Carg01980 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01980
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	proline-rich 33 kDa extensin-related protein-like
Location	Cucurbita_argyrosperma_scaffold_003 : 1510668 .. 1511297 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTGCTTCCATTTTTCTGGGTATTATCCTGTCCTTGCTTCTGTTTGTGAATTTCTGCTTTGCAGAAGAAGAAAATGTTGCTGAACTCCACTCTGCCCAAGGTACTTTACTTACATTTTAAAGCATTTTGAGGCTTATTTTCTTGTTTTGCTCAACCCCTTTTAATGAAAACTGTAGTTCTTTGCACACATTCTGTATTCTTTGTCTAATGTTGTTCAATAAGAGGTCAAGATGGCCGACCCAGAAGTAAACTTGTATTGTATTTTAGTTTAGAGAGGTCGATGAATTACTACGATCTATAGAATCTAGTCGCTTCGGGCTAAAATTCCAATGAAACCAAGTGATAGTAAGGATTGTAATGAAGGGAATTTTATATGCAGGTGCTGCTGGTGTAGCAGCTAAAAATGGAGAGGAAGACCAAGAAGAGAAATTCATGTTTCTTCATCACCACAAGCCATACTTGAAGAAGCCATTTCTAAAGCCAATTCCATATAAACATCCTTTTCTGAAGAAGCCAATCCCAGTTCATCATCCATTTCTCAAGAAGCCAATCCCCATTCATCCATTCCTCAAGAAGCCAGTTCCAAAGCCACTTAACCCACCAGTCTTCGCCACCCATCCTTGA

mRNA sequence

ATGAAAACTGCTTCCATTTTTCTGGGTATTATCCTGTCCTTGCTTCTGTTTGTGAATTTCTGCTTTGCAGAAGAAGAAAATGTTGCTGAACTCCACTCTGCCCAAGGTGCTGCTGGTGTAGCAGCTAAAAATGGAGAGGAAGACCAAGAAGAGAAATTCATGTTTCTTCATCACCACAAGCCATACTTGAAGAAGCCATTTCTAAAGCCAATTCCATATAAACATCCTTTTCTGAAGAAGCCAATCCCAGTTCATCATCCATTTCTCAAGAAGCCAATCCCCATTCATCCATTCCTCAAGAAGCCAGTTCCAAAGCCACTTAACCCACCAGTCTTCGCCACCCATCCTTGA

Coding sequence (CDS)

ATGAAAACTGCTTCCATTTTTCTGGGTATTATCCTGTCCTTGCTTCTGTTTGTGAATTTCTGCTTTGCAGAAGAAGAAAATGTTGCTGAACTCCACTCTGCCCAAGGTGCTGCTGGTGTAGCAGCTAAAAATGGAGAGGAAGACCAAGAAGAGAAATTCATGTTTCTTCATCACCACAAGCCATACTTGAAGAAGCCATTTCTAAAGCCAATTCCATATAAACATCCTTTTCTGAAGAAGCCAATCCCAGTTCATCATCCATTTCTCAAGAAGCCAATCCCCATTCATCCATTCCTCAAGAAGCCAGTTCCAAAGCCACTTAACCCACCAGTCTTCGCCACCCATCCTTGA

Protein sequence

MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHKPYLKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPVPKPLNPPVFATHP

Homology

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BLAST of Carg01980 vs. NCBI nr
Match: ADN34202.1 (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           M+TA IFLGI+LS LL VNFC+A EE+VAE    +GAAGV AKNGEE+QEEKF FLHHHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYLKKPFLKPI 72
           PY KKPFLKPI
Sbjct: 439 PYYKKPFLKPI 449

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BLAST of Carg01980 vs. NCBI nr
Match: XP_008446928.1 (PREDICTED: proline-rich 33 kDa extensin-related protein-like [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
          M+TA IFLGI+LS LL VNFC+A EE+VAE    +GAAGV AKNGEE+QEEKF FLHHHK
Sbjct: 1  MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61 PYLKKPFLKPI 72
          PY KKPFLKPI
Sbjct: 61 PYYKKPFLKPI 71

[Close]

BLAST of Carg01980 vs. NCBI nr
Match: KGN52301.1 (ATP-dependent RNA helicase DBP7 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
          MKTA IFLGI+LS LL VNFC+A EE+V E  S +GAAGV AKNGEE ++EKF FL HHK
Sbjct: 1  MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHK 60

Query: 61 PYLKKPFLKPI 72
          PY KKPFLKPI
Sbjct: 61 PYYKKPFLKPI 70

[Close]

BLAST of Carg01980 vs. NCBI nr
Match: XP_011655905.1 (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           MKTA IFLGI+LS LL VNFC+A EE+V E  S +GAAGV AKNGEE ++EKF FL HHK
Sbjct: 389 MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHK 448

Query: 61  PYLKKPFLKPI 72
           PY KKPFLKPI
Sbjct: 449 PYYKKPFLKPI 458

[Close]

BLAST of Carg01980 vs. NCBI nr
Match: XP_022138883.1 (uncharacterized protein LOC111009954 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFL-HHH 60
           MKT  I LGI+LSLLL VN C A E+NVAE    Q A  +  KNGE  Q EKF FL HH+
Sbjct: 31  MKTFFISLGILLSLLLLVNVCNAAEKNVAEFQPGQDADDI-TKNGEAVQGEKFRFLSHHN 90

