CsaV3_7G007950 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G007950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLate embryogenesis abundant protein Lea5, putative
Locationchr7 : 4983806 .. 4985314 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACTTTTTTCTTTGCTCCTTTTCATAATTTTCCTTCAAAATTATTTGGTTGATTATAATTACATGGGAAGAACTCGTATGCCTCTGCAAGCAAATCCACTCTTTCTTAGGTAAATTCATCTTTCCCCTTTTTCATGGTTTGATTCCCATATTCTTAAAAGTCCGTTTGAATTGACTTCCTAATTGTTTAAACATGTCCTTTGTTATGTTTAAACATGCTTGTGTTTGTATATGATATTAGTTAAAATAGATTCGATCCATATATATCGTCACTATATTTGGTGTCCAAACATAGATGAGACTATAATAACGTACTCCATTGACTTCTAGTTTGTGTCCCCAACGATCTATCAAACATCGTCCACTGTCGTAAAGTTGTGGAAAGAAAAAGTACTCTATGAGAAAGTGGTTGGAAAAAGAAGGTGGATGAGAAAGTTCAACTTTTCTTCCCCTCTTTGCTGCTGCTTTTTCAAACACAGTTCAGTTTATGATTTCATTTCACCATTTCAAGAATGATTAGGTTATTTTTTATTTGACTCATAGTGCTTTTGAGGATTACTAAAAGGGAATTTTTTGTTAGGATGAAAGTTTAGTTTCCACTCAAAATTGATTTTAAGAGTTGAAAATAGTGTTTTATGAAAAAGTATTGTGTGAGGTTTCAGCTTATTAAGTGCTTCACAAATATGTAGAGGCATTTATCAATTTAAATTAAATTAAATTAATTAGCATTCAATTAATTTGACTATATGACAGGAAAATGAAGCAATTGAAATGGCAATTTCGGGGTCTTGTAATTGATTCCACAAGCCAACAAGCCCTAAATAAAAAAGATGATGAGACAGAAACCGAGTCATTGCCCTATAACTCATCGACTTGGGTGCCTCATCCTCGCACTGGAATTTACTTTCCTCAAGGCCATGAGTGGGTCATGAAAGACATCCCTGAAAATGCAGCTTCCTTCCCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTTGATGACTTGAACCCTGATAAGGATACCTCTTCGACGTCTTGATTTGCCTCTATTTTTAGGGGTCGAGATTGAGCCTTCTTAGGAAAGAAGGTTGTCAATGGGCCAATGAAGAATGTGTTAATGGCTTGACAGTGTATTGCTTGTGAGCTTTTGTTGACAAGAGAGACCCAAAGTGACATTAAAATAATGTAAATTAGTTTATACATATAGGTAAAATATCAAATAATGAAACGAATAAATAATAATTCGAAAGTTTAAACATCTATAAACCCTAAACACTATGGACATTTACTAATTTTGTAATTAAAATTGGTGTAAAGATAATCAAGTTTTATTAACAAATCAATACGTCAATTTGCATTTGTTTTTTATTGTAATGATCTATCTTACCAAATCTACGGTTTTTTCTACCAAATCTCCACTAATAAAAAATTCCCTTCCAATTTGCATCATATTCTTCCAATCAACAAAAAAATCTTTTCAATCATCAATTTGTTTTGCTTTGGTTTCTT

mRNA sequence

ATGGGAAGAACTCGTATGCCTCTGCAAGCAAATCCACTCTTTCTTAGGAAAATGAAGCAATTGAAATGGCAATTTCGGGGTCTTGTAATTGATTCCACAAGCCAACAAGCCCTAAATAAAAAAGATGATGAGACAGAAACCGAGTCATTGCCCTATAACTCATCGACTTGGGTGCCTCATCCTCGCACTGGAATTTACTTTCCTCAAGGCCATGAGTGGGTCATGAAAGACATCCCTGAAAATGCAGCTTCCTTCCCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTTGATGACTTGAACCCTGATAAGGATACCTCTTCGACGTCTTGA

Coding sequence (CDS)

ATGGGAAGAACTCGTATGCCTCTGCAAGCAAATCCACTCTTTCTTAGGAAAATGAAGCAATTGAAATGGCAATTTCGGGGTCTTGTAATTGATTCCACAAGCCAACAAGCCCTAAATAAAAAAGATGATGAGACAGAAACCGAGTCATTGCCCTATAACTCATCGACTTGGGTGCCTCATCCTCGCACTGGAATTTACTTTCCTCAAGGCCATGAGTGGGTCATGAAAGACATCCCTGAAAATGCAGCTTCCTTCCCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTTGATGACTTGAACCCTGATAAGGATACCTCTTCGACGTCTTGA

Protein sequence

MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS
BLAST of CsaV3_7G007950 vs. NCBI nr
Match: XP_011658881.1 (PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.7e-58
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPH 60
           MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPH
Sbjct: 1   MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 111
           PRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 110

