTAATTTTGAAGAACGACATGTCGTTCATGGACATTTTGGTTCGGCTCCTCTTCGTCCGATGGGTACAGTTATGTGAGTTTGTAAAAGTTGAGCGGTCGCTATTAAAGGCGTAGAGAAACAGATTTAG

mRNA sequence

ATGGATTATTTCTCCGCCGAACGCAACTTGTTTACCAAACTTAAGATGATCGTCTCATCATTCTTCGGTTTCCTTCTCTGCGCATCCAGTTTTCGATTCCCCATGCAAAACCACACCCAAAGTTCACTCCTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGTACCATTCTCAATTTCTGGACTCAAAGCCCTAATTTCTTCCGAAGAAGATCAAGAAAATGGACAACAATTAATCGAAAATCGAGTGATTCGCAGTATTGGAGTCGGCATTATCAGGTCAAATCTGTTGACTCATTCCTCTTCTTCTTTTTGTTCCATCAGATCTTGTAATTTGTTAATGGACGATTTGATCGGGACGGAGAGCGGCGTTTGCTTAACTTCCAATTCTGAAGAAATCGAAGAGAAATTAACTCATTTCGATTTCGATTGCCGTCATTATCGCACTAATCGCCACGATTTCACTGTGCAAAATCAACGGCGTGTTGCCAAAAAACAGTTTCCACCGCCGATTCGTTTTCTAGCGGTACAGACTGCAGGGCATCGGCCTCGATCGCCATGGATCTTAACAAGATATTGCTCAAATAGAAGGTTGATTTTGAAACTGGAGAGAGTGATGCAGCATCAGTCTTTGGAATCGCGCCGCGAAAATGGCCGTTTAATTCTCAATCTCGTACCAATTGACGATCAGGATCTTCAGTACTTCATTGAAGAAGACGAAGGAAATGAGGAGATCGACAAATCGATTGAATGTGGAGGAGGAGAAGATGAAGGTACAGATTCTGAAATTGCTTTCAAGAGTTTTACGTACGGCGGAGAGGGCGGCGGAGGAATAATGTTTTGTGGTGTAAATGGTAATTTTGAAGAACGACATGTCGTTCATGGACATTTTGGTTCGGCTCCTCTTCGTCCGATGGCGGTCGCTATTAAAGGCGTAGAGAAACAGATTTAG

Coding sequence (CDS)

ATGGATTATTTCTCCGCCGAACGCAACTTGTTTACCAAACTTAAGATGATCGTCTCATCATTCTTCGGTTTCCTTCTCTGCGCATCCAGTTTTCGATTCCCCATGCAAAACCACACCCAAAGTTCACTCCTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGTACCATTCTCAATTTCTGGACTCAAAGCCCTAATTTCTTCCGAAGAAGATCAAGAAAATGGACAACAATTAATCGAAAATCGAGTGATTCGCAGTATTGGAGTCGGCATTATCAGGTCAAATCTGTTGACTCATTCCTCTTCTTCTTTTTGTTCCATCAGATCTTGTAATTTGTTAATGGACGATTTGATCGGGACGGAGAGCGGCGTTTGCTTAACTTCCAATTCTGAAGAAATCGAAGAGAAATTAACTCATTTCGATTTCGATTGCCGTCATTATCGCACTAATCGCCACGATTTCACTGTGCAAAATCAACGGCGTGTTGCCAAAAAACAGTTTCCACCGCCGATTCGTTTTCTAGCGGTACAGACTGCAGGGCATCGGCCTCGATCGCCATGGATCTTAACAAGATATTGCTCAAATAGAAGGTTGATTTTGAAACTGGAGAGAGTGATGCAGCATCAGTCTTTGGAATCGCGCCGCGAAAATGGCCGTTTAATTCTCAATCTCGTACCAATTGACGATCAGGATCTTCAGTACTTCATTGAAGAAGACGAAGGAAATGAGGAGATCGACAAATCGATTGAATGTGGAGGAGGAGAAGATGAAGGTACAGATTCTGAAATTGCTTTCAAGAGTTTTACGTACGGCGGAGAGGGCGGCGGAGGAATAATGTTTTGTGGTGTAAATGGTAATTTTGAAGAACGACATGTCGTTCATGGACATTTTGGTTCGGCTCCTCTTCGTCCGATGGCGGTCGCTATTAAAGGCGTAGAGAAACAGATTTAG

