CmoCh19G005750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G005750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Genomic DNA, chromosome 3, BAC clone: T31J18
Location	Cmo_Chr19 : 6556101 .. 6557480 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAACTTGCATGGCTATGCAGGCAAAAGCATTGTTTCTTAGGTAAATTAATGTTCCCTTTTGACGTTTTTTTGTGTTCAAATAGTTCAACGACCCGTAGAGCCGGTAGATTCAAACTTTTAACCCGTTGATCGCTCGTGTGTCGTGTTTGAGTTTAAACTATAATTTAGTGTTTTTTTTCACTGGCTTACGAAAAAGTCTATAAGATCGTTTGATTCCGTGAATTGGAGTCGGGAACTGGTAGCTATGTTGTTAGACACGGAAATAGTGTATTCCGAGACATAATTTATTATCATGAATAAAGATATTCATGAGATGAAATGTAACAGTCCAAACCCACCGCTAGTAAATATTGTCGTATTTATAGAATTAGACATGAAAATAGTGTCTGCACAACATTCTCGTACAACATGACTACGTTATTATTTGTCTTGAACTAACTTATAGAAGTAAAGACTCTCTGCACGAGCTAACCATGTTTTTTTATGATGTTTTGTTTTCACTCACATACCTAAAATTTTGAATTTACTCGATACATAATTTTTCTAAGCTTTAACATGCTTAATTTTATAATACACATTATTGGTATATATAGTAATTTTTAATTATTTAAGTATTTCTTAAAGATCATATCCTCATGACTACTTTCATGCTGATGTCTCTTTTACTCGAACGTTACAGATAATGACCTCAATTTCATAAATTTTAAACATTTATTTTATCTGGGTGAATGAATTAATAGTATATTAGATAAGCATAAAGCTAGAATGGTCGAGTTATTGGTCACAGGACCTGCACCGAGTTGGTGGCTTACTGGGCTTTTTCCTAGATAAAATCAGATCAATTCGCCTTCTTGTTATTCAAAAGTCGGTTGAATTGAGTAGGCTCCCGCCCCGTAGCGTCGAATGAAATAGGTAGTCGGGTTCTCTTTCGACAACCCTTTTGATATGATAGGCCCGGTGACCTCAATTCAGTGGAATTTTTTATTCACATTTTTTAAGTCAATTCAATCTCGTTTTAAGTCAAGCTCGGATAAACATGACTCGAACGTTTATGGTGAATTTGAAAATTTTTGAAGGCTAATTAGTTGCATGGCAGGAAAGTGAGGCGCCAATTGAGCAGCCTTGTAATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCTCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACAAATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTCCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGCCGGGATTGA

mRNA sequence

ATGGCAAGAACTTGCATGGCTATGCAGGCAAAAGCATTGTTTCTTAGGAAAGTGAGGCGCCAATTGAGCAGCCTTGTAATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCTCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACAAATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTCCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGCCGGGATTGA

Coding sequence (CDS)

ATGGCAAGAACTTGCATGGCTATGCAGGCAAAAGCATTGTTTCTTAGGAAAGTGAGGCGCCAATTGAGCAGCCTTGTAATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCTCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACAAATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTCCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGCCGGGATTGA

Homology

[Close]

BLAST of CmoCh19G005750 vs. TrEMBL
Match: A0A0A0K7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 6   MAMQAKALFLRKVRR---QLSSLVMASTGQRATHQREDEAETEPLAYNSPTWVPHSRTRI 65
           M +QA  LFLRK+++   Q   LV+ ST Q+A ++++DE ETE L YNS TWVPH RT I
Sbjct: 1   MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI 60

Query: 66  YYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPD 101
           Y+P GHEWVMKDIP NAASF R  WFRDSD VDDLNPD
Sbjct: 61  YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 98

[Close]

BLAST of CmoCh19G005750 vs. TrEMBL
Match: B9GHV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30410g PE=4 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 54  WVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPDT 102
           WVPH RT IY+P GHEWVM D+P NAASFS+ YW R+ DGV+   PDT
Sbjct: 50  WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 97

[Close]

BLAST of CmoCh19G005750 vs. TrEMBL
Match: M4T4A6_ARAHY (Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 50 NSPTWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDD 97
          +S  WVPH RT IY+P GHEWVM D+P  AASF++ YW R+ DGVD+
Sbjct: 51 DSTCWVPHPRTGIYFPKGHEWVMDDVPEGAASFTQTYWLRNVDGVDN 97

