CmaCh11G017070 (gene) Cucurbita maxima (Rimu)

NameCmaCh11G017070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGenomic DNA, chromosome 3, BAC clone: T31J18
LocationCma_Chr11 : 11306924 .. 11309135 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGGAAAATTACTTCTTCCAAACCTGCTTGGCTGAGATTGTATGGCAAGGACTTCTGTGCAGGCGAATGCATTGCTTTTTAGGTAATAATCATCTTGTTTTTGTTATGCTTTTGTTTCTTTCTTTTGTTCTTTTAACGGGGTCGGAGTCATGCATGAACCTGCCCTAGAAATGACGAGGGAGAAAGGAGAGGTTTCTCCCCGTTATCTATGTTGGATGATGAAAGTTCCACATCGGCTAATTTAGGAAATGATCATGAGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGAAGCCCAAAGCAAAGCCATGAGAACCACACTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAAGAATCTAAACAGGTCGATAGATAGTAATTACATTCCTCGTTCCGTCATGACCTAGTCTTTGCCTCACTCCACTTTTATATAAAAATAAAAGTATATTATTGTAACAGTCTAAGCCCATTGCTAGCAGTTATAGTCCGGTTTGACCCGTTACGTATTGTCATCCCTCACGATTTTAAAACGCGTATACTAAGGAGAGGTTTCCACACTCTAATAAGAGTGTTTCATTTCCTACTCCAGCCGGTGTGAGATCTCACAATCGCGTATACTAAGGAGAGGTTTCCACACTCTAATAAGAGTGTTTCATTTCCTACTCCAGCCGGTGTGAGATCTCACAATCCACTCCATTTCCACACTCTAATAAGAGTGTTTCATTTCCTACTCCAACCGGTGTGAGATGTCACAATCCACCCCCCTTGGAGTCCCAGCGTCCTTGCTGGCACATAGCTTGGTGTTTGGCACCCACTACTAGCAAATATTATCTGGTTTGACTCGTTACGTATCATCATTAGCCTCACGGTTTTAAAACGCGTCTATTAGGGAGAAGTTTTCACACTCTTATAATATATTTCGTTTTCTACTCCAAGCCATATGAGATCTCACAATCCACCCCCCTTGAAGTCTCAACGTCCTTGCTAGCTCACCGCTTGGTGTCTAGCACCCACTGCTAGCGAATATTATCTGCTTTGACCCGTTACGTATCATCGTTAACCTCACGGTTTTAAAATGCGTTTACTAGGGAGAGGTTTCCACACTCTTATAAGAATGTTTCGTTCCCCACTCCAACCGATGTGAGATCTCACAATCCCCACCCTCTTTAGGATCCTAACGTCCTCATTGGCACACCACTCAGTGTCTGGCACCCACCGCTAACAAATATTGTCCGCTTTAACCTATTATGTATCACCGTCAACCTCACAGTTTTAAAACGTGTCTACTAGAGAGAGATTTTCACACTCTTATAAGAATGTTTCGTTCATTCTCCACTCCAACTGGTGTGGAATCTCACAATCTACCCCTTTAGGATCCCAGCGTCCTCGCTGACACACCGCTCAATGTCTGACACCCAATCTCTAGCATATATTATCCCCTTTCTCACGTTTACTAGGGAGAGGTTTCTACACTGTTATAAGAGCGTTTCGTTTCACACTCCAACCGATGTGAGATCTGACAATCATTAAATATTTGTTACAAAGATATACGAGTTCAAACACGTGTCTCAATCAAGTAAATGAGACAATAATGATCTCTTTTTGCAGGAAAGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAATAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCATCCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGTCGACGACCTAAACCCCGACACTCATCCCTCTCCCGGACCTCGGCTTGCTGCTGTTTTAGGTGCCACCCAGGATTGATCTTGGGGGAAGATGGCTATCAACTTGAGAGTTAGCATAGGTGTTTAAAGTTGGGAGTATGGATGGCCAATCACCAAATTGGCCTAGGAATAATGTAAAGTATGATGGTGTATTGATCACTCACATCTTCCATAATAAAGTGAATAAATAAGTAATCTATCAATTTAGAGGTACATAAATGAACCAGAACTACATCTAGTCGAGATGATCCTTAGGATAAGATAGCTAAGAAAGACTTTAAAAAATTGAAAGTTACTATTTATACCAATAAAGTG

