CmoCh04G014180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G014180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ATP-dependent RNA helicase DBP7
Location	Cmo_Chr04 : 7226502 .. 7227609 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTGCTTCCATTTTTCTGGGTATTATCCTGTCCTTGCTTCTGTTTGTGAATTTCTGCTTTGCAGAAGAAGAAAATGTTGCTGAACTCCACTCTGCCCAAGGTACTTTACTTACATTTTAAAGCATTTTGAGGCTTATTTTCTTGTTTTGCTCAACCCCTTTTAATGAAAACGGTAGTTCTTTGCACACATTCTGTATTCTTTGTCTAATGTTGTTCAATAAGAGGTCAAGATGGCCGACCCAGAAGTAAACTTGTATTGTATTTTAGTTTAGAGAGGTCGATGAATTACTACGATCTATAGAATCTAGTCGCTTCGGGCTAAAATTCCAATGAAACCAAGTGATAGTAAGGATTGTAATGAAGGGAATTTTATATGCAGGTGCTGCTGGTGTAGCAGCTAAAAATGGAGAGGAAGACCAAGAAGAGAAATTCATGTTTCTTCATCACCACAAGCCATACTTGAAGAAGCCATTTCTAAAGCCAATTCCATATAAACATCCTTTTCTGAAGAAGCCAATCCCAGTTCATCATCCATTTCTCAAGAAGCCAATCCCCATTCATCCATTCCTCAAGAAGCCAGTTCCAAAGCCACTTAACCCACCAGTCTTCGCCACCCATCCTTGAAATATGTTAAAAAAGAAGGCTCAGTTCTATTATTATTACTGTTTGTCTGTTTAATTGTAGAATTGGATGAAGTTATTTCCAATTCAAATAAAGCTCTGTTTCTATTTCTGTTAAAATAACTGTGTTAGTTTCAAATATGAAGCTTCTGTTCGTTTACCAATGGATCAGTTTAAGCACTGCTGAACTCCTCCTGTTGATTTTGATCCAAGAAATCCTTGAGAGAGTAAGAGAAGTGTTGGGTCAGGTCTAAGAGTGTTTGTGAAATCCCGGAAATCCCAATTGGCGAGTTATGTCTTAAACTTAGCTATGTTTGTGGAATCCTCGTTTGTAGAACAATAATCAATGAGCCTAACAAAACATAGTCATCAGTAAAACTTCAAAATATCAAACAAGTGTGGCTCGAAAGAGTTGGCTAGTGCCATGTATTCCACGATGTGATCTAAGGTCGAGGAATTGGCTCGAATAAGAGAGATCGGAG

mRNA sequence

ATGAAAACTGCTTCCATTTTTCTGGGTATTATCCTGTCCTTGCTTCTGTTTGTGAATTTCTGCTTTGCAGAAGAAGAAAATGTTGCTGAACTCCACTCTGCCCAAGGTGCTGCTGGTGTAGCAGCTAAAAATGGAGAGGAAGACCAAGAAGAGAAATTCATGTTTCTTCATCACCACAAGCCATACTTGAAGAAGCCATTTCTAAAGCCAATTCCATATAAACATCCTTTTCTGAAGAAGCCAATCCCAGTTCATCATCCATTTCTCAAGAAGCCAATCCCCATTCATCCATTCCTCAAGAAGCCAGTTCCAAAGCCACTTAACCCACCAGTCTTCGCCACCCATCCTTGAAATATGTTAAAAAAGAAGGCTCAGTTCTATTATTATTACTGTTTGTCTGTTTAATTGTAGAATTGGATGAAGTTATTTCCAATTCAAATAAAGCTCTGTTTCTATTTCTGTTAAAATAACTGTGTTAGTTTCAAATATGAAGCTTCTGTTCGTTTACCAATGGATCAGTTTAAGCACTGCTGAACTCCTCCTGTTGATTTTGATCCAAGAAATCCTTGAGAGAGTAAGAGAAGTGTTGGGTCAGGTCTAAGAGTGTTTGTGAAATCCCGGAAATCCCAATTGGCGAGTTATGTCTTAAACTTAGCTATGTTTGTGGAATCCTCGTTTGTAGAACAATAATCAATGAGCCTAACAAAACATAGTCATCAGTAAAACTTCAAAATATCAAACAAGTGTGGCTCGAAAGAGTTGGCTAGTGCCATGTATTCCACGATGTGATCTAAGGTCGAGGAATTGGCTCGAATAAGAGAGATCGGAG

Coding sequence (CDS)