Protein sequence

MDYFSAERNLFTKLKMIVSSFFGFLLCASSFRFPMQNHTQSSLLEEEEEEEEEEAVPFSISGLKALISSEEDQENGQQLIENRVIRSIGVGIIRSNLLTHSSSSFCSIRSCNLLMDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNRHDFTVQNQRRVAKKQFPPPIRFLAVQTAGHRPRSPWILTRYCSNRRLILKLERVMQHQSLESRRENGRLILNLVPIDDQDLQYFIEEDEGNEEIDKSIECGGGEDEGTDSEIAFKSFTYGGEGGGGIMFCGVNGNFEERHVVHGHFGSAPLRPMAVAIKGVEKQI
Homology
[Close]
BLAST of ClCG03G008900 vs. TrEMBL
Match: A0A0A0KRM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409650 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 2.9e-111
Identity = 223/333 (66.97%), Postives = 252/333 (75.68%), Query Frame = 1 

Query: 1   MDYFSA-ERNLFTKLKMIVSSFFGFLLCASSFRFPMQNHTQSSLLEEEEEEEEEEAVPFS 60
           MDYFS  + NLFTKLK+IVSSFF FLLC+S+FRFP+Q H +   L           + FS
Sbjct: 1   MDYFSGGQPNLFTKLKIIVSSFFNFLLCSSTFRFPIQKHNRIPPL----------LLSFS 60

Query: 61  ISG-LKALISSEEDQENGQQLIENRVIRSIGVGIIRSNLLTHSSSS-------------- 120
           ISG LK+LISS+      QQ  E+ VIRS+G+ IIRSNLLTHSSSS              
Sbjct: 61  ISGGLKSLISSK------QQFTEDPVIRSVGLAIIRSNLLTHSSSSSSSASSSSSSSSSF 120

Query: 121 -FCSIRSCNLLMDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNRHDFTVQNQRRV 180
            F SIRSCN  MDDLIGTESGVCLTSNSEE+E   TH DFDC +YRT+RH F +QNQR V
Sbjct: 121 CFSSIRSCNFSMDDLIGTESGVCLTSNSEEME---THSDFDCPYYRTDRHHFILQNQRCV 180

Query: 181 AKKQFPPPIRFLAVQTAGHRPRSPWILTRYCSNRRLILKLERVMQHQSLESRRENGRLIL 240
            KKQFPPPI F+A Q AG+RPRSPW+LTRY SNRRLILKLERV QHQSLESRRENGRLIL
Sbjct: 181 LKKQFPPPIPFIATQAAGNRPRSPWVLTRYYSNRRLILKLERVTQHQSLESRRENGRLIL 240

Query: 241 NLVPIDDQD---LQYFIEEDEGNEEIDKSIECGGGEDEGTDSEIAFKSFTYGGE---GGG 300
           NLVPID++D    Q+ IEE EGNEEI +SI+C GGEDEGTDSEI+ +S+TYGGE   GGG
Sbjct: 241 NLVPIDERDQDHFQHLIEEKEGNEEIVESIDCDGGEDEGTDSEISIRSYTYGGEGGGGGG 300

Query: 301 GIMFCGVNGNFEERHVVHGHFGSAPLRPMAVAI 311
           G+ FCG NGNFEERHVVHGHFGSAPLRPM   +
Sbjct: 301 GMTFCGANGNFEERHVVHGHFGSAPLRPMGTVM 314

[Close]
BLAST of ClCG03G008900 vs. TrEMBL
Match: B9H771_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16470g PE=4 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 7.0e-20
Identity = 66/175 (37.71%), Postives = 103/175 (58.86%), Query Frame = 1 