Query: 61  KPYLKKPFLKPI 72
           KP+ KKPF + I
Sbjct: 91  KPHYKKPFFQQI 101

[Close]

BLAST of Carg01980 vs. TrEMBL
Match: tr|A0A1S3BG81|A0A1S3BG81_CUCME (proline-rich 33 kDa extensin-related protein-like OS=Cucumis melo OX=3656 GN=LOC103489493 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.6e-22
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
          M+TA IFLGI+LS LL VNFC+A EE+VAE    +GAAGV AKNGEE+QEEKF FLHHHK
Sbjct: 1  MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61 PYLKKPFLKPI 72
          PY KKPFLKPI
Sbjct: 61 PYYKKPFLKPI 71

[Close]

BLAST of Carg01980 vs. TrEMBL
Match: tr|E5GCK5|E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.6e-22
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
           M+TA IFLGI+LS LL VNFC+A EE+VAE    +GAAGV AKNGEE+QEEKF FLHHHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYLKKPFLKPI 72
           PY KKPFLKPI
Sbjct: 439 PYYKKPFLKPI 449

[Close]

BLAST of Carg01980 vs. TrEMBL
Match: tr|A0A0A0KWW0|A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus OX=3659 GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHK 60
          MKTA IFLGI+LS LL VNFC+A EE+V E  S +GAAGV AKNGEE ++EKF FL HHK
Sbjct: 1  MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHK 60

Query: 61 PYLKKPFLKPI 72
          PY KKPFLKPI
Sbjct: 61 PYYKKPFLKPI 70

[Close]

BLAST of Carg01980 vs. TrEMBL
Match: tr|A0A0A0KRM7|A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 42/109 (38.53%), Postives = 48/109 (44.04%), Query Frame = 0


Query: 8   LGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNGEEDQEEKFMFLHHHKPYLKKPF 67
           + I LSL L +NFC+A EEN      AQGA     KNGEE +EEKF FL  H P+ KKP 
Sbjct: 1   MAIFLSLFLLLNFCYAAEENEDAFLPAQGAG--ITKNGEEAKEEKFKFLPDHIPFYKKPI 60

Query: 68  LKPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKPLNPPVFATHP 117
            K I                                PKP  PPV  +HP
Sbjct: 61  FKTI----------------------PRQPIIKKPFPKPYRPPVLPSHP 85

The following BLAST results are available for this feature:

BLAST of Carg01980 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34202.1	1.3e-21	76.06	annexin [Cucumis melo subsp. melo]	[more]
XP_008446928.1	1.3e-21	76.06	PREDICTED: proline-rich 33 kDa extensin-related protein-like [Cucumis melo]	[more]
KGN52301.1	2.3e-18	73.24	ATP-dependent RNA helicase DBP7 [Cucumis sativus]	[more]
XP_011655905.1	2.3e-18	73.24	PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus]	[more]
XP_022138883.1	1.3e-08	58.33	uncharacterized protein LOC111009954 [Momordica charantia]	[more]

BLAST of Carg01980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg01980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BG81\|A0A1S3BG81_CUCME	8.6e-22	76.06	proline-rich 33 kDa extensin-related protein-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|E5GCK5\|E5GCK5_CUCME	8.6e-22	76.06	Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A0A0KWW0\|A0A0A0KWW0_CUCSA	1.5e-18	73.24	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus OX=3659 GN=Csa_5G623650 PE=4 ...	[more]
tr\|A0A0A0KRM7\|A0A0A0KRM7_CUCSA	1.3e-06	38.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01980-RA	Carg01980-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01980	Cla009951	Watermelon (97103) v1	carwmB0840
Carg01980	MELO3C012454	Melon (DHL92) v3.5.1	carmeB0834
Carg01980	ClCG05G026650	Watermelon (Charleston Gray)	carwcgB0814
Carg01980	Cucsa.308120	Cucumber (Gy14) v1	carcgyB0969
Carg01980	CmaCh04G013430	Cucurbita maxima (Rimu)	carcmaB1170
Carg01980	CmaCh18G008750	Cucurbita maxima (Rimu)	carcmaB1167
Carg01980	CmoCh18G008800	Cucurbita moschata (Rifu)	carcmoB1135
Carg01980	CmoCh04G014180	Cucurbita moschata (Rifu)	carcmoB1138
Carg01980	Lsi04G000420	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01980	CsGy5G026830	Cucumber (Gy14) v2	carcgybB0831
Carg01980	MELO3C012454.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01980	Cla97C05G108920	Watermelon (97103) v2	carwmbB0876
Carg01980	Cla97C05G102460	Watermelon (97103) v2	carwmbB0878
Carg01980	Bhi07G000763	Wax gourd	carwgoB0979

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01980	Carg20679	Silver-seed gourd	carcarB472

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01980	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01980	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01980	Wild cucumber (PI 183967)	carcpiB0877
Carg01980	Cucumber (Chinese Long) v2	carcuB0857
Carg01980	Cucumber (Chinese Long) v3	carcucB0881