Cucsa.219260 (gene) Cucumber (Gy14) v1

NameCucsa.219260
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLate embryogenesis abundant protein Lea5, putative
Locationscaffold01658 : 1107231 .. 1107512 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAATTGAAATGGCAGTTTCGGGGTCTTGTAATTGATTCCACAAGCCAACAAGCCCTAAATAAAAAAGATGATGAGACAGAAACCGAGTCATTGCCCTATAACTCATCGACTTGGGTGCCTCATCCTCGCACTGGAATTtACTTTCCTCAAGGCCATGAGTGGGTCATGAAAGACATCCCTGAAAATGCAGCTTCCTTCCCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTTGATGACTTGAACCCTGATAAGGATACCTCTTCGACGTCTTGA

mRNA sequence

ATGAAGCAATTGAAATGGCAGTTTCGGGGTCTTGTAATTGATTCCACAAGCCAACAAGCCCTAAATAAAAAAGATGATGAGACAGAAACCGAGTCATTGCCCTATAACTCATCGACTTGGGTGCCTCATCCTCGCACTGGAATTTACTTTCCTCAAGGCCATGAGTGGGTCATGAAAGACATCCCTGAAAATGCAGCTTCCTTCCCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTTGATGACTTGAACCCTGATAAGGATACCTCTTCGACGTCTTGA

Coding sequence (CDS)

ATGAAGCAATTGAAATGGCAGTTTCGGGGTCTTGTAATTGATTCCACAAGCCAACAAGCCCTAAATAAAAAAGATGATGAGACAGAAACCGAGTCATTGCCCTATAACTCATCGACTTGGGTGCCTCATCCTCGCACTGGAATTtACTTTCCTCAAGGCCATGAGTGGGTCATGAAAGACATCCCTGAAAATGCAGCTTCCTTCCCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTTGATGACTTGAACCCTGATAAGGATACCTCTTCGACGTCTTGA

Protein sequence

MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS*
BLAST of Cucsa.219260 vs. TrEMBL
Match: A0A0A0K7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1   MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD 60
           MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD
Sbjct: 13  MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD 72

Query: 61  IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 94
           IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS
Sbjct: 73  IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 105

BLAST of Cucsa.219260 vs. TrEMBL
Match: I3SYX4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1

Query: 16  TSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFR 75
           T+ Q   K + E+  ++    +  W+PHPRTGIYFP GHEWVM+D+P+ AA+F + CWFR
Sbjct: 33  TTIQPTAKLETESSRDAKTRGNGCWIPHPRTGIYFPVGHEWVMEDVPDGAANFGQTCWFR 92

Query: 76  DS--DDVDDLNPDKD 89
           ++  D VD+  P  D
Sbjct: 93  NNAVDAVDNPIPKPD 107

BLAST of Cucsa.219260 vs. TrEMBL
Match: B9GHV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30410g PE=4 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 3.5e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1

Query: 40 WVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 87
          WVPHPRTGIYFP+GHEWVM D+PENAASF +  W R+ D V+   PD
Sbjct: 50 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPD 96

BLAST of Cucsa.219260 vs. TrEMBL
Match: A0A103XM77_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004619 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-12
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1

Query: 10  GLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFP 69
           G + D    Q+   K    E+E   +  + W+PHPRTGIY+P+G+EWVM+D+P+ AASFP
Sbjct: 39  GKIDDQREVQSFMHKVHGQESEYEEHEQNCWIPHPRTGIYYPKGYEWVMEDVPDGAASFP 98

Query: 70  RLCWFRDSD 79
              WFR++D
Sbjct: 99  HNYWFRNTD 107

BLAST of Cucsa.219260 vs. TrEMBL
Match: M0T9W6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 36 NSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSS 92
          ++S W+PHPRTGIY+P+GHEWVM+D+PE A+SFPR  W R S+ V+    D D S+
Sbjct: 36 DASWWIPHPRTGIYYPKGHEWVMEDVPEGASSFPRTYWLRSSEGVE---KDSDLST 88

BLAST of Cucsa.219260 vs. TAIR10
Match: AT3G19550.1 (AT3G19550.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1

Query: 39  TWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 87
           +WVPHPRTGI+FP G E VM+D+P  AASF    W R+ D VD  +PD
Sbjct: 57  SWVPHPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPD 104

BLAST of Cucsa.219260 vs. NCBI nr
Match: gi|778724901|ref|XP_011658881.1| (PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1   MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD 60
           MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD
Sbjct: 18  MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD 77

Query: 61  IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 94
           IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS
Sbjct: 78  IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 110

BLAST of Cucsa.219260 vs. NCBI nr
Match: gi|700188628|gb|KGN43861.1| (hypothetical protein Csa_7G071500 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1   MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD 60
           MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD
Sbjct: 13  MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD 72

Query: 61  IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 94
           IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS
Sbjct: 73  IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 105

BLAST of Cucsa.219260 vs. NCBI nr
Match: gi|659110055|ref|XP_008455025.1| (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-41
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 1

Query: 1   MKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKD 60
           MKQLK QFR LVIDSTSQQ LNKKDDETET+SLPYNSSTWVPHPRTGIYFPQGHEWVMKD
Sbjct: 18  MKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKD 77

Query: 61  IPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 94
           IPENAASF RLCWFRDSDDVDDLN + +TSS S
Sbjct: 78  IPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 110

BLAST of Cucsa.219260 vs. NCBI nr
Match: gi|388514809|gb|AFK45466.1| (unknown [Lotus japonicus])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1