Query: 92  IIRSNLLTHSSSSFCSIRSCNLLMDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTN 151
           ++RS  LT++SSS+ S   C+  +DDLIGTESGV + +N EE   ++   +     Y+  
Sbjct: 63  LVRS--LTNNSSSYSS---CSSALDDLIGTESGVYMNANIEEETAQMEKLESYHHQYK-- 122

Query: 152 RHDFTVQNQRRVAKKQFPPPIRFLAVQTAGHRPRSPWILTRYCSNRRLILKLERVMQHQS 211
                 + QR   +K++PPPI  LA +T       PWILTR+  + RL+L  ERV  H+ 
Sbjct: 123 ------RKQRYATRKKYPPPIPLLA-RTGNLPGHMPWILTRHYIDGRLVLVEERVKNHEY 182

Query: 212 LESRRENGRLILNLVPIDDQ-DLQYFIEEDEGNEEID--KSIECGGGEDEGTDSE 264
            E++RENGRL+LN+VP+DD+    +F+ ++E  +E+    S+E    ++   D E
Sbjct: 183 FEAQRENGRLVLNIVPLDDKITCSHFVSKNEEQKELQDVDSLEKNSDQEFDDDDE 223

[Close]
BLAST of ClCG03G008900 vs. TrEMBL
Match: A0A067KKE3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12002 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 92/277 (33.21%), Postives = 133/277 (48.01%), Query Frame = 1 

Query: 1   MDYFSAERNLFTKLKMIVSSFFGFLLCASSFRFPMQNHTQSSLLEEEEEEEEEEAVPFSI 60
           MD +  + +LF K K I SS FG +L ++    P Q    S                   
Sbjct: 1   MDIYKEKVSLFYKAKSIASSLFGIVLWSAILSAPRQISISS------------------- 60

Query: 61  SGLKALISSEEDQENGQQLIENRVIR---SIGVGIIRSNLLTHSSSSFCSIRSCNLLMDD 120
            GLK L+ S+ +  + Q ++ +  I    S       ++L    SSSFCS  S + ++DD
Sbjct: 61  -GLKTLVYSQRESSS-QFIVHSYTISPPPSSSSLSTSASLSMSLSSSFCS--SWSSMLDD 120

Query: 121 LIGTESGVCLTSNSEEIE----EKLTHFDFDCRHYRTNRHDFTVQNQRRVA-KKQFPPPI 180
           LIGT+SGV L  + EE E    EK+  +   C       H+   +NQ     KK++PPPI
Sbjct: 121 LIGTDSGVHLDPSEEEAEIPRMEKMEKYSNKC-------HNLGKRNQELCEMKKKYPPPI 180

Query: 181 RFLAVQTA--GHRPRSPWILTRYCSNRRLILKLERVMQHQSLESRRENGRLILNLVPIDD 240
             LA  +   GH PR   ILTR+  + RLIL+ E+V  H+  E+ RENG LIL LV ++D
Sbjct: 181 PLLARTSNLDGHMPR---ILTRHYCDGRLILREEKVKHHEYFEAYRENGTLILKLVQLND 240

Query: 241 ------------------QDLQYFIEEDEGNEEIDKS 250
                             QDLQ  + E++G++E  +S
Sbjct: 241 TVECCHSCNCEKKEEIEMQDLQ--LMEEDGSQEDQES 242

[Close]
BLAST of ClCG03G008900 vs. TrEMBL
Match: M5XJE1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020391mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 66/169 (39.05%), Postives = 94/169 (55.62%), Query Frame = 1 

Query: 95  SNLLTHSSSSFCSIRSCNLLMDDLIGTESGV--CLTSNSEEIE--EKLTHFDFDCRHYRT 154
           S+ LT S     S+   +  MDDLIGT+SGV   LT   E++   +    F    R+   
Sbjct: 57  SSSLTSSCMLDSSLSWSSSAMDDLIGTDSGVPIMLTKEQEKLGFLKNTVEFSMSRRNEAK 116

Query: 155 NRHDFTVQNQRRVAKKQFPPPIRFLAVQTAGHRPRSPWILTRYC--SNRRLILKLERVMQ 214
           +    T +   ++ K+++PPPI  LA QT   + R PWI T++   SN RL+LK ERV  
Sbjct: 117 STRSTTTRRSEKI-KREYPPPIPLLA-QTGNLQGRMPWIFTKHYDHSNGRLVLKGERVKH 176

