Csa5G623650 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G623650
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRepetitive proline-rich cell wall protein
LocationChr5 : 24926693 .. 24928245 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAACAAACTCATCACAAAGCCTAAAGCGGCCTTCTCAACCAAACTAAATTTAGTTTGAAGCAAACTTTGGTTGTGGCTTTCACCTCTCTGCTTTGCAATGAAAACTGCTTGCATTTTTCTAGGCATTTTGCTGTCTTTTCTTTTGCTTGTAAACTTCTGCTATGCAGCAGAAGAAAGTGTTACTGAATTTCAGTCTGGAAAAGGTAATTTATTATTATTATTTTTTGGCATTTTCAGGTTCTTTAATGAAAAATGGTTCTCTGCACACATCTTATATATATATATATGTCCTTTGCATGGGTGCTTAGATATTCCAGCACTAAGGAGAGATTTGGAACTCAAATAACTAAATTAGTTGAAATATGTTTTGGTTGACCATATATCATATATTAAGGTTTTATGATCATTTGCCTCGTGCTAATATATATATATATAGACAAGATCACCTCATGCAATGCAATATTTAGATTCTCATTAAGAGGATGGTTAGAGAATGTGTTCTAATTTCATCTATGGGTTTATGAGGGTAAGATCTTGACTATTAATATAAACTTAAAAAAAAGTAACATTTTATGGAAGTCACATACTTAAATCGCTATTTCTTTTGAAATTATAACTCACTATGTGTTTGAAGCTTCAATTATAATAGTTGATGTTTTCAACTATTGCAATCTACAACTTTGTTTTAGTATTTACTATCTCTTACTTTGATTAAAATAGTCTGCACCCTAAACACAAAATATTATAATTCTTATTAAAATGGTAATTATATTCTAAACAATGTGTTATTAATAATCATTTATGATATTATGTAAAATTGTGACAAAGTCAAATAAATAATTAGAACTTTTTGAGTTTGTTCTCATAGCAAAGTTATAGTGTAATGTAAAGCATTTTGTTTGTACAGGTGCAGCTGGTGTAACAGCTAAGAATGGAGAAGAGGAAGATGAGAAATTCAAGTTTCTTCTTCACCACAAACCATACTACAAGAAACCATTTCTAAAGCCAATTCCATACAAACATCCATTTCTCAAGAAGCCCATCCCAGTTCACCCATTCCACAAAAAGCCAATTGTATTCGAGAAGAAGCCACTTCCAGTTCATCCATTCTTCAAGAAGCCAATTGATCACCCACCAGTCTTCCACACCCATCCTTGAAAAATCCCTTCTTCTTCCACTTTACCTTGTCTTTGACATAATTATGAAGTGAGTTTAATTATATTTAAAAATTAAAAAATAAAAAAAGAAGCCGTCAGTTATTCTATTATTACTGTACTTTGTGTTGAGTGTATTATTAGATGAAGTTGTTTTCAAATAAAGCTTTGTATTGTATCTGTGTTGTTTCTGTTTAAACTGTCCATTGTAAGTTTCATCTATGAAGTGCTTTTGTTGGTTTGGATGCCATGAGTGAATATGGACATGATAAAATAAACCAAAAATCAAGAAAAATATAAGTTTATGTTGAGTGATGTTATGGTTGAACTAAAATTGGACAATTGAAACTACAAAGATGGAATAACAATGGACAGATTGATGTCAATTCGATCGGG

mRNA sequence

ATGAAAACTGCTTGCATTTTTCTAGGCATTTTGCTGTCTTTTCTTTTGCTTGTAAACTTCTGCTATGCAGCAGAAGAAAGTGTTACTGAATTTCAGTCTGGAAAAGGTGCAGCTGGTGTAACAGCTAAGAATGGAGAAGAGGAAGATGAGAAATTCAAGTTTCTTCTTCACCACAAACCATACTACAAGAAACCATTTCTAAAGCCAATTCCATACAAACATCCATTTCTCAAGAAGCCCATCCCAGTTCACCCATTCCACAAAAAGCCAATTGTATTCGAGAAGAAGCCACTTCCAGTTCATCCATTCTTCAAGAAGCCAATTGATCACCCACCAGTCTTCCACACCCATCCTTGA

Coding sequence (CDS)

ATGAAAACTGCTTGCATTTTTCTAGGCATTTTGCTGTCTTTTCTTTTGCTTGTAAACTTCTGCTATGCAGCAGAAGAAAGTGTTACTGAATTTCAGTCTGGAAAAGGTGCAGCTGGTGTAACAGCTAAGAATGGAGAAGAGGAAGATGAGAAATTCAAGTTTCTTCTTCACCACAAACCATACTACAAGAAACCATTTCTAAAGCCAATTCCATACAAACATCCATTTCTCAAGAAGCCCATCCCAGTTCACCCATTCCACAAAAAGCCAATTGTATTCGAGAAGAAGCCACTTCCAGTTCATCCATTCTTCAAGAAGCCAATTGATCACCCACCAGTCTTCCACACCCATCCTTGA

