CSPI05G27430 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G27430
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Annexin
Location	Chr5 : 25939874 .. 25940924 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATCATGAATAATTTTAGCTACCTGTCTAGCACTCAAATTCACACCCTCCAAAGTAGCTATCAAAGTAAACACTTTGTGTCCATTCGTAGCCACACTATAAAATGGGACAATAAGCCTTCTGAACCAATAAGCACTTCCAATTCAGAATTTGGCTCTCCCATCTTTTACCTCTCTACTTTTGGAATGAAGACTACTATTTCCATTTGTATGGCCATCTTTCTCTCCTTGTTTTTGCTTCTCAACTTCTGTTATGCAGCAGAAGAAAATGAAGATGCCTTTCTGCCTGCTCAAGGTATCTTCACTCGTTCCTTTTCTTCTTTTTTGGGTCATTTTCAACATGTGGGAGTTAAGTTACGCTTGTTTTGCACGACCTCTTTTGAAGGACATCGCAGTTTTGTTCTGTCATACTACACCTGTTAATTTGTACATAAAATTCTAATACAAGAGGTAAGAAAACAGTATGTAAGAGCATTTCCATATTTTCATTATGCAGGAGCTGGTATCACCAAAAATGGAGAAGAAGCCAAAGAAGAGAAATTCAAGTTTCTTCCTGACCACATACCATTCTACAAGAAGCCCATTTTCAAGACAATTCCTCGTCAACCAATCATCAAGAAGCCATTTCCTAAACCATATCGTCCACCAGTGCTCCCCAGCCATCCTTGAAAGTATGCTCAATCTTATAATGAAATGGAATAAAAACACATGTAGTAACCTTAAGCTTTATCGTAGTTTCATTTTAGAAGTTTATAAATGATCAGAAGGCTTCAAGCTGAGAGTCAAGAAGATCTATGAAGAAAACAATAATTTGTTTAGGGGGAAAATAAAAGAGAGAGTGAGCTCTCTATACTACTGTTATGTTCAAGGTGACGTGGTTGATCATGCAATGTAGGAATAGAACAAACTATGTTGAGTCCAGTGTGTATTTTGGTCCAAAATATATTCACATTACCTTCACTACAGATCCTGCGCATCTCCAATTTACACTTGCTTATGACAGCTTTTACTTGCCCCTTGTAACTGGAATTTAATCACAATTTGGGAGCCA

mRNA sequence

ATGAATAATTTTAGCTACCTGTCTAGCACTCAAATTCACACCCTCCAAAGTAGCTATCAAAGTAAACACTTTGTGTCCATTCGTAGCCACACTATAAAATGGGACAATAAGCCTTCTGAACCAATAAGCACTTCCAATTCAGAATTTGGCTCTCCCATCTTTTACCTCTCTACTTTTGGAATGAAGACTACTATTTCCATTTGTATGGCCATCTTTCTCTCCTTGTTTTTGCTTCTCAACTTCTGTTATGCAGCAGAAGAAAATGAAGATGCCTTTCTGCCTGCTCAAGGAGCTGGTATCACCAAAAATGGAGAAGAAGCCAAAGAAGAGAAATTCAAGTTTCTTCCTGACCACATACCATTCTACAAGAAGCCCATTTTCAAGACAATTCCTCGTCAACCAATCATCAAGAAGCCATTTCCTAAACCATATCGTCCACCAGTGCTCCCCAGCCATCCTTGA

Coding sequence (CDS)

ATGAATAATTTTAGCTACCTGTCTAGCACTCAAATTCACACCCTCCAAAGTAGCTATCAAAGTAAACACTTTGTGTCCATTCGTAGCCACACTATAAAATGGGACAATAAGCCTTCTGAACCAATAAGCACTTCCAATTCAGAATTTGGCTCTCCCATCTTTTACCTCTCTACTTTTGGAATGAAGACTACTATTTCCATTTGTATGGCCATCTTTCTCTCCTTGTTTTTGCTTCTCAACTTCTGTTATGCAGCAGAAGAAAATGAAGATGCCTTTCTGCCTGCTCAAGGAGCTGGTATCACCAAAAATGGAGAAGAAGCCAAAGAAGAGAAATTCAAGTTTCTTCCTGACCACATACCATTCTACAAGAAGCCCATTTTCAAGACAATTCCTCGTCAACCAATCATCAAGAAGCCATTTCCTAAACCATATCGTCCACCAGTGCTCCCCAGCCATCCTTGA

