Carg16343 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16343
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP synthase subunit beta like
Location	Cucurbita_argyrosperma_scaffold_088 : 394772 .. 395017 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCTCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACAAATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTCCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGCCGGGATTGA

mRNA sequence

ATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCTCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACAAATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTCCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGCCGGGATTGA

Coding sequence (CDS)

ATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCTCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACAAATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTCCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGCCGGGATTGA

Protein sequence

MASTGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPDTVFGSRD

Homology

[Close]

BLAST of Carg16343 vs. NCBI nr
Match: KGN43861.1 (hypothetical protein Csa_7G071500 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 3  STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWF 62
          ST Q+A ++++DE ETE L YNS TWVPH RT IY+P GHEWVMKDIP NAASF R  WF
Sbjct: 27 STSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWF 86

Query: 63 RDSDGVDDLNPD 75
          RDSD VDDLNPD
Sbjct: 87 RDSDDVDDLNPD 98

[Close]

BLAST of Carg16343 vs. NCBI nr
Match: XP_011658881.1 (PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 3   STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWF 62
           ST Q+A ++++DE ETE L YNS TWVPH RT IY+P GHEWVMKDIP NAASF R  WF
Sbjct: 32  STSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWF 91

Query: 63  RDSDGVDDLNPD 75
           RDSD VDDLNPD
Sbjct: 92  RDSDDVDDLNPD 103

[Close]

BLAST of Carg16343 vs. NCBI nr
Match: XP_022989019.1 (uncharacterized protein LOC111486209 [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-22
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 8  ATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDG 67
          ++H +E E ETEPL+YNS TWVPH RT IY+P GHEWVMKD+P NAASFS  +WFRD DG
Sbjct: 29 SSHNKE-ETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDG 88

Query: 68 VDDLNPDT 76
          VDDLNPDT
Sbjct: 89 VDDLNPDT 95

[Close]

BLAST of Carg16343 vs. NCBI nr
Match: XP_023531513.1 (uncharacterized protein LOC111793725 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-22
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 8  ATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDG 67
          ++H +E E ETEPL+YNS TWVPH RT IY+P GHEWVMKD+P NAASFS  +WFRD DG
Sbjct: 29 SSHNKE-ETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDG 88

Query: 68 VDDLNPDT 76
          VDDLNPDT
Sbjct: 89 VDDLNPDT 95

[Close]

BLAST of Carg16343 vs. NCBI nr
Match: XP_008455025.1 (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 3   STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWF 62
           ST Q+  ++++DE ET+ L YNS TWVPH RT IY+P GHEWVMKDIP NAASFSR  WF
Sbjct: 32  STSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFSRLCWF 91

Query: 63  RDSDGVDDLNPDTVFGSR 81
           RDSD VDDLN +    SR
Sbjct: 92  RDSDDVDDLNHENNTSSR 109

[Close]

BLAST of Carg16343 vs. TAIR10
Match: AT3G19550.1 (unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-12
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 27  TWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPD 75
           +WVPH RT I++PPG E VM+D+P  AASF   +W R+ DGVD  +PD
Sbjct: 57  SWVPHPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPD 104

[Close]

BLAST of Carg16343 vs. TrEMBL
Match: tr|A0A0A0K7S0|A0A0A0K7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.2e-23
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 3  STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWF 62
          ST Q+A ++++DE ETE L YNS TWVPH RT IY+P GHEWVMKDIP NAASF R  WF
Sbjct: 27 STSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWF 86

Query: 63 RDSDGVDDLNPD 75
          RDSD VDDLNPD
Sbjct: 87 RDSDDVDDLNPD 98

[Close]

BLAST of Carg16343 vs. TrEMBL
Match: tr|A0A1S3C0N8|A0A1S3C0N8_CUCME (uncharacterized protein LOC103495298 OS=Cucumis melo OX=3656 GN=LOC103495298 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 3   STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWF 62
           ST Q+  ++++DE ET+ L YNS TWVPH RT IY+P GHEWVMKDIP NAASFSR  WF
Sbjct: 32  STSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFSRLCWF 91

Query: 63  RDSDGVDDLNPDTVFGSR 81
           RDSD VDDLN +    SR
Sbjct: 92  RDSDDVDDLNHENNTSSR 109

[Close]

BLAST of Carg16343 vs. TrEMBL
Match: tr|B9GHV7|B9GHV7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G296900v3 PE=4 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 5.6e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 28 WVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPDT 76
          WVPH RT IY+P GHEWVM D+P NAASFS+ YW R+ DGV+   PDT
Sbjct: 50 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 97

[Close]

BLAST of Carg16343 vs. TrEMBL
Match: tr|A0A200R2X4|A0A200R2X4_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9047g17 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-11
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 24  NSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPD 75
           N   W+PH RT IYYP GHEWVM+D+P  AASF + YW R+++GVD  +PD
Sbjct: 60  NMSWWIPHPRTGIYYPKGHEWVMEDLPDGAASFRQTYWLRNAEGVDKPSPD 110