[Close]

BLAST of CmoCh19G005750 vs. TrEMBL
Match: A0A0L9U0M8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g238200 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 19 RRQLSSLVMASTGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTN 78
          R + S    AST + +    + +   E    +S  WVPH RT IY+P GHEWVM+D+P +
Sbjct: 24 RNKFSGTAQASTAESSAEVSKTDRRIE----DSSWWVPHPRTGIYFPKGHEWVMEDVPED 83

Query: 79 AASFSRPYWFRDSDGVD 96
          AA  ++ +WFR+ DGVD
Sbjct: 84 AARLNQTFWFRNVDGVD 96

[Close]

BLAST of CmoCh19G005750 vs. TrEMBL
Match: A0A0S3SMD8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G048400 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 19 RRQLSSLVMASTGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTN 78
          R + S    AST + +    + +   E    +S  WVPH RT IY+P GHEWVM+D+P +
Sbjct: 24 RNKFSGTAQASTAESSAEVSKTDRRIE----DSSWWVPHPRTGIYFPKGHEWVMEDVPED 83

Query: 79 AASFSRPYWFRDSDGVD 96
          AA  ++ +WFR+ DGVD
Sbjct: 84 AARLNQTFWFRNVDGVD 96

[Close]

BLAST of CmoCh19G005750 vs. TAIR10
Match: AT3G19550.1 (AT3G19550.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-12
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 53  TWVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPD 101
           +WVPH RT I++PPG E VM+D+P  AASF   +W R+ DGVD  +PD
Sbjct: 57  SWVPHPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPD 104

[Close]

BLAST of CmoCh19G005750 vs. NCBI nr
Match: gi|778724901|ref|XP_011658881.1| (PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MARTCMAMQAKALFLRKVRR---QLSSLVMASTGQRATHQREDEAETEPLAYNSPTWVPH 60
           M RT M +QA  LFLRK+++   Q   LV+ ST Q+A ++++DE ETE L YNS TWVPH
Sbjct: 1   MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPH 60

Query: 61  SRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPD 101
            RT IY+P GHEWVMKDIP NAASF R  WFRDSD VDDLNPD
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 103

[Close]

BLAST of CmoCh19G005750 vs. NCBI nr
Match: gi|659110055|ref|XP_008455025.1| (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 3.7e-27
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 1


Query: 1   MARTCMAMQAKALFLRKVR---RQLSSLVMASTGQRATHQREDEAETEPLAYNSPTWVPH 60
           M+RT + +QA  LFLRK++   RQ  SLV+ ST Q+  ++++DE ET+ L YNS TWVPH
Sbjct: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60

Query: 61  SRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPDTVFGSR 107
            RT IY+P GHEWVMKDIP NAASFSR  WFRDSD VDDLN +    SR
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSR 109

[Close]

BLAST of CmoCh19G005750 vs. NCBI nr
Match: gi|700188628|gb|KGN43861.1| (hypothetical protein Csa_7G071500 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 6   MAMQAKALFLRKVRR---QLSSLVMASTGQRATHQREDEAETEPLAYNSPTWVPHSRTRI 65
           M +QA  LFLRK+++   Q   LV+ ST Q+A ++++DE ETE L YNS TWVPH RT I
Sbjct: 1   MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI 60

Query: 66  YYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPD 101
           Y+P GHEWVMKDIP NAASF R  WFRDSD VDDLNPD
Sbjct: 61  YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 98

[Close]

BLAST of CmoCh19G005750 vs. NCBI nr
Match: gi|566151837|ref|XP_002300257.2| (hypothetical protein POPTR_0001s30410g [Populus trichocarpa])

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 54  WVPHSRTRIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPDT 102
           WVPH RT IY+P GHEWVM D+P NAASFS+ YW R+ DGV+   PDT
Sbjct: 50  WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 97

[Close]

BLAST of CmoCh19G005750 vs. NCBI nr
Match: gi|743858129|ref|XP_011030368.1| (PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica])

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-11
Identity = 44/101 (43.56%), Postives = 54/101 (53.47%), Query Frame = 1


Query: 1   MARTCMAMQAKALFLRKVRRQLSSLVMASTGQRATHQREDEAETEPLAYNSPTWVPHSRT 60
           MAR  ++  AK L L   R     L    +   A  Q E    +   +     WVPH RT
Sbjct: 1   MARAVLS-NAKMLVLSSCRETSRPLQCHFSSPPAVQQPEKSGNSVKCS-KMGDWVPHPRT 60