Protein sequence

MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP*
Homology
[Close]
BLAST of Csa5G623650 vs. TrEMBL
Match: A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.6e-65
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP 60
           MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP
Sbjct: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP 60

Query: 61  YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 119
           YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP
Sbjct: 61  YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 118

[Close]
BLAST of Csa5G623650 vs. TrEMBL
Match: E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.7e-54
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 1 

Query: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEE-DEKFKFLLHHK 60
           M+TA IFLGILLSFLLLVNFCYAAEESV EFQ GKGAAGVTAKNGEEE +EKFKFL HHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYYKKPFLKPIPYKHPFLKKPIPVHPFH----------KKPIVFEKKPLPVHPFFKKPID 119
           PYYKKPFLKPIPYKHPFLKKPIPVHPFH          KKPI F+KKP+PVHPFFKKPI 
Sbjct: 439 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI- 498

[Close]
BLAST of Csa5G623650 vs. TrEMBL
Match: A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 1 

Query: 8   LGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHKPYYKKPF 67
           + I LS  LL+NFCYAAEE+   F   +GA G+T KNGEE ++EKFKFL  H P+YKKP 
Sbjct: 1   MAIFLSLFLLLNFCYAAEENEDAFLPAQGA-GIT-KNGEEAKEEKFKFLPDHIPFYKKPI 60

Query: 68  LKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHP 103
            K IP + P +KKP P      KP  +    LP HP
Sbjct: 61  FKTIP-RQPIIKKPFP------KP--YRPPVLPSHP 85

[Close]
BLAST of Csa5G623650 vs. TrEMBL
Match: A0A0S3S8U5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G014100 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-11
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 1 

Query: 8   LGILLSFLLLVNFCYAAEESVTEFQSGKGA----------AGVTAKNGEEEDEKFKFLLH 67
           L  +L F L++ FCYA   + T   SG                T  N   E+EKF F  H
Sbjct: 7   LNAILRFGLVITFCYAVAAAATTEVSGTEVNTNGKLESEELTKTTLNENYEEEKF-FFHH 66

Query: 68  HKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPI---VFEKKPLPVHPFFKKPIDHPPVF 119
           HKP +KKPF KP+P   PF+ KPIPV+  + KP+   V++ KP+PV P FK      PV+
Sbjct: 67  HKPLFKKPFFKPVPKPIPFV-KPIPVYKPYPKPVPVPVYKPKPVPV-PVFKPHPKPVPVY 126

[Close]
BLAST of Csa5G623650 vs. TrEMBL
Match: A0A0L9V2T3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g008300 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-11
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 1 

Query: 8   LGILLSFLLLVNFCYAAEESVTEFQSGKGA----------AGVTAKNGEEEDEKFKFLLH 67
           L  +L F L++ FCYA   + T   SG                T  N   E+EKF F  H
Sbjct: 7   LNAILRFGLVITFCYAVAAAATTEVSGTEVNTNGKLESEELTKTTLNENYEEEKF-FFHH 66

Query: 68  HKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPI---VFEKKPLPVHPFFKKPIDHPPVF 119
           HKP +KKPF KP+P   PF+ KPIPV+  + KP+   V++ KP+PV P FK      PV+
Sbjct: 67  HKPLFKKPFFKPVPKPIPFV-KPIPVYKPYPKPVPVPVYKPKPVPV-PVFKPHPKPVPVY 126

[Close]
BLAST of Csa5G623650 vs. NCBI nr
Match: gi|700197124|gb|KGN52301.1| (ATP-dependent RNA helicase DBP7 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-65
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP 60
           MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP
Sbjct: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP 60

Query: 61  YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 119
           YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP
Sbjct: 61  YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 118

[Close]
BLAST of Csa5G623650 vs. NCBI nr
Match: gi|778706736|ref|XP_011655905.1| (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-65
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP 60
           MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP
Sbjct: 389 MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKP 448

Query: 61  YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 119
           YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP
Sbjct: 449 YYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 506

[Close]
BLAST of Csa5G623650 vs. NCBI nr
Match: gi|307136392|gb|ADN34202.1| (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 218.4 bits (555), Expect = 6.8e-54
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 1 

Query: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEE-DEKFKFLLHHK 60
           M+TA IFLGILLSFLLLVNFCYAAEESV EFQ GKGAAGVTAKNGEEE +EKFKFL HHK
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PYYKKPFLKPIPYKHPFLKKPIPVHPFH----------KKPIVFEKKPLPVHPFFKKPID 119
           PYYKKPFLKPIPYKHPFLKKPIPVHPFH          KKPI F+KKP+PVHPFFKKPI 
Sbjct: 439 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI- 498