Query: 215 HQSLESRRENGRLILNLVPID------DQDLQYFIEEDEGNEEIDKSIE 252
           H+  E+RRE+GRLILNLVP+D      D  L    EE+E   E+D+ ++
Sbjct: 177 HEYFEARREDGRLILNLVPLDNALACFDSALTCCDEENEEELEMDEDLQ 223

[Close]
BLAST of ClCG03G008900 vs. TrEMBL
Match: B9RJE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033420 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 65/149 (43.62%), Postives = 83/149 (55.70%), Query Frame = 1 

Query: 99  THSSSSFCSIR------SCNLLMDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNR 158
           T SSS F S+       S + ++DDLIGTESGVCL S    IEE+ T        Y  N 
Sbjct: 51  TSSSSLFQSVADSSPYSSWSSMLDDLIGTESGVCLNSG---IEERATIMWKHEAGYHPNH 110

Query: 159 HDFTVQNQRRVAKKQFPPPIRFLAVQTAGHRPRSPWILTRYCSNRRLILKLERVMQHQSL 218
                Q   +  +K++PP I  LA +T      +PWILTR+  N RLIL+ ER+  H+  
Sbjct: 111 GKRDQQQCEK--RKRYPPTIPLLA-RTGNLPSHTPWILTRHYFNGRLILREERLEHHEYF 170

Query: 219 ESRRENGRLILNLVPIDDQDLQYFIEEDE 242
           ES RENGRLIL L+ I   D+ Y  EE+E
Sbjct: 171 ESYRENGRLILKLIRIPFDDIAYDDEEEE 193

[Close]
BLAST of ClCG03G008900 vs. TAIR10
Match: AT1G22110.1 (AT1G22110.1 structural constituent of ribosome)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-15
Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 1 

Query: 93  IRSNLLTHSSSSFCSIRSCNLLMDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNR 152
           + S++L+ +SSS  S       + D IGTES   + S  E  +      +     +R   
Sbjct: 33  VTSSMLSRTSSSSSSA------VGDYIGTESCFDILSADEGNDVVSVASEPVKSRFRYGG 92

Query: 153 HDFTVQNQRRVAKKQFPPPIRFLAVQTAGHRPRSPWILTRYC-SNRRLILKLERVMQHQS 212
                +  R  A ++FPPPI  LA QT    P  PW+L R   S+ RLIL+ E+V  H+ 
Sbjct: 93  RRREEREARAAAAREFPPPIPLLA-QTGNLLPHMPWVLKRVVTSDGRLILREEKVRHHEY 152

Query: 213 LESRRENGRLILNLVPIDD-------QDLQYFIEEDEGNEEIDKSIECGGGEDEGTDSEI 265
             + R NGRL L+LVP+DD       +   Y  +++E ++E D   EC   + +  + ++
Sbjct: 153 FRANRSNGRLTLHLVPLDDDVFDLPQEPSHYQSDDEEDDDECDDEDECDDDDQQEVEDDL 205

[Close]
BLAST of ClCG03G008900 vs. NCBI nr
Match: gi|700195845|gb|KGN51022.1| (hypothetical protein Csa_5G409650 [Cucumis sativus])

HSP 1 Score: 409.8 bits (1052), Expect = 4.2e-111
Identity = 223/333 (66.97%), Postives = 252/333 (75.68%), Query Frame = 1 

Query: 1   MDYFSA-ERNLFTKLKMIVSSFFGFLLCASSFRFPMQNHTQSSLLEEEEEEEEEEAVPFS 60
           MDYFS  + NLFTKLK+IVSSFF FLLC+S+FRFP+Q H +   L           + FS
Sbjct: 1   MDYFSGGQPNLFTKLKIIVSSFFNFLLCSSTFRFPIQKHNRIPPL----------LLSFS 60

