Carg20679 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20679
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_107 : 66373 .. 67078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTATTTCTCTTACTTATTTGCCCTTTTCGTCATTTTTACGTCAACGGTTCGAACCTCGTGCTAACATCTAACCCCTAGAGCCACGTGACGTTCCAACCCAGTTCCAATAATGCAGTTTTCGGACTGGGAGTCGTTGCATATTAGAGCATGATTCGCATCATTATGTTCGATAAAAGGAATGAGGGAAGCTATGCTTAAAAGACTAAAAACCCGTTACTCGTTGCAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

mRNA sequence

ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

Coding sequence (CDS)

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGA

Protein sequence

MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKFLHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP

Homology

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: XP_022945572.1 (uncharacterized protein LOC111449767 [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXXPFFK P KPIPLKHPIXXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXPFFKXPFKPIPLKHPIXXXXXXXXXXXXXXXXPPVFHSHP 105

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: XP_023542299.1 (uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 98/106 (92.45%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLG-QXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLG  XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXX PFFK P KPIPLKHP XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXKPFFKXPFKPIPLKHPXXXXXXXXXXXXXXXXXPPVFHSHP 106

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: XP_023542298.1 (E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 98/108 (90.74%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLG---QXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLG    XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXXXX PFFK P KPIPLKHP XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXXXKPFFKXPFKPIPLKHPXXXXXXXXXXXXXXXXXPPVFHSHP 108

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: XP_022966850.1 (uncharacterized protein LOC111466433 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-12
Identity = 93/105 (88.57%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLS L+LLNFCHAAAEENVAEL    XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXX PFFK P KPIPLKH  XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXKPFFKXPFKPIPLKHXXXXXXXXXXXXXXXXXXPPVFHSHP 105

The following BLAST results are available for this feature:

BLAST of Carg20679 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945572.1	2.3e-17	97.14	uncharacterized protein LOC111449767 [Cucurbita moschata]	[more]
XP_023542299.1	1.5e-13	92.45	uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023542298.1	2.6e-13	90.74	E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022966850.1	4.9e-12	88.57	uncharacterized protein LOC111466433 [Cucurbita maxima]	[more]

BLAST of Carg20679 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20679 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20679 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20679-RA	Carg20679-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..54

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20679	Csa5G623650	Cucumber (Chinese Long) v2	carcuB0515
Carg20679	MELO3C012454	Melon (DHL92) v3.5.1	carmeB0489
Carg20679	CSPI05G27440	Wild cucumber (PI 183967)	carcpiB0522
Carg20679	Cucsa.308120	Cucumber (Gy14) v1	carcgyB0556
Carg20679	CmaCh18G008750	Cucurbita maxima (Rimu)	carcmaB0672
Carg20679	CmaCh04G013430	Cucurbita maxima (Rimu)	carcmaB0673
Carg20679	CmoCh18G008800	Cucurbita moschata (Rifu)	carcmoB0654
Carg20679	CmoCh04G014180	Cucurbita moschata (Rifu)	carcmoB0655
Carg20679	Lsi04G000420	Bottle gourd (USVL1VR-Ls)	carlsiB437
Carg20679	CsGy5G026830	Cucumber (Gy14) v2	carcgybB0492
Carg20679	MELO3C012454.2	Melon (DHL92) v3.6.1	carmedB0495
Carg20679	CsaV3_5G036580	Cucumber (Chinese Long) v3	carcucB0521

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20679	Carg01980	Silver-seed gourd	carcarB472

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20679	Wax gourd	carwgoB0588
Carg20679	Cucurbita pepo (Zucchini)	carcpeB0677
Carg20679	Cucurbita pepo (Zucchini)	carcpeB0678