Query: 16  TSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFR 75
           T+ Q   K + E+  ++    +  W+PHPRTGIYFP GHEWVM+D+P+ AA+F + CWFR
Sbjct: 33  TTIQPTAKLETESSRDAKTRGNGCWIPHPRTGIYFPVGHEWVMEDVPDGAANFGQTCWFR 92

Query: 76  DS--DDVDDLNPDKD 89
           ++  D VD+  P  D
Sbjct: 93  NNAVDAVDNPIPKPD 107

BLAST of Cucsa.219260 vs. NCBI nr
Match: gi|566151837|ref|XP_002300257.2| (hypothetical protein POPTR_0001s30410g [Populus trichocarpa])

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1

Query: 40 WVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 87
          WVPHPRTGIYFP+GHEWVM D+PENAASF +  W R+ D V+   PD
Sbjct: 50 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPD 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K7S0_CUCSA2.8e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1[more]
I3SYX4_LOTJA1.6e-1246.67Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
B9GHV7_POPTR3.5e-1268.09Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30410g PE=4 SV=2[more]
A0A103XM77_CYNCS6.0e-1246.38Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004619 PE=4 ... [more]
M0T9W6_MUSAM6.0e-1257.14Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G19550.11.2e-1158.33 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778724901|ref|XP_011658881.1|4.0e-49100.00PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus][more]
gi|700188628|gb|KGN43861.1|4.0e-49100.00hypothetical protein Csa_7G071500 [Cucumis sativus][more]
gi|659110055|ref|XP_008455025.1|1.4e-4189.25PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo][more]
gi|388514809|gb|AFK45466.1|2.3e-1246.67unknown [Lotus japonicus][more]
gi|566151837|ref|XP_002300257.2|5.1e-1268.09hypothetical protein POPTR_0001s30410g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.219260.1Cucsa.219260.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA5-typePFAMPF03242LEA_3coord: 20..54
score: 5.
NoneNo IPR availablePANTHERPTHR35109FAMILY NOT NAMEDcoord: 38..86
score: 1.4

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.219260Wax gourdcgywgoB443
Cucsa.219260Wax gourdcgywgoB445
Cucsa.219260Wax gourdcgywgoB452
Cucsa.219260Wax gourdcgywgoB454
Cucsa.219260Cucumber (Gy14) v1cgycgyB118
Cucsa.219260Cucumber (Gy14) v1cgycgyB119
Cucsa.219260Cucurbita maxima (Rimu)cgycmaB0623
Cucsa.219260Cucurbita maxima (Rimu)cgycmaB0624
Cucsa.219260Cucurbita maxima (Rimu)cgycmaB0629
Cucsa.219260Cucurbita moschata (Rifu)cgycmoB0621
Cucsa.219260Cucurbita moschata (Rifu)cgycmoB0625
Cucsa.219260Cucurbita moschata (Rifu)cgycmoB0626
Cucsa.219260Cucurbita moschata (Rifu)cgycmoB0632
Cucsa.219260Wild cucumber (PI 183967)cgycpiB331
Cucsa.219260Wild cucumber (PI 183967)cgycpiB334
Cucsa.219260Cucumber (Chinese Long) v2cgycuB318
Cucsa.219260Cucumber (Chinese Long) v2cgycuB321
Cucsa.219260Melon (DHL92) v3.5.1cgymeB380
Cucsa.219260Melon (DHL92) v3.5.1cgymeB382
Cucsa.219260Watermelon (Charleston Gray)cgywcgB393
Cucsa.219260Watermelon (Charleston Gray)cgywcgB398
Cucsa.219260Watermelon (Charleston Gray)cgywcgB399
Cucsa.219260Watermelon (97103) v1cgywmB421
Cucsa.219260Watermelon (97103) v1cgywmB422
Cucsa.219260Watermelon (97103) v1cgywmB424
Cucsa.219260Cucurbita pepo (Zucchini)cgycpeB0592
Cucsa.219260Cucurbita pepo (Zucchini)cgycpeB0593
Cucsa.219260Cucurbita pepo (Zucchini)cgycpeB0599
Cucsa.219260Cucurbita pepo (Zucchini)cgycpeB0603
Cucsa.219260Bottle gourd (USVL1VR-Ls)cgylsiB366
Cucsa.219260Bottle gourd (USVL1VR-Ls)cgylsiB368
Cucsa.219260Bottle gourd (USVL1VR-Ls)cgylsiB370
Cucsa.219260Melon (DHL92) v3.6.1cgymedB378
Cucsa.219260Melon (DHL92) v3.6.1cgymedB380
Cucsa.219260Melon (DHL92) v3.6.1cgymedB381
Cucsa.219260Silver-seed gourdcarcgyB0221
Cucsa.219260Silver-seed gourdcarcgyB0344
Cucsa.219260Silver-seed gourdcarcgyB0434
Cucsa.219260Silver-seed gourdcarcgyB0873
Cucsa.219260Cucumber (Chinese Long) v3cgycucB336
Cucsa.219260Cucumber (Chinese Long) v3cgycucB339
Cucsa.219260Cucumber (Chinese Long) v3cgycucB340
Cucsa.219260Watermelon (97103) v2cgywmbB397
Cucsa.219260Watermelon (97103) v2cgywmbB396
Cucsa.219260Watermelon (97103) v2cgywmbB393
Cucsa.219260Watermelon (97103) v2cgywmbB398