Query: 61  ISG-LKALISSEEDQENGQQLIENRVIRSIGVGIIRSNLLTHSSSS-------------- 120
           ISG LK+LISS+      QQ  E+ VIRS+G+ IIRSNLLTHSSSS              
Sbjct: 61  ISGGLKSLISSK------QQFTEDPVIRSVGLAIIRSNLLTHSSSSSSSASSSSSSSSSF 120

Query: 121 -FCSIRSCNLLMDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNRHDFTVQNQRRV 180
            F SIRSCN  MDDLIGTESGVCLTSNSEE+E   TH DFDC +YRT+RH F +QNQR V
Sbjct: 121 CFSSIRSCNFSMDDLIGTESGVCLTSNSEEME---THSDFDCPYYRTDRHHFILQNQRCV 180

Query: 181 AKKQFPPPIRFLAVQTAGHRPRSPWILTRYCSNRRLILKLERVMQHQSLESRRENGRLIL 240
            KKQFPPPI F+A Q AG+RPRSPW+LTRY SNRRLILKLERV QHQSLESRRENGRLIL
Sbjct: 181 LKKQFPPPIPFIATQAAGNRPRSPWVLTRYYSNRRLILKLERVTQHQSLESRRENGRLIL 240

Query: 241 NLVPIDDQD---LQYFIEEDEGNEEIDKSIECGGGEDEGTDSEIAFKSFTYGGE---GGG 300
           NLVPID++D    Q+ IEE EGNEEI +SI+C GGEDEGTDSEI+ +S+TYGGE   GGG
Sbjct: 241 NLVPIDERDQDHFQHLIEEKEGNEEIVESIDCDGGEDEGTDSEISIRSYTYGGEGGGGGG 300

Query: 301 GIMFCGVNGNFEERHVVHGHFGSAPLRPMAVAI 311
           G+ FCG NGNFEERHVVHGHFGSAPLRPM   +
Sbjct: 301 GMTFCGANGNFEERHVVHGHFGSAPLRPMGTVM 314

[Close]
BLAST of ClCG03G008900 vs. NCBI nr
Match: gi|778702534|ref|XP_011655221.1| (PREDICTED: uncharacterized protein LOC105435501 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 1.5e-103
Identity = 209/318 (65.72%), Postives = 238/318 (74.84%), Query Frame = 1 

Query: 1   MDYFSA-ERNLFTKLKMIVSSFFGFLLCASSFRFPMQNHTQSSLLEEEEEEEEEEAVPFS 60
           MDYFS  + NLFTKLK+IVSSFF FLLC+S+FRFP+Q H +   L           + FS
Sbjct: 1   MDYFSGGQPNLFTKLKIIVSSFFNFLLCSSTFRFPIQKHNRIPPL----------LLSFS 60

Query: 61  ISG-LKALISSEEDQENGQQLIENRVIRSIGVGIIRSNLLTHSSSSFCSIRSCNLLMDDL 120
           ISG LK+LISS+      QQ  E+ VIRS+G+ IIRS               CN  MDDL
Sbjct: 61  ISGGLKSLISSK------QQFTEDPVIRSVGLAIIRS---------------CNFSMDDL 120

Query: 121 IGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNRHDFTVQNQRRVAKKQFPPPIRFLAVQ 180
           IGTESGVCLTSNSEE+E   TH DFDC +YRT+RH F +QNQR V KKQFPPPI F+A Q
Sbjct: 121 IGTESGVCLTSNSEEME---THSDFDCPYYRTDRHHFILQNQRCVLKKQFPPPIPFIATQ 180

Query: 181 TAGHRPRSPWILTRYCSNRRLILKLERVMQHQSLESRRENGRLILNLVPIDDQD---LQY 240
            AG+RPRSPW+LTRY SNRRLILKLERV QHQSLESRRENGRLILNLVPID++D    Q+
Sbjct: 181 AAGNRPRSPWVLTRYYSNRRLILKLERVTQHQSLESRRENGRLILNLVPIDERDQDHFQH 240

Query: 241 FIEEDEGNEEIDKSIECGGGEDEGTDSEIAFKSFTYGGE---GGGGIMFCGVNGNFEERH 300
            IEE EGNEEI +SI+C GGEDEGTDSEI+ +S+TYGGE   GGGG+ FCG NGNFEERH
Sbjct: 241 LIEEKEGNEEIVESIDCDGGEDEGTDSEISIRSYTYGGEGGGGGGGMTFCGANGNFEERH 284

