Cla97C05G108920 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G108920
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	proline-rich 33 kDa extensin-related protein-like
Location	Cla97Chr05 : 35462215 .. 35462794 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTGCTGTCATTTTTCTAGGCATTTTGCTGTCTTTGCTTTTGCTTGTGAACTTCTGCTATGCGGCAGAAGAAAGTGTTGATGAATTTCAGTCTGGGAAAGGTACTCCTTTTTTCTTTTTTTTTTTTGGCACTTTGAGGTTCTTCAATCTTTGCTTGTTTTGCACCACTCCTTTTAATGAAAATTGTACTTCTCTTCACATATTATAATATATATATATGTATACACCTTTTTTTTTTTTTTGTCTAGATAAAATTTGTTAGTGAAGGGCATTTTGTTTATACAGATGCAGCTGGTGTAACAGGTAAGAATGGAGATGAAGAGCAAGAAGAGAAATTCAAGTTTCTTCATCACCACAAGCCATACTTCAAGAAACCATTTCTAAAGCCAATTCCATACAAGCATCCTTTTCTGAAGAAGCCAATTCCAGTTCATCCATTTCTCAAGAAACCAATTCCAGTTCACCCATTTCTTAAGAAACCAATTCCAGTTCACCCATTTCTCAAGAAGCCAATTCCAGTTCATCCATTCCTTAAGAAGCCAATTAATCCACCAGTCTTCCACACCCATCCTTGA

mRNA sequence

ATGAAACCTGCTGTCATTTTTCTAGGCATTTTGCTGTCTTTGCTTTTGCTTGTGAACTTCTGCTATGCGGCAGAAGAAAGTGTTGATGAATTTCAGTCTGGGAAAGATGCAGCTGGTGTAACAGGTAAGAATGGAGATGAAGAGCAAGAAGAGAAATTCAAGTTTCTTCATCACCACAAGCCATACTTCAAGAAACCATTTCTAAAGCCAATTCCATACAAGCATCCTTTTCTGAAGAAGCCAATTCCAGTTCATCCATTTCTCAAGAAACCAATTCCAGTTCACCCATTTCTTAAGAAACCAATTCCAGTTCACCCATTTCTCAAGAAGCCAATTCCAGTTCATCCATTCCTTAAGAAGCCAATTAATCCACCAGTCTTCCACACCCATCCTTGA

Coding sequence (CDS)

ATGAAACCTGCTGTCATTTTTCTAGGCATTTTGCTGTCTTTGCTTTTGCTTGTGAACTTCTGCTATGCGGCAGAAGAAAGTGTTGATGAATTTCAGTCTGGGAAAGATGCAGCTGGTGTAACAGGTAAGAATGGAGATGAAGAGCAAGAAGAGAAATTCAAGTTTCTTCATCACCACAAGCCATACTTCAAGAAACCATTTCTAAAGCCAATTCCATACAAGCATCCTTTTCTGAAGAAGCCAATTCCAGTTCATCCATTTCTCAAGAAACCAATTCCAGTTCACCCATTTCTTAAGAAACCAATTCCAGTTCACCCATTTCTCAAGAAGCCAATTCCAGTTCATCCATTCCTTAAGAAGCCAATTAATCCACCAGTCTTCCACACCCATCCTTGA

Protein sequence

MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHKPYFKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKPIPVHPFLKKPIPVHPFLKKPINPPVFHTHP

Homology

[Close]

BLAST of Cla97C05G108920 vs. NCBI nr
Match: ADN34202.1 (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 124.0 bits (310), Expect = 3.7e-25
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHK 60
           M+ A IFLGILLS LLLVNFCYAAEESV EFQ GK AAGVT KNG+EEQEEKFKFLHHHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYFKKPFLKPIP 73
           PY+KKPFLKPIP
Sbjct: 439 PYYKKPFLKPIP 450

[Close]

BLAST of Cla97C05G108920 vs. NCBI nr
Match: XP_008446928.1 (PREDICTED: proline-rich 33 kDa extensin-related protein-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 3.7e-25
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHK 60
          M+ A IFLGILLS LLLVNFCYAAEESV EFQ GK AAGVT KNG+EEQEEKFKFLHHHK
Sbjct: 1  MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61 PYFKKPFLKPIP 73
          PY+KKPFLKPIP
Sbjct: 61 PYYKKPFLKPIP 72

[Close]

BLAST of Cla97C05G108920 vs. NCBI nr
Match: KGN52301.1 (ATP-dependent RNA helicase DBP7 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHK 60
          MK A IFLGILLS LLLVNFCYAAEESV EFQSGK AAGVT KNG EE++EKFKFL HHK
Sbjct: 1  MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNG-EEEDEKFKFLLHHK 60

Query: 61 PYFKKPFLKPIP 73
          PY+KKPFLKPIP
Sbjct: 61 PYYKKPFLKPIP 71

[Close]

BLAST of Cla97C05G108920 vs. NCBI nr
Match: XP_011655905.1 (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHK 60
           MK A IFLGILLS LLLVNFCYAAEESV EFQSGK AAGVT KNG EE++EKFKFL HHK
Sbjct: 389 MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNG-EEEDEKFKFLLHHK 448

Query: 61  PYFKKPFLKPIP 73
           PY+KKPFLKPIP
Sbjct: 449 PYYKKPFLKPIP 459

[Close]