Query: 61  RIYYPPGHEWVMKDIPTNAASFSRPYWFRDSDGVDDLNPDT 102
            IY+P GHEWVM D+P NAASFS+ YW R+ DGV+   PDT
Sbjct: 61  GIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 99

The following BLAST results are available for this feature:

BLAST of CmoCh19G005750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G005750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S0_CUCSA	1.3e-26	64.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1	[more]
B9GHV7_POPTR	4.0e-12	66.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30410g PE=4 SV=2	[more]
M4T4A6_ARAHY	2.9e-10	61.70	Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1	[more]
A0A0L9U0M8_PHAAN	3.8e-10	42.86	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g238200 PE=4 SV=1	[more]
A0A0S3SMD8_PHAAN	3.8e-10	42.86	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G048400 PE=...	[more]

BLAST of CmoCh19G005750 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19550.1	6.1e-12	56.25	unknown protein	[more]

BLAST of CmoCh19G005750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724901\|ref\|XP_011658881.1\|	1.3e-27	64.08	PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus]	[more]
gi\|659110055\|ref\|XP_008455025.1\|	3.7e-27	60.55	PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo]	[more]
gi\|700188628\|gb\|KGN43861.1\|	1.8e-26	64.29	hypothetical protein Csa_7G071500 [Cucumis sativus]	[more]
gi\|566151837\|ref\|XP_002300257.2\|	5.8e-12	66.67	hypothetical protein POPTR_0001s30410g [Populus trichocarpa]	[more]
gi\|743858129\|ref\|XP_011030368.1\|	3.7e-11	43.56	PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G005750.1	CmoCh19G005750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35109	FAMILY NOT NAMED	coord: 1..101 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G005750	Cucsa.219260	Cucumber (Gy14) v1	cgycmoB0627
CmoCh19G005750	CmaCh11G017070	Cucurbita maxima (Rimu)	cmacmoB143
CmoCh19G005750	Cla016083	Watermelon (97103) v1	cmowmB496
CmoCh19G005750	Csa7G071500	Cucumber (Chinese Long) v2	cmocuB519
CmoCh19G005750	MELO3C018509	Melon (DHL92) v3.5.1	cmomeB454
CmoCh19G005750	ClCG02G006680	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G005750	CSPI07G06970	Wild cucumber (PI 183967)	cmocpiB525
CmoCh19G005750	Lsi03G005650	Bottle gourd (USVL1VR-Ls)	cmolsiB468
CmoCh19G005750	Cp4.1LG15g04490	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G005750	Cp4.1LG04g07630	Cucurbita pepo (Zucchini)	cmocpeB494
CmoCh19G005750	MELO3C018509.2	Melon (DHL92) v3.6.1	cmomedB523
CmoCh19G005750	CsaV3_7G007950	Cucumber (Chinese Long) v3	cmocucB0623
CmoCh19G005750	Cla97C02G033670	Watermelon (97103) v2	cmowmbB512
CmoCh19G005750	Bhi05G000888	Wax gourd	cmowgoB0659
CmoCh19G005750	CsGy7G006510	Cucumber (Gy14) v2	cgybcmoB928
CmoCh19G005750	Carg16343	Silver-seed gourd	carcmoB0615
CmoCh19G005750	Carg26999	Silver-seed gourd	carcmoB0268

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G005750	CmoCh11G014110	Cucurbita moschata (Rifu)	cmocmoB110

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G005750	Silver-seed gourd	carcmoB0512
CmoCh19G005750	Cucumber (Chinese Long) v3	cmocucB0611
CmoCh19G005750	Watermelon (97103) v2	cmowmbB519
CmoCh19G005750	Wax gourd	cmowgoB0642
CmoCh19G005750	Wax gourd	cmowgoB0670
CmoCh19G005750	Cucurbita moschata (Rifu)	cmocmoB395
CmoCh19G005750	Cucurbita maxima (Rimu)	cmacmoB718
CmoCh19G005750	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G005750	Bottle gourd (USVL1VR-Ls)	cmolsiB469
CmoCh19G005750	Bottle gourd (USVL1VR-Ls)	cmolsiB482
CmoCh19G005750	Cucumber (Gy14) v2	cgybcmoB492
CmoCh19G005750	Melon (DHL92) v3.6.1	cmomedB526
CmoCh19G005750	Melon (DHL92) v3.6.1	cmomedB549