[Close]

BLAST of Carg16343 vs. TrEMBL
Match: tr|A0A061E251|A0A061E251_THECC (Late embryogenesis abundant protein Lea5, putative OS=Theobroma cacao OX=3641 GN=TCM_007188 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 24 NSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPDTV 77
          +SP+WVPH ++ IY+P GHEWVM D+P +AAS    +W R+ DGV+  +PD V
Sbjct: 47 DSPSWVPHPKSGIYFPKGHEWVMNDVPDDAASLGSTFWLRNVDGVEKPDPDEV 99

The following BLAST results are available for this feature:

BLAST of Carg16343 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43861.1	1.4e-22	72.22	hypothetical protein Csa_7G071500 [Cucumis sativus]	[more]
XP_011658881.1	1.4e-22	72.22	PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus]	[more]
XP_022989019.1	4.1e-22	73.53	uncharacterized protein LOC111486209 [Cucurbita maxima]	[more]
XP_023531513.1	4.1e-22	73.53	uncharacterized protein LOC111793725 [Cucurbita pepo subsp. pepo]	[more]
XP_008455025.1	1.5e-21	65.38	PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo]	[more]

BLAST of Carg16343 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19550.1	4.6e-12	56.25	unknown protein	[more]

BLAST of Carg16343 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16343 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7S0\|A0A0A0K7S0_CUCSA	9.2e-23	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071500 PE=4 SV=1	[more]
tr\|A0A1S3C0N8\|A0A1S3C0N8_CUCME	1.0e-21	65.38	uncharacterized protein LOC103495298 OS=Cucumis melo OX=3656 GN=LOC103495298 PE=...	[more]
tr\|B9GHV7\|B9GHV7_POPTR	5.6e-12	66.67	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G296900v3 PE=...	[more]
tr\|A0A200R2X4\|A0A200R2X4_9MAGN	3.6e-11	58.82	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9047g17 PE=4 SV=1	[more]
tr\|A0A061E251\|A0A061E251_THECC	2.4e-10	52.83	Late embryogenesis abundant protein Lea5, putative OS=Theobroma cacao OX=3641 GN...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16343-RA	Carg16343-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR35109:SF1	SUBFAMILY NOT NAMED	coord: 12..75
None	No IPR available	PANTHER	PTHR35109	FAMILY NOT NAMED	coord: 12..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16343	Cla016083	Watermelon (97103) v1	carwmB0455
Carg16343	Csa7G071500	Cucumber (Chinese Long) v2	carcuB0487
Carg16343	MELO3C018509	Melon (DHL92) v3.5.1	carmeB0460
Carg16343	ClCG02G006680	Watermelon (Charleston Gray)	carwcgB0445
Carg16343	CSPI07G06970	Wild cucumber (PI 183967)	carcpiB0493
Carg16343	Cucsa.219260	Cucumber (Gy14) v1	carcgyB0524
Carg16343	CmaCh11G017070	Cucurbita maxima (Rimu)	carcmaB0630
Carg16343	CmoCh11G014110	Cucurbita moschata (Rifu)	carcmoB0612
Carg16343	CmoCh19G005750	Cucurbita moschata (Rifu)	carcmoB0615
Carg16343	Lsi03G005650	Bottle gourd (USVL1VR-Ls)	carlsiB411
Carg16343	Cp4.1LG04g07630	Cucurbita pepo (Zucchini)	carcpeB0639
Carg16343	Cp4.1LG15g04490	Cucurbita pepo (Zucchini)	carcpeB0637
Carg16343	CsGy7G006510	Cucumber (Gy14) v2	carcgybB0464
Carg16343	MELO3C018509.2	Melon (DHL92) v3.6.1	carmedB0463
Carg16343	CsaV3_7G007950	Cucumber (Chinese Long) v3	carcucB0490
Carg16343	Cla97C02G033670	Watermelon (97103) v2	carwmbB0477
Carg16343	Bhi05G000888	Wax gourd	carwgoB0550

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16343	Carg26999	Silver-seed gourd	carcarB228

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16343	Silver-seed gourd	carcarB402
Carg16343	Cucurbita maxima (Rimu)	carcmaB0632
Carg16343	Cucurbita maxima (Rimu)	carcmaB0634
Carg16343	Cucurbita moschata (Rifu)	carcmoB0616
Carg16343	Bottle gourd (USVL1VR-Ls)	carlsiB414
Carg16343	Watermelon (97103) v2	carwmbB0478
Carg16343	Watermelon (97103) v2	carwmbB0480
Carg16343	Wax gourd	carwgoB0548
Carg16343	Wax gourd	carwgoB0552
Carg16343	Wax gourd	carwgoB0555