mRNA sequence

CCCGGAAAATTACTTCTTCCAAACCTGCTTGGCTGAGATTGTATGGCAAGGACTTCTGTGCAGGCGAATGCATTGCTTTTTAGGAAAGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAATAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCATCCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGTCGACGACCTAAACCCCGACACTCATCCCTCTCCCGGACCTCGGCTTGCTGCTGTTTTAGGTGCCACCCAGGATTGATCTTGGGGGAAGATGGCTATCAACTTGAGAGTTAGCATAGGTGTTTAAAGTTGGGAGTATGGATGGCCAATCACCAAATTGGCCTAGGAATAATGTAAAGTATGATGGTGTATTGATCACTCACATCTTCCATAATAAAGTGAATAAATAAGTAATCTATCAATTTAGAGGTACATAAATGAACCAGAACTACATCTAGTCGAGATGATCCTTAGGATAAGATAGCTAAGAAAGACTTTAAAAAATTGAAAGTTACTATTTATACCAATAAAGTG

Coding sequence (CDS)

ATGGCAAGGACTTCTGTGCAGGCGAATGCATTGCTTTTTAGGAAAGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAATAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCATCCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGTCGACGACCTAAACCCCGACACTCATCCCTCTCCCGGACCTCGGCTTGCTGCTGTTTTAGGTGCCACCCAGGATTGA

Protein sequence

MARTSVQANALLFRKVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPSPGPRLAAVLGATQD
BLAST of CmaCh11G017070 vs. TrEMBL
Match: A0A0A0K7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query: 6   VQANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPHPRTGIYF 65
           +QAN L  RK+KQL+ QF  L   S +++       ETETE L YNSSTWVPHPRTGIYF
Sbjct: 3   LQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYF 62

Query: 66  PQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           PQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Sbjct: 63  PQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 102

BLAST of CmaCh11G017070 vs. TrEMBL
Match: A0A0S3SMD8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G048400 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-15
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1

Query: 7  QANALLF---RKVKQLRRQFSSLANSS---HNKEETETEPLSYNSSTWVPHPRTGIYFPQ 66
          ++N LL    ++ K  R +FS  A +S    + E ++T+    +SS WVPHPRTGIYFP+
Sbjct: 8  KSNLLLLGGAKRAKSGRNKFSGTAQASTAESSAEVSKTDRRIEDSSWWVPHPRTGIYFPK 67

Query: 67 GHEWVMKDVPENAASFSPVFWFRDFDGVD 90
          GHEWVM+DVPE+AA  +  FWFR+ DGVD
Sbjct: 68 GHEWVMEDVPEDAARLNQTFWFRNVDGVD 96

BLAST of CmaCh11G017070 vs. TrEMBL
Match: A0A0L9U0M8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g238200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-15
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1

Query: 7  QANALLF---RKVKQLRRQFSSLANSS---HNKEETETEPLSYNSSTWVPHPRTGIYFPQ 66
          ++N LL    ++ K  R +FS  A +S    + E ++T+    +SS WVPHPRTGIYFP+
Sbjct: 8  KSNLLLLGGAKRAKSGRNKFSGTAQASTAESSAEVSKTDRRIEDSSWWVPHPRTGIYFPK 67

Query: 67 GHEWVMKDVPENAASFSPVFWFRDFDGVD 90
          GHEWVM+DVPE+AA  +  FWFR+ DGVD
Sbjct: 68 GHEWVMEDVPEDAARLNQTFWFRNVDGVD 96

BLAST of CmaCh11G017070 vs. TrEMBL
Match: A0A0B0MFA5_GOSAR (Glutamate racemase OS=Gossypium arboreum GN=F383_14699 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1

Query: 11 LLFRKVKQLRRQFSSLANSSH--NKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKD 70
          L+ R+ K++ R  S +A +    NK+    + +  +SS+WVPHP++GIYFP+GHEWVM D
Sbjct: 12 LMLREAKRVERPLSKIAGADREINKKCKSNDDIK-SSSSWVPHPKSGIYFPKGHEWVMDD 71

