CmaCh18G008750 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G008750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr18 : 7581582 .. 7582590 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATAATGAAACTCATCACAAAGCCTTCTCATTCCAAACCAAATTTCAGTCTCTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTCCTTTTGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCAGCTTGGCCAAGGTATTTCTCTTACTTATTTGCCCTTTTCGTCATTTTTACGTTAACGGTTCGAGCCTCGTGCTAACATCTAACCCAACCGAAGACAAACATCGAGAATCTATTGAAAAGATCTTAAAGACATGAACAATGAAACCCCTAAAGCCACGTGACGTTCCAACCCAGTTCCAATAATGCAGTTTTCGGACGGAGAGTCGTTGCATATTAGAATTCATTAAAGCACGATTCGCATCATTATGTTCGATAAAAGGAACGAGGGAAGCTATGCTTAAAAGACTAAAAACCGTTACTCGTTGCAGGTGGCGGTGGTGGTGGCAGTGGCGGAGCAACCAAAAATGAAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCATTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTCAAGAAGCCATTTAACCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCGCCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCATTGACGTTTGTGTTAAAATATACCCGTAATCTTTTAAAAAGTTGCAAAAATTACCCTAGGAGTAGACAAAAATGATGCTAGTATGTTGAACAAGAAGCGACATGTCTGAATATCGTTCTTCTAGACTTAATCGAATCAAATGTTTTAGTCAATATCATGTCAATTCTTTGTATAACGTTTTAATAAATTTCTACTTCTAAGGATAGTTTTGAAAGATCGAA

mRNA sequence

TATATAATGAAACTCATCACAAAGCCTTCTCATTCCAAACCAAATTTCAGTCTCTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTCCTTTTGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCAGCTTGGCCAAGGTGGCGGTGGTGGTGGCAGTGGCGGAGCAACCAAAAATGAAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCATTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTCAAGAAGCCATTTAACCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCGCCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCATTGACGTTTGTGTTAAAATATACCCGTAATCTTTTAAAAAGTTGCAAAAATTACCCTAGGAGTAGACAAAAATGATGCTAGTATGTTGAACAAGAAGCGACATGTCTGAATATCGTTCTTCTAGACTTAATCGAATCAAATGTTTTAGTCAATATCATGTCAATTCTTTGTATAACGTTTTAATAAATTTCTACTTCTAAGGATAGTTTTGAAAGATCGAA

Coding sequence (CDS)

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTCCTTTTGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCAGCTTGGCCAAGGTGGCGGTGGTGGTGGCAGTGGCGGAGCAACCAAAAATGAAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCATTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTCAAGAAGCCATTTAACCCACCAGTCTTCCACAGCCATCCTTGA

Protein sequence

MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKFLHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP

Homology

[Close]

BLAST of CmaCh18G008750 vs. TrEMBL
Match: E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 70/133 (52.63%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60
           M+ + I L ILLSFLLL+NFC+AA EE+VAE Q G+G     +G   KN EE++EEKFKF
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAA-EESVAEFQPGKGA----AGVTAKNGEEEQEEKFKF 438

Query: 61  LHHHKPFFKKPF-KPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKPF KPIP KHP L                           KKPI VHP  
Sbjct: 439 LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 498

[Close]

BLAST of CmaCh18G008750 vs. TrEMBL
Match: A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-21
Identity = 67/124 (54.03%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60
           MK + I L ILLSFLLL+NFC+AA EE+V E Q G+G     + G T    E+E+EKFKF
Sbjct: 1   MKTACIFLGILLSFLLLVNFCYAA-EESVTEFQSGKG-----AAGVTAKNGEEEDEKFKF 60

Query: 61  LHHHKPFFKKPF-KPIPLKHPILKKPIHVHPILKKPF------------------NPPVF 106
           L HHKP++KKPF KPIP KHP LKKPI VHP  KKP                   +PPVF
Sbjct: 61  LLHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVF 118

[Close]

BLAST of CmaCh18G008750 vs. TrEMBL
Match: A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 53/99 (53.54%), Postives = 60/99 (60.61%), Query Frame = 1


Query: 8   LAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKFLHHHKPF 67
           +AI LS  LLLNFC+AA EEN       QG G       TKN EE +EEKFKFL  H PF
Sbjct: 1   MAIFLSLFLLLNFCYAA-EENEDAFLPAQGAG------ITKNGEEAKEEKFKFLPDHIPF 60

Query: 68  FKKP-FKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           +KKP FK IP + PI+KKP        KP+ PPV  SHP
Sbjct: 61  YKKPIFKTIP-RQPIIKKP------FPKPYRPPVLPSHP 85

[Close]

BLAST of CmaCh18G008750 vs. NCBI nr
Match: gi|659092159|ref|XP_008446928.1| (PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 70/133 (52.63%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60
           M+ + I L ILLSFLLL+NFC+AA EE+VAE Q G+G     +G   KN EE++EEKFKF
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCYAA-EESVAEFQPGKGA----AGVTAKNGEEEQEEKFKF 60