BLAST of CsaV3_7G007950 vs. NCBI nr
Match: KGN43861.1 (hypothetical protein Csa_7G071500 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 6   MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI 65
           MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI
Sbjct: 1   MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI 60

Query: 66  YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 111
           YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS
Sbjct: 61  YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 105

BLAST of CsaV3_7G007950 vs. NCBI nr
Match: XP_008455025.1 (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 8.2e-50
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 0

Query: 1   MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPH 60
           M RTR+PLQANPLFLRKMKQLK QFR LVIDSTSQQ LNKKDDETET+SLPYNSSTWVPH
Sbjct: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 111
           PRTGIYFPQGHEWVMKDIPENAASF RLCWFRDSDDVDDLN + +TSS S
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 110

BLAST of CsaV3_7G007950 vs. NCBI nr
Match: XP_022148740.1 (uncharacterized protein LOC111017332 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query: 8   LQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYF 67
           ++AN + LR+MKQL+ QF    ++S +++   +++D  ETE  PYNSSTWVPHPRTGIYF
Sbjct: 49  VKANAILLRRMKQLRRQFSSFAMESKAKEEALQEED-IETEPWPYNSSTWVPHPRTGIYF 108

Query: 68  PQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 108
           PQGHEWVMKD+PENAASF R+CWFRDSD VDD NPD++ S
Sbjct: 109 PQGHEWVMKDVPENAASFSRVCWFRDSDGVDDPNPDQNPS 147

BLAST of CsaV3_7G007950 vs. NCBI nr
Match: XP_022989019.1 (uncharacterized protein LOC111486209 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 6.8e-28
Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 5   RMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTG 64
           R  +QAN L  RK+KQL+ QF  L   S ++       +ETETE L YNSSTWVPHPRTG
Sbjct: 3   RTSVQANALLFRKVKQLRRQFSSLANSSHNK-------EETETEPLSYNSSTWVPHPRTG 62

Query: 65  IYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 108
           IYFPQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Sbjct: 63  IYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 98

BLAST of CsaV3_7G007950 vs. TAIR10
Match: AT3G19550.1 (unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-12
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 0

Query: 1   MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYN--SSTWV 60
           MGRT +  +A  L LR  KQ + +       + S   +    ++    +L ++    +WV
Sbjct: 1   MGRTGI-AKAPKLLLRSWKQFQGRAGISSKAAKSNPMIVDYFEDISDHNLKFSGEEESWV 60

Query: 61  PHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 104
           PHPRTGI+FP G E VM+D+P  AASF    W R+ D VD  +PD
Sbjct: 61  PHPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPD 104

BLAST of CsaV3_7G007950 vs. TAIR10
Match: AT1G73120.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-05
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 0

Query: 54 SSTWVPHPRTGIYFPQGHEWVMKDIP 80
          +S+WVPH  TGIY+P+G E VM+D+P
Sbjct: 68 ASSWVPHEGTGIYYPKGQEKVMQDVP 93

BLAST of CsaV3_7G007950 vs. TrEMBL
Match: tr|A0A0A0K7S0|A0A0A0K7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.7e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 6   MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI 65
           MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI
Sbjct: 1   MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI 60

Query: 66  YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 111
           YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS
Sbjct: 61  YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 105

BLAST of CsaV3_7G007950 vs. TrEMBL
Match: tr|A0A1S3C0N8|A0A1S3C0N8_CUCME (uncharacterized protein LOC103495298 OS=Cucumis melo OX=3656 GN=LOC103495298 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.4e-50
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 0

Query: 1   MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPH 60
           M RTR+PLQANPLFLRKMKQLK QFR LVIDSTSQQ LNKKDDETET+SLPYNSSTWVPH
Sbjct: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 111
           PRTGIYFPQGHEWVMKDIPENAASF RLCWFRDSDDVDDLN + +TSS S
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 110

BLAST of CsaV3_7G007950 vs. TrEMBL
Match: tr|I3SYX4|I3SYX4_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0

Query: 5   RMPLQANPLFLRKMKQLKWQFRGLVID-STSQQALNKKDDETETESLPYNSSTWVPHPRT 64
           R  L  + +FLR  ++ K    G      T+ Q   K + E+  ++    +  W+PHPRT
Sbjct: 4   RSGLAKSNMFLRSCRRAKHAESGTSKRLGTTIQPTAKLETESSRDAKTRGNGCWIPHPRT 63

Query: 65  GIYFPQGHEWVMKDIPENAASFPRLCWFRDS--DDVDDLNPDKD 106
           GIYFP GHEWVM+D+P+ AA+F + CWFR++  D VD+  P  D
Sbjct: 64  GIYFPVGHEWVMEDVPDGAANFGQTCWFRNNAVDAVDNPIPKPD 107

BLAST of CsaV3_7G007950 vs. TrEMBL
Match: tr|A0A200R2X4|A0A200R2X4_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9047g17 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 41  KDDETETESLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDL 100
           KD+         N S W+PHPRTGIY+P+GHEWVM+D+P+ AASF +  W R+++ VD  
Sbjct: 48  KDNXXXXXXXXVNMSWWIPHPRTGIYYPKGHEWVMEDLPDGAASFRQTYWLRNAEGVDKP 107