Query: 301 VVHGHFGSAPLRPMAVAI 311
           VVHGHFGSAPLRPM   +
Sbjct: 301 VVHGHFGSAPLRPMGTVM 284

[Close]
BLAST of ClCG03G008900 vs. NCBI nr
Match: gi|659121100|ref|XP_008460499.1| (PREDICTED: uncharacterized protein LOC103499299 [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 9.2e-82
Identity = 158/209 (75.60%), Postives = 173/209 (82.78%), Query Frame = 1 

Query: 115 MDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNRHDFTVQNQRRVAKKQFPPPIRF 174
           MDDLIGTESGVCLTSNSEE+E   TH DFDCR YRTNRH+F +QNQR + KKQ+PPPI F
Sbjct: 1   MDDLIGTESGVCLTSNSEEME---THSDFDCRCYRTNRHNFALQNQRCMLKKQYPPPIPF 60

Query: 175 LAVQTAGHRPRSPWILTRYCSNRRLILKLERVMQHQSLESRRENGRLILNLVPIDDQD-- 234
           +A Q AG+RPRSPWILTRY SNRRLILKLERV QHQSLESRRENGRLILNLVPI+D+   
Sbjct: 61  IATQAAGNRPRSPWILTRYYSNRRLILKLERVTQHQSLESRRENGRLILNLVPIEDRQDH 120

Query: 235 LQYFIEEDEGNEEIDKSIECGGGEDEGTDSEIAFKSFTYGGE-----------GGGGIMF 294
           LQ+ IEE EG+EEI +SIEC GGEDEGTDSEI+FKS TYGGE           GGGG+MF
Sbjct: 121 LQHLIEEKEGDEEIVESIECDGGEDEGTDSEISFKSCTYGGEGGGGGGGGGGGGGGGMMF 180

Query: 295 CGVNGNFEERHVVHGHFGSAPLRPMAVAI 311
           CGVNGNFEERHVVHGH GSAPLRPM   +
Sbjct: 181 CGVNGNFEERHVVHGHLGSAPLRPMGTVM 206

[Close]
BLAST of ClCG03G008900 vs. NCBI nr
Match: gi|743932147|ref|XP_011010363.1| (PREDICTED: uncharacterized protein LOC105115219 [Populus euphratica])

HSP 1 Score: 109.8 bits (273), Expect = 9.0e-21
Identity = 88/270 (32.59%), Postives = 138/270 (51.11%), Query Frame = 1 

Query: 6   AERNLFTKLKMIVSSFFGFLLCASSFRFPMQNHTQSSLLEEEEEEEEEEAVPFSISGLKA 65
           +E +LF K K +VS+ FG ++  S+   PM+  ++                  + SGLK 
Sbjct: 5   SEGSLFCKAKSVVSTLFGIMIWKSASPSPMRFPSEWP----------------AYSGLKT 64

Query: 66  LI--SSEEDQENGQQL--IENRVIR-------SIGVGIIRSNLLTHSSSSFCSIRSCNLL 125
           L+  S   DQ    +   + + +I        S    ++R  LLT SSS      SC+  
Sbjct: 65  LLLHSRGPDQNLTHKCYTLHSYMISAPSPPSWSTSPPLVR--LLTSSSS----YSSCSSA 124

Query: 126 MDDLIGTESGVCLTSNSEEIEEKLTHFDFDCRHYRTNRHDFTVQNQRRVAKKQFPPPIRF 185
           +DDLIGTESGV + +N   +EE       +  H++  R       QR   +K++PPPI  
Sbjct: 125 LDDLIGTESGVYMNANI--VEEAAQMEKLESYHHQDKR------KQRYATRKKYPPPIPL 184

Query: 186 LAVQTAGHRPRSPWILTRYCSNRRLILKLERVMQHQSLESRRENGRLILNLVPIDDQDL- 245
           LA +T     + PWILTR+  + RL+L  ERV   +  E++RENGRL+LN+VP+DD+ + 
Sbjct: 185 LA-RTGNLPGQMPWILTRHYIDGRLVLVEERVKNREYFEAQRENGRLVLNIVPLDDKTIC 243