Query: 61  LHHHKPFFKKPF-KPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKPF KPIP KHP L                           KKPI VHP  
Sbjct: 61  LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 120

[Close]

BLAST of CmaCh18G008750 vs. NCBI nr
Match: gi|307136392|gb|ADN34202.1| (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 70/133 (52.63%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60
           M+ + I L ILLSFLLL+NFC+AA EE+VAE Q G+G     +G   KN EE++EEKFKF
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAA-EESVAEFQPGKGA----AGVTAKNGEEEQEEKFKF 438

Query: 61  LHHHKPFFKKPF-KPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKPF KPIP KHP L                           KKPI VHP  
Sbjct: 439 LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 498

[Close]

BLAST of CmaCh18G008750 vs. NCBI nr
Match: gi|778706736|ref|XP_011655905.1| (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-21
Identity = 67/124 (54.03%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60
           MK + I L ILLSFLLL+NFC+AA EE+V E Q G+G     + G T    E+E+EKFKF
Sbjct: 389 MKTACIFLGILLSFLLLVNFCYAA-EESVTEFQSGKG-----AAGVTAKNGEEEDEKFKF 448

Query: 61  LHHHKPFFKKPF-KPIPLKHPILKKPIHVHPILKKPF------------------NPPVF 106
           L HHKP++KKPF KPIP KHP LKKPI VHP  KKP                   +PPVF
Sbjct: 449 LLHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVF 506

[Close]

BLAST of CmaCh18G008750 vs. NCBI nr
Match: gi|700197124|gb|KGN52301.1| (ATP-dependent RNA helicase DBP7 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-21
Identity = 67/124 (54.03%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60
           MK + I L ILLSFLLL+NFC+AA EE+V E Q G+G     + G T    E+E+EKFKF
Sbjct: 1   MKTACIFLGILLSFLLLVNFCYAA-EESVTEFQSGKG-----AAGVTAKNGEEEDEKFKF 60

Query: 61  LHHHKPFFKKPF-KPIPLKHPILKKPIHVHPILKKPF------------------NPPVF 106
           L HHKP++KKPF KPIP KHP LKKPI VHP  KKP                   +PPVF
Sbjct: 61  LLHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVF 118

[Close]

BLAST of CmaCh18G008750 vs. NCBI nr
Match: gi|778706732|ref|XP_011655904.1| (PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 54/101 (53.47%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 6   ILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKFLHHHK 65
           I +AI LS  LLLNFC+AA EEN       QG G       TKN EE +EEKFKFL  H 
Sbjct: 67  ICMAIFLSLFLLLNFCYAA-EENEDAFLPAQGAG------ITKNGEEAKEEKFKFLPDHI 126

Query: 66  PFFKKP-FKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           PF+KKP FK IP + PI+KKP        KP+ PPV  SHP
Sbjct: 127 PFYKKPIFKTIP-RQPIIKKP------FPKPYRPPVLPSHP 153

The following BLAST results are available for this feature:

BLAST of CmaCh18G008750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G008750 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCK5_CUCME	1.4e-22	52.63	Annexin OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KWW0_CUCSA	4.6e-21	54.03	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1	[more]
A0A0A0KRM7_CUCSA	1.7e-10	53.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1	[more]

BLAST of CmaCh18G008750 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh18G008750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092159\|ref\|XP_008446928.1\|	2.1e-22	52.63	PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo]	[more]
gi\|307136392\|gb\|ADN34202.1\|	2.1e-22	52.63	annexin [Cucumis melo subsp. melo]	[more]
gi\|778706736\|ref\|XP_011655905.1\|	6.7e-21	54.03	PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus]	[more]
gi\|700197124\|gb\|KGN52301.1\|	6.7e-21	54.03	ATP-dependent RNA helicase DBP7 [Cucumis sativus]	[more]
gi\|778706732\|ref\|XP_011655904.1\|	2.4e-10	53.47	PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G008750.1	CmaCh18G008750.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G008750	CmoCh18G008800	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G008750	CsaV3_5G036570	Cucumber (Chinese Long) v3	cmacucB0498
CmaCh18G008750	Carg20679	Silver-seed gourd	carcmaB0672
CmaCh18G008750	Carg01980	Silver-seed gourd	carcmaB1167

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G008750	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh18G008750	Cucumber (Gy14) v1	cgycmaB0849
CmaCh18G008750	Cucurbita moschata (Rifu)	cmacmoB420
CmaCh18G008750	Wild cucumber (PI 183967)	cmacpiB423
CmaCh18G008750	Cucumber (Chinese Long) v2	cmacuB417
CmaCh18G008750	Melon (DHL92) v3.5.1	cmameB351
CmaCh18G008750	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G008750	Cucurbita pepo (Zucchini)	cmacpeB429
CmaCh18G008750	Bottle gourd (USVL1VR-Ls)	cmalsiB379
CmaCh18G008750	Cucumber (Gy14) v2	cgybcmaB626
CmaCh18G008750	Melon (DHL92) v3.6.1	cmamedB408
CmaCh18G008750	Wax gourd	cmawgoB0544