Carg20679-RA (mRNA) Silver-seed gourd

NameCarg20679-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_107 : 66373 .. 67078 (+)
Sequence length480
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTATTTCTCTTACTTATTTGCCCTTTTCGTCATTTTTACGTCAACGGTTCGAACCTCGTGCTAACATCTAACCCCTAGAGCCACGTGACGTTCCAACCCAGTTCCAATAATGCAGTTTTCGGACTGGGAGTCGTTGCATATTAGAGCATGATTCGCATCATTATGTTCGATAAAAGGAATGAGGGAAGCTATGCTTAAAAGACTAAAAACCCGTTACTCGTTGCAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

mRNA sequence

ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

Coding sequence (CDS)

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGA

Protein sequence

MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKFLHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
BLAST of Carg20679-RA vs. NCBI nr
Match: XP_022945572.1 (uncharacterized protein LOC111449767 [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXXPFFK P KPIPLKHPIXXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXPFFKXPFKPIPLKHPIXXXXXXXXXXXXXXXXPPVFHSHP 105

BLAST of Carg20679-RA vs. NCBI nr
Match: XP_023542299.1 (uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 98/106 (92.45%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLG-QXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLG  XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXX PFFK P KPIPLKHP XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXKPFFKXPFKPIPLKHPXXXXXXXXXXXXXXXXXPPVFHSHP 106

BLAST of Carg20679-RA vs. NCBI nr
Match: XP_023542298.1 (E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 98/108 (90.74%), Postives = 98/108 (90.74%), Query Frame = 0

Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLG---QXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLG    XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXXXX PFFK P KPIPLKHP XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXXXKPFFKXPFKPIPLKHPXXXXXXXXXXXXXXXXXPPVFHSHP 108

BLAST of Carg20679-RA vs. NCBI nr
Match: XP_022966850.1 (uncharacterized protein LOC111466433 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-12
Identity = 93/105 (88.57%), Postives = 94/105 (89.52%), Query Frame = 0

Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLS L+LLNFCHAAAEENVAEL    XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXX PFFK P KPIPLKH  XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXKPFFKXPFKPIPLKHXXXXXXXXXXXXXXXXXXPPVFHSHP 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022945572.12.3e-1797.14uncharacterized protein LOC111449767 [Cucurbita moschata][more]
XP_023542299.11.5e-1392.45uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023542298.12.6e-1390.74E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022966850.14.9e-1288.57uncharacterized protein LOC111466433 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg20679Carg20679gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg20679-RACarg20679-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20679-RA.exon.1Carg20679-RA.exon.1exon
Carg20679-RA.exon.2Carg20679-RA.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20679-RA.five_prime_UTR.1Carg20679-RA.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20679-RA.CDS.1Carg20679-RA.CDS.1CDS
Carg20679-RA.CDS.2Carg20679-RA.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20679-RA.three_prime_UTR.1Carg20679-RA.three_prime_UTR.1three_prime_UTR


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..54