ATGAAAACTGCTTCCATTTTTCTGGGTATTATCCTGTCCTTGCTTCTGTTTGTGAATTTCTGCTTTGCAGAAGAAGAAAATGTTGCTGAACTCCACTCTGCCCAAGGTGCTGCTGGTGTAGCAGCTAAAAATGGAGAGGAAGACCAAGAAGAGAAATTCATGTTTCTTCATCACCACAAGCCATACTTGAAGAAGCCATTTCTAAAGCCAATTCCATATAAACATCCTTTTCTGAAGAAGCCAATCCCAGTTCATCATCCATTTCTCAAGAAGCCAATCCCCATTCATCCATTCCTCAAGAAGCCAGTTCCAAAGCCACTTAACCCACCAGTCTTCGCCACCCATCCTTGA

Homology

[Close]

BLAST of CmoCh04G014180 vs. TrEMBL
Match: E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-41
Identity = 91/129 (70.54%), Postives = 101/129 (78.29%), Query Frame = 1


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           M+TA IFLGI+LS LL VNFC+A EE+VAE    +GAAGV AKNGEE+QEEKF FLHHHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYLKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPV-------------PKPL 117
           PY KKPFLKPIPYKHPFLKKPIPV HPF KKPIP+HPFLKKP+              KP+
Sbjct: 439 PYYKKPFLKPIPYKHPFLKKPIPV-HPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 498

[Close]

BLAST of CmoCh04G014180 vs. TrEMBL
Match: A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-35
Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           MKTA IFLGI+LS LL VNFC+A EE+V E  S +GAAGV AKNGEE ++EKF FL HHK
Sbjct: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHK 60

Query: 61  PYLKKPFLKPIPYKHPFLKKPIPVHH------PFLKKPIPIHPFLKKPVPKPLNPPVFAT 117
           PY KKPFLKPIPYKHPFLKKPIPVH        F KKP+P+HPF KKP+    +PPVF T
Sbjct: 61  PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPID---HPPVFHT 118

[Close]

BLAST of CmoCh04G014180 vs. TrEMBL
Match: A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 47/109 (43.12%), Postives = 55/109 (50.46%), Query Frame = 1


Query: 8   LGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHKPYLKKPF 67
           + I LSL L +NFC+A EEN      AQGA     KNGEE +EEKF FL  H P+ KKP 
Sbjct: 1   MAIFLSLFLLLNFCYAAEENEDAFLPAQGAG--ITKNGEEAKEEKFKFLPDHIPFYKKPI 60

Query: 68  LKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPVPKPLNPPVFATHP 117
            K IP +                      P +KKP PKP  PPV  +HP
Sbjct: 61  FKTIPRQ----------------------PIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of CmoCh04G014180 vs. TrEMBL
Match: A0A0L9V2T3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g008300 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 47/121 (38.84%), Postives = 61/121 (50.41%), Query Frame = 1


Query: 8   LGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNG------------EEDQEEKFMF 67
           L  IL   L + FC+A    VA   + + +      NG             E+ EE+  F
Sbjct: 7   LNAILRFGLVITFCYA----VAAAATTEVSGTEVNTNGKLESEELTKTTLNENYEEEKFF 66

Query: 68  LHHHKPYLKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPVPKPLNPPVFATH 117
            HHHKP  KKPF KP+P   PF+ KPIPV+ P+  KP+P+  +  KPVP     PVF  H
Sbjct: 67  FHHHKPLFKKPFFKPVPKPIPFV-KPIPVYKPY-PKPVPVPVYKPKPVP----VPVFKPH 117

[Close]

BLAST of CmoCh04G014180 vs. TrEMBL
Match: A0A0S3S8U5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G014100 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 47/121 (38.84%), Postives = 61/121 (50.41%), Query Frame = 1


Query: 8   LGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNG------------EEDQEEKFMF 67
           L  IL   L + FC+A    VA   + + +      NG             E+ EE+  F
Sbjct: 7   LNAILRFGLVITFCYA----VAAAATTEVSGTEVNTNGKLESEELTKTTLNENYEEEKFF 66

Query: 68  LHHHKPYLKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPVPKPLNPPVFATH 117
            HHHKP  KKPF KP+P   PF+ KPIPV+ P+  KP+P+  +  KPVP     PVF  H
Sbjct: 67  FHHHKPLFKKPFFKPVPKPIPFV-KPIPVYKPY-PKPVPVPVYKPKPVP----VPVFKPH 117

[Close]

BLAST of CmoCh04G014180 vs. NCBI nr
Match: gi|659092159|ref|XP_008446928.1| (PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 4.9e-41
Identity = 91/129 (70.54%), Postives = 101/129 (78.29%), Query Frame = 1


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           M+TA IFLGI+LS LL VNFC+A EE+VAE    +GAAGV AKNGEE+QEEKF FLHHHK
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61  PYLKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPV-------------PKPL 117
           PY KKPFLKPIPYKHPFLKKPIPV HPF KKPIP+HPFLKKP+              KP+
Sbjct: 61  PYYKKPFLKPIPYKHPFLKKPIPV-HPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 120

[Close]

BLAST of CmoCh04G014180 vs. NCBI nr
Match: gi|307136392|gb|ADN34202.1| (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 175.6 bits (444), Expect = 4.9e-41
Identity = 91/129 (70.54%), Postives = 101/129 (78.29%), Query Frame = 1