[Close]
BLAST of Csa5G623650 vs. NCBI nr
Match: gi|659092159|ref|XP_008446928.1| (PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 6.8e-54
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 1 

Query: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEE-DEKFKFLLHHK 60
           M+TA IFLGILLSFLLLVNFCYAAEESV EFQ GKGAAGVTAKNGEEE +EKFKFL HHK
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61  PYYKKPFLKPIPYKHPFLKKPIPVHPFH----------KKPIVFEKKPLPVHPFFKKPID 119
           PYYKKPFLKPIPYKHPFLKKPIPVHPFH          KKPI F+KKP+PVHPFFKKPI 
Sbjct: 61  PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI- 120

[Close]
BLAST of Csa5G623650 vs. NCBI nr
Match: gi|778706732|ref|XP_011655904.1| (PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 3   TACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHKPY 62
           T  I + I LS  LL+NFCYAAEE+   F   +GA G+T KNGEE ++EKFKFL  H P+
Sbjct: 64  TISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGA-GIT-KNGEEAKEEKFKFLPDHIPF 123

Query: 63  YKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHP 103
           YKKP  K IP + P +KKP P      KP  +    LP HP
Sbjct: 124 YKKPIFKTIP-RQPIIKKPFP------KP--YRPPVLPSHP 153

The following BLAST results are available for this feature:
BLAST of Csa5G623650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWW0_CUCSA1.6e-65100.00ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1[more]
E5GCK5_CUCME4.7e-5483.72Annexin OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A0A0KRM7_CUCSA1.5e-1251.04Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1[more]
A0A0S3S8U5_PHAAN8.4e-1139.52Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G014100 PE=... [more]
A0A0L9V2T3_PHAAN8.4e-1139.52Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g008300 PE=4 SV=1[more]
BLAST of Csa5G623650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197124|gb|KGN52301.1|2.2e-65100.00ATP-dependent RNA helicase DBP7 [Cucumis sativus][more]
gi|778706736|ref|XP_011655905.1|2.2e-65100.00PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus][more]
gi|307136392|gb|ADN34202.1|6.8e-5483.72annexin [Cucumis melo subsp. melo][more]
gi|659092159|ref|XP_008446928.1|6.8e-5483.72PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo][more]
gi|778706732|ref|XP_011655904.1|5.8e-1350.50PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005544 calcium-dependent phospholipid binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU087466cucumber EST collection version 3.0transcribed_cluster
CU097003cucumber EST collection version 3.0transcribed_cluster
CU103235cucumber EST collection version 3.0transcribed_cluster
CU121018cucumber EST collection version 3.0transcribed_cluster
CU122624cucumber EST collection version 3.0transcribed_cluster
CU124912cucumber EST collection version 3.0transcribed_cluster
CU128937cucumber EST collection version 3.0transcribed_cluster
CU130797cucumber EST collection version 3.0transcribed_cluster
CU131677cucumber EST collection version 3.0transcribed_cluster
CU148178cucumber EST collection version 3.0transcribed_cluster
CU164788cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G623650.1Csa5G623650.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103235CU103235transcribed_cluster
CU087466CU087466transcribed_cluster
CU124912CU124912transcribed_cluster
CU130797CU130797transcribed_cluster
CU097003CU097003transcribed_cluster
CU164788CU164788transcribed_cluster
CU131677CU131677transcribed_cluster
CU121018CU121018transcribed_cluster
CU128937CU128937transcribed_cluster
CU148178CU148178transcribed_cluster
CU122624CU122624transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G623650Lsi04G000420Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G623650Carg20679Silver-seed gourdcarcuB0515
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G623650Melon (DHL92) v3.5.1cumeB377
Csa5G623650Watermelon (Charleston Gray)cuwcgB390
Csa5G623650Watermelon (97103) v1cuwmB396
Csa5G623650Cucurbita pepo (Zucchini)cpecuB041
Csa5G623650Cucurbita pepo (Zucchini)cpecuB439
Csa5G623650Cucumber (Gy14) v2cgybcuB223
Csa5G623650Melon (DHL92) v3.6.1cumedB359
Csa5G623650Silver-seed gourdcarcuB0857
Csa5G623650Watermelon (97103) v2cuwmbB379
Csa5G623650Wax gourdcuwgoB501
Csa5G623650Cucumber (Gy14) v1cgycuB441
Csa5G623650Cucurbita maxima (Rimu)cmacuB417
Csa5G623650Cucurbita maxima (Rimu)cmacuB748
Csa5G623650Cucurbita moschata (Rifu)cmocuB406
Csa5G623650Cucurbita moschata (Rifu)cmocuB738