Carg20679-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20679-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_107 : 66373 .. 67078 (+)
Sequence length	480

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTATTTCTCTTACTTATTTGCCCTTTTCGTCATTTTTACGTCAACGGTTCGAACCTCGTGCTAACATCTAACCCCTAGAGCCACGTGACGTTCCAACCCAGTTCCAATAATGCAGTTTTCGGACTGGGAGTCGTTGCATATTAGAGCATGATTCGCATCATTATGTTCGATAAAAGGAATGAGGGAAGCTATGCTTAAAAGACTAAAAACCCGTTACTCGTTGCAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

mRNA sequence

ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

Coding sequence (CDS)

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGA

Protein sequence

MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKFLHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP

Homology

[Close]

BLAST of Carg20679-RA vs. NCBI nr
Match: XP_022945572.1 (uncharacterized protein LOC111449767 [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXXPFFK P KPIPLKHPIXXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXPFFKXPFKPIPLKHPIXXXXXXXXXXXXXXXXPPVFHSHP 105

[Close]

BLAST of Carg20679-RA vs. NCBI nr
Match: XP_023542299.1 (uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 98/106 (92.45%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLG-QXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLG  XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXX PFFK P KPIPLKHP XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXKPFFKXPFKPIPLKHPXXXXXXXXXXXXXXXXXPPVFHSHP 106

[Close]

BLAST of Carg20679-RA vs. NCBI nr
Match: XP_023542298.1 (E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 98/108 (90.74%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLG---QXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLG    XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXXXXX PFFK P KPIPLKHP XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXXXXKPFFKXPFKPIPLKHPXXXXXXXXXXXXXXXXXPPVFHSHP 108

[Close]

BLAST of Carg20679-RA vs. NCBI nr
Match: XP_022966850.1 (uncharacterized protein LOC111466433 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-12
Identity = 93/105 (88.57%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKASFILLAILLS L+LLNFCHAAAEENVAEL    XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPFFKKPLKPIPLKHPIXXXXXXXXXXXXXXXNPPVFHSHP 106
           XXXX PFFK P KPIPLKH  XXXXXXXXXXXXXXX PPVFHSHP
Sbjct: 61  XXXXKPFFKXPFKPIPLKHXXXXXXXXXXXXXXXXXXPPVFHSHP 105

The following BLAST results are available for this feature:

BLAST of Carg20679-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945572.1	2.3e-17	97.14	uncharacterized protein LOC111449767 [Cucurbita moschata]	[more]
XP_023542299.1	1.5e-13	92.45	uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023542298.1	2.6e-13	90.74	E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022966850.1	4.9e-12	88.57	uncharacterized protein LOC111466433 [Cucurbita maxima]	[more]

BLAST of Carg20679-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20679-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20679-RA vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20679	Carg20679	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20679-RA	Carg20679-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20679-RA.exon.1	Carg20679-RA.exon.1	exon
Carg20679-RA.exon.2	Carg20679-RA.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20679-RA.five_prime_UTR.1	Carg20679-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20679-RA.CDS.1	Carg20679-RA.CDS.1	CDS
Carg20679-RA.CDS.2	Carg20679-RA.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20679-RA.three_prime_UTR.1	Carg20679-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..54