Homology

[Close]

BLAST of CSPI05G27430 vs. TrEMBL
Match: A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 69  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 128
           MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK
Sbjct: 1   MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 60

Query: 129 TIPRQPIIKKPFPKPYRPPVLPSHP 154
           TIPRQPIIKKPFPKPYRPPVLPSHP
Sbjct: 61  TIPRQPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of CSPI05G27430 vs. TrEMBL
Match: E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.5e-15
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1


Query: 59  FGMKTTISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGA-GIT-KNGEEAKEEKFKFLP 118
           F M+T   I + I LS  LL+NFCYAAEE+   F P +GA G+T KNGEE +EEKFKFL 
Sbjct: 377 FAMRTA-GIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLH 436

Query: 119 DHIPFYKKPIFKTIP-RQPIIKKPFP-KPYRPPVLPSHP 154
            H P+YKKP  K IP + P +KKP P  P+    +P HP
Sbjct: 437 HHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 474

[Close]

BLAST of CSPI05G27430 vs. TrEMBL
Match: A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 64  TISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGA-GIT-KNGEEAKEEKFKFLPDHIPF 123
           T  I + I LS  LL+NFCYAAEE+   F   +GA G+T KNGEE ++EKFKFL  H P+
Sbjct: 3   TACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHKPY 62

Query: 124 YKKPIFKTIP-RQPIIKKPFP------KP--YRPPVLPSHP 154
           YKKP  K IP + P +KKP P      KP  +    LP HP
Sbjct: 63  YKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHP 102

[Close]

BLAST of CSPI05G27430 vs. NCBI nr
Match: gi|778706732|ref|XP_011655904.1| (PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 9.3e-80
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MNNFSYLSSTQIHTLQSSYQSKHFVSIRSHTIKWDNKPSEPISTSNSEFGSPIFYLSTFG 60
           MNNFSYLSSTQIHTLQSSYQSKHFVSI SHTIKWDNKPSEPISTSNSEFGSPIFYLSTFG
Sbjct: 1   MNNFSYLSSTQIHTLQSSYQSKHFVSIHSHTIKWDNKPSEPISTSNSEFGSPIFYLSTFG 60

Query: 61  MKTTISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIP 120
           MKTTISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIP
Sbjct: 61  MKTTISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIP 120

Query: 121 FYKKPIFKTIPRQPIIKKPFPKPYRPPVLPSHP 154
           FYKKPIFKTIPRQPIIKKPFPKPYRPPVLPSHP
Sbjct: 121 FYKKPIFKTIPRQPIIKKPFPKPYRPPVLPSHP 153

[Close]

BLAST of CSPI05G27430 vs. NCBI nr
Match: gi|700197123|gb|KGN52300.1| (hypothetical protein Csa_5G623640 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.9e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 69  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 128
           MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK
Sbjct: 1   MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 60

Query: 129 TIPRQPIIKKPFPKPYRPPVLPSHP 154
           TIPRQPIIKKPFPKPYRPPVLPSHP
Sbjct: 61  TIPRQPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of CSPI05G27430 vs. NCBI nr
Match: gi|307136392|gb|ADN34202.1| (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1


Query: 59  FGMKTTISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGA-GIT-KNGEEAKEEKFKFLP 118
           F M+T   I + I LS  LL+NFCYAAEE+   F P +GA G+T KNGEE +EEKFKFL 
Sbjct: 377 FAMRTA-GIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLH 436

Query: 119 DHIPFYKKPIFKTIP-RQPIIKKPFP-KPYRPPVLPSHP 154
            H P+YKKP  K IP + P +KKP P  P+    +P HP
Sbjct: 437 HHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 474

[Close]

BLAST of CSPI05G27430 vs. NCBI nr
Match: gi|659092159|ref|XP_008446928.1| (PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 1


Query: 64  TISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGA-GIT-KNGEEAKEEKFKFLPDHIPF 123
           T  I + I LS  LL+NFCYAAEE+   F P +GA G+T KNGEE +EEKFKFL  H P+
Sbjct: 3   TAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHKPY 62