Query: 101 NPDKDT 107
           +PD ++
Sbjct: 108 SPDANS 113

BLAST of CsaV3_7G007950 vs. TrEMBL
Match: tr|B9GHV7|B9GHV7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G296900v3 PE=4 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 5.9e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 57  WVPHPRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPD 104
           WVPHPRTGIYFP+GHEWVM D+PENAASF +  W R+ D V+   PD
Sbjct: 50  WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPD 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658881.11.7e-58100.00PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus][more]
KGN43861.11.3e-55100.00hypothetical protein Csa_7G071500 [Cucumis sativus][more]
XP_008455025.18.2e-5089.09PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo][more]
XP_022148740.11.5e-3064.00uncharacterized protein LOC111017332 [Momordica charantia][more]
XP_022989019.16.8e-2864.08uncharacterized protein LOC111486209 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G19550.16.3e-1238.10unknown protein[more]
AT1G73120.17.5e-0561.54unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K7S0|A0A0A0K7S0_CUCSA8.7e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071500 PE=4 SV=1[more]
tr|A0A1S3C0N8|A0A1S3C0N8_CUCME5.4e-5089.09uncharacterized protein LOC103495298 OS=Cucumis melo OX=3656 GN=LOC103495298 PE=... [more]
tr|I3SYX4|I3SYX4_LOTJA2.0e-1240.38Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
tr|A0A200R2X4|A0A200R2X4_9MAGN4.5e-1248.48Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9047g17 PE=4 SV=1[more]
tr|B9GHV7|B9GHV7_POPTR5.9e-1268.09Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G296900v3 PE=... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G007950.1CsaV3_7G007950.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 38..71
e-value: 9.3E-5
score: 23.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..54
NoneNo IPR availablePANTHERPTHR35109FAMILY NOT NAMEDcoord: 2..106
NoneNo IPR availablePANTHERPTHR35109:SF1SUBFAMILY NOT NAMEDcoord: 2..106

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G007950Cucumber (Chinese Long) v3cuccucB100
CsaV3_7G007950Cucumber (Chinese Long) v3cuccucB188
CsaV3_7G007950Silver-seed gourdcarcucB0329
CsaV3_7G007950Silver-seed gourdcarcucB0412
CsaV3_7G007950Cucumber (Gy14) v2cgybcucB198
CsaV3_7G007950Cucumber (Gy14) v1cgycucB540
CsaV3_7G007950Cucurbita maxima (Rimu)cmacucB0057
CsaV3_7G007950Cucurbita maxima (Rimu)cmacucB0232
CsaV3_7G007950Cucurbita maxima (Rimu)cmacucB0414
CsaV3_7G007950Cucurbita maxima (Rimu)cmacucB0589
CsaV3_7G007950Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G007950Cucurbita maxima (Rimu)cmacucB0918
CsaV3_7G007950Cucurbita maxima (Rimu)cmacucB0959
CsaV3_7G007950Cucurbita moschata (Rifu)cmocucB0409
CsaV3_7G007950Cucurbita moschata (Rifu)cmocucB0910
CsaV3_7G007950Cucurbita moschata (Rifu)cmocucB0949
CsaV3_7G007950Cucurbita pepo (Zucchini)cpecucB0141
CsaV3_7G007950Cucurbita pepo (Zucchini)cpecucB0582
CsaV3_7G007950Cucurbita pepo (Zucchini)cpecucB0736
CsaV3_7G007950Cucurbita pepo (Zucchini)cpecucB0995
CsaV3_7G007950Wild cucumber (PI 183967)cpicucB123
CsaV3_7G007950Wild cucumber (PI 183967)cpicucB248
CsaV3_7G007950Bottle gourd (USVL1VR-Ls)cuclsiB558
CsaV3_7G007950Bottle gourd (USVL1VR-Ls)cuclsiB573
CsaV3_7G007950Melon (DHL92) v3.5.1cucmeB581
CsaV3_7G007950Melon (DHL92) v3.5.1cucmeB569
CsaV3_7G007950Melon (DHL92) v3.6.1cucmedB555
CsaV3_7G007950Melon (DHL92) v3.6.1cucmedB568
CsaV3_7G007950Watermelon (Charleston Gray)cucwcgB585
CsaV3_7G007950Watermelon (Charleston Gray)cucwcgB601
CsaV3_7G007950Watermelon (97103) v1cucwmB607
CsaV3_7G007950Watermelon (97103) v1cucwmB619
CsaV3_7G007950Watermelon (97103) v2cucwmbB562
CsaV3_7G007950Watermelon (97103) v2cucwmbB563
CsaV3_7G007950Watermelon (97103) v2cucwmbB577
CsaV3_7G007950Wax gourdcucwgoB686
CsaV3_7G007950Wax gourdcucwgoB702
CsaV3_7G007950Wax gourdcucwgoB724