Cp4.1LG15g04490 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g04490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Late embryogenesis abundant protein Lea5, putative
Location	Cp4.1LG15 : 5602269 .. 5602514 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCCCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACACATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTTCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGTCGGGATTGA

mRNA sequence

ATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCCCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACACATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTTCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGTCGGGATTGA

Coding sequence (CDS)

ATGGCGTCCACAGGCCAACGAGCCACACATCAAAGAGAAGACGAGGCAGAGACCGAGCCACTGGCCTATAACTCACCCACTTGGGTGCCCCATTCTCGCACTCGAATTTACTACCCTCCGGGCCATGAGTGGGTCATGAAGGACATCCCTACACATGCAGCTTCCTTCTCTCGACCCTACTGGTTTCGGGATTTCGATGGCGTCGATGACCTGAACCCCGACACCGTTTTCGGCAGTCGGGATTGA

Protein sequence

MASTGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVDDLNPDTVFGSRD

Homology

[Close]

BLAST of Cp4.1LG15g04490 vs. TrEMBL
Match: A0A0A0K7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.2e-22
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 3  STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWF 62
          ST Q+A ++++DE ETE L YNS TWVPH RT IY+P GHEWVMKDIP +AASF R  WF
Sbjct: 27 STSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWF 86

Query: 63 RDFDGVDDLNPD 75
          RD D VDDLNPD
Sbjct: 87 RDSDDVDDLNPD 98

[Close]

BLAST of Cp4.1LG15g04490 vs. TrEMBL
Match: B9GHV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30410g PE=4 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 28 WVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVDDLNPDT 76
          WVPH RT IY+P GHEWVM D+P +AASFS+ YW R+ DGV+   PDT
Sbjct: 50 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 97

[Close]

BLAST of Cp4.1LG15g04490 vs. TrEMBL
Match: A0A061E251_THECC (Late embryogenesis abundant protein Lea5, putative OS=Theobroma cacao GN=TCM_007188 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-10
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 24 NSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVDDLNPDTV 77
          +SP+WVPH ++ IY+P GHEWVM D+P  AAS    +W R+ DGV+  +PD V
Sbjct: 47 DSPSWVPHPKSGIYFPKGHEWVMNDVPDDAASLGSTFWLRNVDGVEKPDPDEV 99

[Close]

BLAST of Cp4.1LG15g04490 vs. TrEMBL
Match: M4T4A6_ARAHY (Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-10
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 24 NSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVDD 71
          +S  WVPH RT IY+P GHEWVM D+P  AASF++ YW R+ DGVD+
Sbjct: 51 DSTCWVPHPRTGIYFPKGHEWVMDDVPEGAASFTQTYWLRNVDGVDN 97

[Close]

BLAST of Cp4.1LG15g04490 vs. TrEMBL
Match: A0A151U7Q7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008017 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.9e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 24 NSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVD 70
          +S  WVPH RT IY+P GHEWVM+D+P  AA  ++ YWFR+ DGVD
Sbjct: 51 SSDWWVPHPRTGIYFPKGHEWVMEDVPADAARLNQTYWFRNVDGVD 96

[Close]

BLAST of Cp4.1LG15g04490 vs. TAIR10
Match: AT3G19550.1 (AT3G19550.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-12
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 27  TWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVDDLNPD 75
           +WVPH RT I++PPG E VM+D+P  AASF   +W R+ DGVD  +PD
Sbjct: 57  SWVPHPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPD 104

[Close]

BLAST of Cp4.1LG15g04490 vs. NCBI nr
Match: gi|778724901|ref|XP_011658881.1| (PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 3   STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWF 62
           ST Q+A ++++DE ETE L YNS TWVPH RT IY+P GHEWVMKDIP +AASF R  WF
Sbjct: 32  STSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWF 91

Query: 63  RDFDGVDDLNPD 75
           RD D VDDLNPD
Sbjct: 92  RDSDDVDDLNPD 103

[Close]

BLAST of Cp4.1LG15g04490 vs. NCBI nr
Match: gi|700188628|gb|KGN43861.1| (hypothetical protein Csa_7G071500 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 3  STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWF 62
          ST Q+A ++++DE ETE L YNS TWVPH RT IY+P GHEWVMKDIP +AASF R  WF
Sbjct: 27 STSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWF 86

Query: 63 RDFDGVDDLNPD 75
          RD D VDDLNPD
Sbjct: 87 RDSDDVDDLNPD 98

[Close]

BLAST of Cp4.1LG15g04490 vs. NCBI nr
Match: gi|659110055|ref|XP_008455025.1| (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 3   STGQRATHQREDEAETEPLAYNSPTWVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWF 62
           ST Q+  ++++DE ET+ L YNS TWVPH RT IY+P GHEWVMKDIP +AASFSR  WF
Sbjct: 32  STSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFSRLCWF 91

Query: 63  RDFDGVDDLNPDTVFGSR 81
           RD D VDDLN +    SR
Sbjct: 92  RDSDDVDDLNHENNTSSR 109

[Close]