Query: 124 YKKPIFKTIP-RQPIIKKPFP-KPYRPPVLPSHP 154
           YKKP  K IP + P +KKP P  P+    +P HP
Sbjct: 63  YKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 96

[Close]

BLAST of CSPI05G27430 vs. NCBI nr
Match: gi|778706736|ref|XP_011655905.1| (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 61/131 (46.56%), Postives = 76/131 (58.02%), Query Frame = 1


Query: 37  KPSEPISTSNSEFGSPIF-YLST--FGMKTTISICMAIFLSLFLLLNFCYAAEENEDAFL 96
           KP    ST  +   S ++ +LS   F MKT   I + I LS  LL+NFCYAAEE+   F 
Sbjct: 362 KPKAAFSTKLNLVXSKLWLWLSPLCFAMKTAC-IFLGILLSFLLLVNFCYAAEESVTEFQ 421

Query: 97  PAQGA-GIT-KNGEEAKEEKFKFLPDHIPFYKKPIFKTIP-RQPIIKKPFP------KP- 154
             +GA G+T KNGEE ++EKFKFL  H P+YKKP  K IP + P +KKP P      KP 
Sbjct: 422 SGKGAAGVTAKNGEE-EDEKFKFLLHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPI 481

The following BLAST results are available for this feature:

BLAST of CSPI05G27430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G27430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRM7_CUCSA	1.3e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1	[more]
E5GCK5_CUCME	9.5e-15	53.54	Annexin OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KWW0_CUCSA	1.4e-10	50.50	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1	[more]

BLAST of CSPI05G27430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G27430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706732\|ref\|XP_011655904.1\|	9.3e-80	99.35	PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus]	[more]
gi\|700197123\|gb\|KGN52300.1\|	1.9e-40	100.00	hypothetical protein Csa_5G623640 [Cucumis sativus]	[more]
gi\|307136392\|gb\|ADN34202.1\|	1.4e-14	53.54	annexin [Cucumis melo subsp. melo]	[more]
gi\|659092159\|ref\|XP_008446928.1\|	2.3e-14	54.26	PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo]	[more]
gi\|778706736\|ref\|XP_011655905.1\|	5.4e-11	46.56	PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005544	calcium-dependent phospholipid binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G27430.1	CSPI05G27430.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G27430	Cla020590	Watermelon (97103) v1	cpiwmB410
CSPI05G27430	Cla009951	Watermelon (97103) v1	cpiwmB404
CSPI05G27430	Csa5G623640	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G27430	MELO3C012454	Melon (DHL92) v3.5.1	cpimeB369
CSPI05G27430	ClCG05G026650	Watermelon (Charleston Gray)	cpiwcgB408
CSPI05G27430	ClCG05G020720	Watermelon (Charleston Gray)	cpiwcgB412
CSPI05G27430	Lsi04G000440	Bottle gourd (USVL1VR-Ls)	cpilsiB372
CSPI05G27430	MELO3C012454.2	Melon (DHL92) v3.6.1	cpimedB363
CSPI05G27430	CsaV3_5G036570	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G27430	Cla97C05G102460	Watermelon (97103) v2	cpiwmbB402
CSPI05G27430	Cla97C05G108920	Watermelon (97103) v2	cpiwmbB397
CSPI05G27430	Bhi07G000763	Wax gourd	cpiwgoB506
CSPI05G27430	Cucsa.308120	Cucumber (Gy14) v1	cgycpiB464
CSPI05G27430	CmaCh04G013430	Cucurbita maxima (Rimu)	cmacpiB755
CSPI05G27430	CmoCh04G014180	Cucurbita moschata (Rifu)	cmocpiB745
CSPI05G27430	Cp4.1LG01g15110	Cucurbita pepo (Zucchini)	cpecpiB439
CSPI05G27430	CsGy5G026830	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G27430	Carg01979	Silver-seed gourd	carcpiB0877

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G27430	Silver-seed gourd	carcpiB0522
CSPI05G27430	Cucurbita maxima (Rimu)	cmacpiB423
CSPI05G27430	Cucurbita moschata (Rifu)	cmocpiB411
CSPI05G27430	Cucurbita pepo (Zucchini)	cpecpiB036