Query: 246 QYFIEEDEGNEEIDKSIECGGGEDEGTDSE 264
            +F+ ++E ++E+      G   D+  D E
Sbjct: 245 SHFVSKNEKDKELQDVDFLGKNSDQQFDEE 243

[Close]
BLAST of ClCG03G008900 vs. NCBI nr
Match: gi|694440835|ref|XP_009347214.1| (PREDICTED: protein FAF-like, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 80/210 (38.10%), Postives = 113/210 (53.81%), Query Frame = 1 

Query: 62  GLKALISSEEDQENGQQLIENRVIRSIGVGIIRSNLLTHSSSSFCSIRSCNLLMDDLIGT 121
           GLK LI  E        +I N  +        R++ L+ S     S    +  MDDLIGT
Sbjct: 16  GLKTLIFPEATTNADPHVIHNHKLSLHSPSTSRTSSLSSSVLMDSSSSWSSSAMDDLIGT 75

Query: 122 ESGVCLTSNSEEIEEKLTHFDFDCRHYRTNRHDFTVQNQRRVAKKQFPPPIRFLAVQTAG 181
           ESG  + SN E+  EKL   +   +   T     T +++R + K+++PPPI  LA QT  
Sbjct: 76  ESGAPIMSNEEQ--EKLELLNNQDKGKTT-----TKKSERIMIKREYPPPIPLLA-QTGN 135

Query: 182 HRPRSPWILTRYC--SNRRLILKLERVMQHQSLESRRENGRLILNLVPIDDQDL-----Q 241
              R PW+LT++   S+ RL+LK ERV  H+  E+ RENGRLILNLVP+D+  +     Q
Sbjct: 136 LHGRMPWVLTKHYNYSDGRLVLKGERVKHHEYFEALRENGRLILNLVPLDNNAIICCEHQ 195

Query: 242 YFIEEDEGNEEIDKSIECGGGEDEGTDSEI 265
             I+E+E  E+ D  ++   GED G  +EI
Sbjct: 196 ETIDEEEDMEKEDLFVD---GEDNGEQTEI 214

The following BLAST results are available for this feature:
BLAST of ClCG03G008900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRM2_CUCSA2.9e-11166.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409650 PE=4 SV=1[more]
B9H771_POPTR7.0e-2037.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16470g PE=4 SV=2[more]
A0A067KKE3_JATCU5.0e-1833.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12002 PE=4 SV=1[more]
M5XJE1_PRUPE1.2e-1639.05Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020391mg PE=4 SV=1[more]
B9RJE8_RICCO6.1e-1643.62Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033420 PE=4 SV=1[more]
BLAST of ClCG03G008900 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22110.14.6e-1531.11 structural constituent of ribosome[more]
BLAST of ClCG03G008900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195845|gb|KGN51022.1|4.2e-11166.97hypothetical protein Csa_5G409650 [Cucumis sativus][more]
gi|778702534|ref|XP_011655221.1|1.5e-10365.72PREDICTED: uncharacterized protein LOC105435501 [Cucumis sativus][more]
gi|659121100|ref|XP_008460499.1|9.2e-8275.60PREDICTED: uncharacterized protein LOC103499299 [Cucumis melo][more]
gi|743932147|ref|XP_011010363.1|9.0e-2132.59PREDICTED: uncharacterized protein LOC105115219 [Populus euphratica][more]
gi|694440835|ref|XP_009347214.1|1.5e-2038.10PREDICTED: protein FAF-like, chloroplastic [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021410FAF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G008900.1ClCG03G008900.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021410The fantastic four familyPFAMPF11250FAFcoord: 167..225
score: 6.9
NoneNo IPR availablePANTHERPTHR33155FAMILY NOT NAMEDcoord: 59..266
score: 5.7
NoneNo IPR availablePANTHERPTHR33155:SF11SUBFAMILY NOT NAMEDcoord: 59..266
score: 5.7