BLAST of Cp4.1LG15g04490 vs. NCBI nr
Match: gi|566151837|ref|XP_002300257.2| (hypothetical protein POPTR_0001s30410g [Populus trichocarpa])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 28 WVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVDDLNPDT 76
          WVPH RT IY+P GHEWVM D+P +AASFS+ YW R+ DGV+   PDT
Sbjct: 50 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 97

[Close]

BLAST of Cp4.1LG15g04490 vs. NCBI nr
Match: gi|743858129|ref|XP_011030368.1| (PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 28 WVPHSRTRIYYPPGHEWVMKDIPTHAASFSRPYWFRDFDGVDDLNPDT 76
          WVPH RT IY+P GHEWVM D+P +AASFS+ YW R+ DGV+   PDT
Sbjct: 52 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 99

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g04490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g04490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S0_CUCSA	7.2e-22	69.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1	[more]
B9GHV7_POPTR	6.8e-12	64.58	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30410g PE=4 SV=2	[more]
A0A061E251_THECC	1.7e-10	52.83	Late embryogenesis abundant protein Lea5, putative OS=Theobroma cacao GN=TCM_007...	[more]
M4T4A6_ARAHY	2.8e-10	61.70	Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1	[more]
A0A151U7Q7_CAJCA	4.9e-10	60.87	Uncharacterized protein OS=Cajanus cajan GN=KK1_008017 PE=4 SV=1	[more]

BLAST of Cp4.1LG15g04490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19550.1	6.1e-12	56.25	unknown protein	[more]

BLAST of Cp4.1LG15g04490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724901\|ref\|XP_011658881.1\|	1.0e-21	69.44	PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus]	[more]
gi\|700188628\|gb\|KGN43861.1\|	1.0e-21	69.44	hypothetical protein Csa_7G071500 [Cucumis sativus]	[more]
gi\|659110055\|ref\|XP_008455025.1\|	1.5e-20	62.82	PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo]	[more]
gi\|566151837\|ref\|XP_002300257.2\|	9.7e-12	64.58	hypothetical protein POPTR_0001s30410g [Populus trichocarpa]	[more]
gi\|743858129\|ref\|XP_011030368.1\|	9.7e-12	64.58	PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g04490.1	Cp4.1LG15g04490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35109	FAMILY NOT NAMED	coord: 28..75 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG15g04490	Cucsa.219260	Cucumber (Gy14) v1	cgycpeB0594
Cp4.1LG15g04490	CmaCh11G017070	Cucurbita maxima (Rimu)	cmacpeB116
Cp4.1LG15g04490	CmoCh11G014110	Cucurbita moschata (Rifu)	cmocpeB095
Cp4.1LG15g04490	CmoCh19G005750	Cucurbita moschata (Rifu)	cmocpeB481
Cp4.1LG15g04490	Cla016083	Watermelon (97103) v1	cpewmB268
Cp4.1LG15g04490	Csa7G071500	Cucumber (Chinese Long) v2	cpecuB258
Cp4.1LG15g04490	MELO3C018509	Melon (DHL92) v3.5.1	cpemeB225
Cp4.1LG15g04490	ClCG02G006680	Watermelon (Charleston Gray)	cpewcgB233
Cp4.1LG15g04490	CSPI07G06970	Wild cucumber (PI 183967)	cpecpiB258
Cp4.1LG15g04490	Lsi03G005650	Bottle gourd (USVL1VR-Ls)	cpelsiB208
Cp4.1LG15g04490	MELO3C018509.2	Melon (DHL92) v3.6.1	cpemedB263
Cp4.1LG15g04490	CsaV3_7G007950	Cucumber (Chinese Long) v3	cpecucB0323
Cp4.1LG15g04490	Bhi05G000888	Wax gourd	cpewgoB0331
Cp4.1LG15g04490	CsGy7G006510	Cucumber (Gy14) v2	cgybcpeB911
Cp4.1LG15g04490	Carg16343	Silver-seed gourd	carcpeB0637
Cp4.1LG15g04490	Carg26999	Silver-seed gourd	carcpeB0271

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG15g04490	Cp4.1LG04g07630	Cucurbita pepo (Zucchini)	cpecpeB269

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG15g04490	Cucurbita pepo (Zucchini)	cpecpeB111
Cp4.1LG15g04490	Cucurbita pepo (Zucchini)	cpecpeB282
Cp4.1LG15g04490	Cucurbita pepo (Zucchini)	cpecpeB264
Cp4.1LG15g04490	Cucurbita maxima (Rimu)	cmacpeB522
Cp4.1LG15g04490	Cucumber (Gy14) v2	cgybcpeB186
Cp4.1LG15g04490	Cucumber (Gy14) v2	cgybcpeB493
Cp4.1LG15g04490	Melon (DHL92) v3.6.1	cpemedB266
Cp4.1LG15g04490	Melon (DHL92) v3.6.1	cpemedB285
Cp4.1LG15g04490	Silver-seed gourd	carcpeB1079
Cp4.1LG15g04490	Cucumber (Chinese Long) v3	cpecucB0292
Cp4.1LG15g04490	Cucumber (Chinese Long) v3	cpecucB0311
Cp4.1LG15g04490	Wax gourd	cpewgoB0317
Cp4.1LG15g04490	Wax gourd	cpewgoB0335
Cp4.1LG15g04490	Wax gourd	cpewgoB0344