BLAST of Cla97C05G108920 vs. NCBI nr
Match: XP_022138883.1 (uncharacterized protein LOC111009954 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 6.2e-12
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1   MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFL-HHH 60
           MK   I LGILLSLLLLVN C AAE++V EFQ G+DA  +T KNG+  Q EKF+FL HH+
Sbjct: 31  MKTFFISLGILLSLLLLVNVCNAAEKNVAEFQPGQDADDIT-KNGEAVQGEKFRFLSHHN 90

Query: 61  KPYFKKPFLKPIP 73
           KP++KKPF + IP
Sbjct: 91  KPHYKKPFFQQIP 102

[Close]

BLAST of Cla97C05G108920 vs. TrEMBL
Match: tr|A0A1S3BG81|A0A1S3BG81_CUCME (proline-rich 33 kDa extensin-related protein-like OS=Cucumis melo OX=3656 GN=LOC103489493 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHK 60
          M+ A IFLGILLS LLLVNFCYAAEESV EFQ GK AAGVT KNG+EEQEEKFKFLHHHK
Sbjct: 1  MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61 PYFKKPFLKPIP 73
          PY+KKPFLKPIP
Sbjct: 61 PYYKKPFLKPIP 72

[Close]

BLAST of Cla97C05G108920 vs. TrEMBL
Match: tr|E5GCK5|E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHK 60
           M+ A IFLGILLS LLLVNFCYAAEESV EFQ GK AAGVT KNG+EEQEEKFKFLHHHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYFKKPFLKPIP 73
           PY+KKPFLKPIP
Sbjct: 439 PYYKKPFLKPIP 450

[Close]

BLAST of Cla97C05G108920 vs. TrEMBL
Match: tr|A0A0A0KWW0|A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus OX=3659 GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKPAVIFLGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHK 60
          MK A IFLGILLS LLLVNFCYAAEESV EFQSGK AAGVT KNG EE++EKFKFL HHK
Sbjct: 1  MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNG-EEEDEKFKFLLHHK 60

Query: 61 PYFKKPFLKPIP 73
          PY+KKPFLKPIP
Sbjct: 61 PYYKKPFLKPIP 71

[Close]

BLAST of Cla97C05G108920 vs. TrEMBL
Match: tr|A0A0A0KRM7|A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 8  LGILLSLLLLVNFCYAAEESVDEFQSGKDAAGVTGKNGDEEQEEKFKFLHHHKPYFKKPF 67
          + I LSL LL+NFCYAAEE+ D F   +  AG+T KNG+E +EEKFKFL  H P++KKP 
Sbjct: 1  MAIFLSLFLLLNFCYAAEENEDAFLPAQ-GAGIT-KNGEEAKEEKFKFLPDHIPFYKKPI 60

Query: 68 LKPIP 73
           K IP
Sbjct: 61 FKTIP 63

The following BLAST results are available for this feature:

BLAST of Cla97C05G108920 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34202.1	3.7e-25	86.11	annexin [Cucumis melo subsp. melo]	[more]
XP_008446928.1	3.7e-25	86.11	PREDICTED: proline-rich 33 kDa extensin-related protein-like [Cucumis melo]	[more]
KGN52301.1	5.9e-23	84.72	ATP-dependent RNA helicase DBP7 [Cucumis sativus]	[more]
XP_011655905.1	5.9e-23	84.72	PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus]	[more]
XP_022138883.1	6.2e-12	63.01	uncharacterized protein LOC111009954 [Momordica charantia]	[more]

BLAST of Cla97C05G108920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BG81\|A0A1S3BG81_CUCME	2.5e-25	86.11	proline-rich 33 kDa extensin-related protein-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|E5GCK5\|E5GCK5_CUCME	2.5e-25	86.11	Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A0A0KWW0\|A0A0A0KWW0_CUCSA	3.9e-23	84.72	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus OX=3659 GN=Csa_5G623650 PE=4 ...	[more]
tr\|A0A0A0KRM7\|A0A0A0KRM7_CUCSA	5.5e-09	58.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1	[more]

BLAST of Cla97C05G108920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G108920 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005544	calcium-dependent phospholipid binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043167	ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G108920.1	Cla97C05G108920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G108920	Cla009951	Watermelon (97103) v1	wmwmbB207
Cla97C05G108920	Csa5G623640	Cucumber (Chinese Long) v2	cuwmbB379
Cla97C05G108920	MELO3C012454	Melon (DHL92) v3.5.1	mewmbB061
Cla97C05G108920	ClCG05G026650	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G108920	CSPI05G27430	Wild cucumber (PI 183967)	cpiwmbB397
Cla97C05G108920	Cucsa.308120	Cucumber (Gy14) v1	cgywmbB534
Cla97C05G108920	CmaCh04G013430	Cucurbita maxima (Rimu)	cmawmbB765
Cla97C05G108920	CmoCh04G014180	Cucurbita moschata (Rifu)	cmowmbB737
Cla97C05G108920	Lsi04G000420	Bottle gourd (USVL1VR-Ls)	lsiwmbB292
Cla97C05G108920	CsGy5G026830	Cucumber (Gy14) v2	cgybwmbB360
Cla97C05G108920	MELO3C012454.2	Melon (DHL92) v3.6.1	medwmbB057
Cla97C05G108920	Carg01980	Silver-seed gourd	carwmbB0876
Cla97C05G108920	CsaV3_5G036570	Cucumber (Chinese Long) v3	cucwmbB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None