Query: 71 VPENAASFSPVFWFRDFDGVDDLNPDTH 97
          VP+ AASF   FW R  DGVD      H
Sbjct: 72 VPDRAASFGSSFWVRSVDGVDKPESSAH 98

BLAST of CmaCh11G017070 vs. TrEMBL
Match: M4T4A6_ARAHY (Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 1

Query: 1  MARTSVQANALLFRKVKQLRRQFSSL----ANSSHNKEETETEPLSY----NSSTWVPHP 60
          MAR  V  + LL R  +  RR  S +     +S H  E     P SY    +S+ WVPHP
Sbjct: 1  MARRGV-TDMLLLRTNRGARRTESRVIKFSGSSQHAAESCGGIPKSYGKIEDSTCWVPHP 60

Query: 61 RTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDD 91
          RTGIYFP+GHEWVM DVPE AASF+  +W R+ DGVD+
Sbjct: 61 RTGIYFPKGHEWVMDDVPEGAASFTQTYWLRNVDGVDN 97

BLAST of CmaCh11G017070 vs. TAIR10
Match: AT3G19550.1 (AT3G19550.1 unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-15
Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 1

Query: 1   MARTSV-QANALLFRKVKQL--RRQFSSLANSSHNK-----EETETEPLSYNSS--TWVP 60
           M RT + +A  LL R  KQ   R   SS A  S+       E+     L ++    +WVP
Sbjct: 1   MGRTGIAKAPKLLLRSWKQFQGRAGISSKAAKSNPMIVDYFEDISDHNLKFSGEEESWVP 60

Query: 61  HPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPSP 100
           HPRTGI+FP G E VM+DVP  AASF   FW R+ DGVD  +PD H  P
Sbjct: 61  HPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPDLHHLP 109

BLAST of CmaCh11G017070 vs. NCBI nr
Match: gi|659110055|ref|XP_008455025.1| (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-28
Identity = 68/107 (63.55%), Postives = 80/107 (74.77%), Query Frame = 1

Query: 1   MARTSV--QANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPH 60
           M+RT +  QAN L  RK+KQL+RQF SL   S +++       ETET+ L YNSSTWVPH
Sbjct: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           PRTGIYFPQGHEWVMKD+PENAASFS + WFRD D VDDLN + + S
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTS 107

BLAST of CmaCh11G017070 vs. NCBI nr
Match: gi|778724901|ref|XP_011658881.1| (PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 1

Query: 3   RTSVQANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPHPRTG 62
           R  +QAN L  RK+KQL+ QF  L   S +++       ETETE L YNSSTWVPHPRTG
Sbjct: 5   RMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTG 64

Query: 63  IYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           IYFPQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Sbjct: 65  IYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 107

BLAST of CmaCh11G017070 vs. NCBI nr
Match: gi|700188628|gb|KGN43861.1| (hypothetical protein Csa_7G071500 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-27
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query: 6   VQANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPHPRTGIYF 65
           +QAN L  RK+KQL+ QF  L   S +++       ETETE L YNSSTWVPHPRTGIYF
Sbjct: 3   LQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYF 62

Query: 66  PQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           PQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Sbjct: 63  PQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 102

BLAST of CmaCh11G017070 vs. NCBI nr
Match: gi|743858129|ref|XP_011030368.1| (PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica])

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1

Query: 48 WVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDT 96
          WVPHPRTGIYFP+GHEWVM DVPENAASFS  +W R+ DGV+   PDT
Sbjct: 52 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 99

BLAST of CmaCh11G017070 vs. NCBI nr
Match: gi|920693007|gb|KOM36232.1| (hypothetical protein LR48_Vigan02g238200 [Vigna angularis])

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-15
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1

Query: 7  QANALLF---RKVKQLRRQFSSLANSS---HNKEETETEPLSYNSSTWVPHPRTGIYFPQ 66
          ++N LL    ++ K  R +FS  A +S    + E ++T+    +SS WVPHPRTGIYFP+
Sbjct: 8  KSNLLLLGGAKRAKSGRNKFSGTAQASTAESSAEVSKTDRRIEDSSWWVPHPRTGIYFPK 67