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           M+TA IFLGI+LS LL VNFC+A EE+VAE    +GAAGV AKNGEE+QEEKF FLHHHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYLKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPV-------------PKPL 117
           PY KKPFLKPIPYKHPFLKKPIPV HPF KKPIP+HPFLKKP+              KP+
Sbjct: 439 PYYKKPFLKPIPYKHPFLKKPIPV-HPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 498

[Close]

BLAST of CmoCh04G014180 vs. NCBI nr
Match: gi|700197124|gb|KGN52301.1| (ATP-dependent RNA helicase DBP7 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 5.3e-35
Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           MKTA IFLGI+LS LL VNFC+A EE+V E  S +GAAGV AKNGEE ++EKF FL HHK
Sbjct: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHK 60

Query: 61  PYLKKPFLKPIPYKHPFLKKPIPVHH------PFLKKPIPIHPFLKKPVPKPLNPPVFAT 117
           PY KKPFLKPIPYKHPFLKKPIPVH        F KKP+P+HPF KKP+    +PPVF T
Sbjct: 61  PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPID---HPPVFHT 118

[Close]

BLAST of CmoCh04G014180 vs. NCBI nr
Match: gi|778706736|ref|XP_011655905.1| (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 5.3e-35
Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           MKTA IFLGI+LS LL VNFC+A EE+V E  S +GAAGV AKNGEE ++EKF FL HHK
Sbjct: 389 MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHK 448

Query: 61  PYLKKPFLKPIPYKHPFLKKPIPVHH------PFLKKPIPIHPFLKKPVPKPLNPPVFAT 117
           PY KKPFLKPIPYKHPFLKKPIPVH        F KKP+P+HPF KKP+    +PPVF T
Sbjct: 449 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPID---HPPVFHT 506

[Close]

BLAST of CmoCh04G014180 vs. NCBI nr
Match: gi|778706732|ref|XP_011655904.1| (PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 50/114 (43.86%), Postives = 58/114 (50.88%), Query Frame = 1


Query: 3   TASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHKPY 62
           T SI + I LSL L +NFC+A EEN      AQGA     KNGEE +EEKF FL  H P+
Sbjct: 64  TISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGAG--ITKNGEEAKEEKFKFLPDHIPF 123

Query: 63  LKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPVPKPLNPPVFATHP 117
            KKP  K IP +                      P +KKP PKP  PPV  +HP
Sbjct: 124 YKKPIFKTIPRQ----------------------PIIKKPFPKPYRPPVLPSHP 153

The following BLAST results are available for this feature:

BLAST of CmoCh04G014180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014180 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCK5_CUCME	3.4e-41	70.54	Annexin OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KWW0_CUCSA	3.7e-35	68.85	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1	[more]
A0A0A0KRM7_CUCSA	2.4e-10	43.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1	[more]
A0A0L9V2T3_PHAAN	9.4e-07	38.84	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g008300 PE=4 SV=1	[more]
A0A0S3S8U5_PHAAN	9.4e-07	38.84	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G014100 PE=...	[more]

BLAST of CmoCh04G014180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092159\|ref\|XP_008446928.1\|	4.9e-41	70.54	PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo]	[more]
gi\|307136392\|gb\|ADN34202.1\|	4.9e-41	70.54	annexin [Cucumis melo subsp. melo]	[more]
gi\|700197124\|gb\|KGN52301.1\|	5.3e-35	68.85	ATP-dependent RNA helicase DBP7 [Cucumis sativus]	[more]
gi\|778706736\|ref\|XP_011655905.1\|	5.3e-35	68.85	PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus]	[more]
gi\|778706732\|ref\|XP_011655904.1\|	3.1e-11	43.86	PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005544	calcium-dependent phospholipid binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014180.1	CmoCh04G014180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G014180	Cucsa.308120	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G014180	CmaCh04G013430	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G014180	Cla009951	Watermelon (97103) v1	cmowmB701
CmoCh04G014180	Csa5G623640	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G014180	MELO3C012454	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G014180	ClCG05G026650	Watermelon (Charleston Gray)	cmowcgB662
CmoCh04G014180	CSPI05G27430	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G014180	Lsi04G000420	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G014180	MELO3C012454.2	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G014180	CsaV3_5G036570	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G014180	Cla97C05G108920	Watermelon (97103) v2	cmowmbB737
CmoCh04G014180	Cla97C05G102460	Watermelon (97103) v2	cmowmbB729
CmoCh04G014180	Bhi07G000763	Wax gourd	cmowgoB0904
CmoCh04G014180	CsGy5G026830	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G014180	Carg01980	Silver-seed gourd	carcmoB1138
CmoCh04G014180	Carg20679	Silver-seed gourd	carcmoB0655

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G014180	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G014180	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G014180	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G014180	Cucurbita pepo (Zucchini)	cmocpeB673