Query: 67 GHEWVMKDVPENAASFSPVFWFRDFDGVD 90
          GHEWVM+DVPE+AA  +  FWFR+ DGVD
Sbjct: 68 GHEWVMEDVPEDAARLNQTFWFRNVDGVD 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7S0_CUCSA1.2e-2765.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1[more]
A0A0S3SMD8_PHAAN5.3e-1550.56Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G048400 PE=... [more]
A0A0L9U0M8_PHAAN5.3e-1550.56Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g238200 PE=4 SV=1[more]
A0A0B0MFA5_GOSAR2.6e-1446.59Glutamate racemase OS=Gossypium arboreum GN=F383_14699 PE=4 SV=1[more]
M4T4A6_ARAHY2.6e-1450.00Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G19550.14.7e-1544.95 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659110055|ref|XP_008455025.1|3.5e-2863.55PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo][more]
gi|778724901|ref|XP_011658881.1|1.0e-2764.08PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus][more]
gi|700188628|gb|KGN43861.1|1.7e-2765.00hypothetical protein Csa_7G071500 [Cucumis sativus][more]
gi|743858129|ref|XP_011030368.1|5.8e-1575.00PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica][more]
gi|920693007|gb|KOM36232.1|7.6e-1550.56hypothetical protein LR48_Vigan02g238200 [Vigna angularis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G017070.1CmaCh11G017070.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA5-typePFAMPF03242LEA_3coord: 27..62
score: 2.
NoneNo IPR availablePANTHERPTHR35109FAMILY NOT NAMEDcoord: 1..106
score: 8.4

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G017070Cucurbita pepo (Zucchini)cmacpeB108
CmaCh11G017070Cucurbita pepo (Zucchini)cmacpeB114
CmaCh11G017070Cucurbita pepo (Zucchini)cmacpeB136
CmaCh11G017070Cucurbita pepo (Zucchini)cmacpeB160
CmaCh11G017070Bottle gourd (USVL1VR-Ls)cmalsiB115
CmaCh11G017070Bottle gourd (USVL1VR-Ls)cmalsiB121
CmaCh11G017070Bottle gourd (USVL1VR-Ls)cmalsiB153
CmaCh11G017070Cucumber (Gy14) v2cgybcmaB158
CmaCh11G017070Cucumber (Gy14) v2cgybcmaB478
CmaCh11G017070Melon (DHL92) v3.6.1cmamedB135
CmaCh11G017070Melon (DHL92) v3.6.1cmamedB152
CmaCh11G017070Silver-seed gourdcarcmaB0248
CmaCh11G017070Silver-seed gourdcarcmaB0405
CmaCh11G017070Silver-seed gourdcarcmaB0525
CmaCh11G017070Cucumber (Chinese Long) v3cmacucB0128
CmaCh11G017070Cucumber (Chinese Long) v3cmacucB0153
CmaCh11G017070Watermelon (97103) v2cmawmbB127
CmaCh11G017070Watermelon (97103) v2cmawmbB148
CmaCh11G017070Wax gourdcmawgoB0116
CmaCh11G017070Wax gourdcmawgoB0129
CmaCh11G017070Wax gourdcmawgoB0145
CmaCh11G017070Cucurbita maxima (Rimu)cmacmaB032
CmaCh11G017070Cucurbita maxima (Rimu)cmacmaB135
CmaCh11G017070Cucurbita maxima (Rimu)cmacmaB149
CmaCh11G017070Cucurbita maxima (Rimu)cmacmaB163
CmaCh11G017070Cucurbita maxima (Rimu)cmacmaB167
CmaCh11G017070Cucurbita moschata (Rifu)cmacmoB098
CmaCh11G017070Cucurbita moschata (Rifu)cmacmoB133
CmaCh11G017070Cucurbita moschata (Rifu)cmacmoB156
CmaCh11G017070Wild cucumber (PI 183967)cmacpiB132
CmaCh11G017070Melon (DHL92) v3.5.1cmameB141
CmaCh11G017070Watermelon (Charleston Gray)cmawcgB126
CmaCh11G017070Watermelon (Charleston Gray)cmawcgB140
CmaCh11G017070Watermelon (97103) v1cmawmB115