CmaCh11G017070.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G017070.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Genomic DNA, chromosome 3, BAC clone: T31J18
Location	Cma_Chr11 : 11306924 .. 11309135 (+)
Sequence length	656

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGGAAAATTACTTCTTCCAAACCTGCTTGGCTGAGATTGTATGGCAAGGACTTCTGTGCAGGCGAATGCATTGCTTTTTAGGTAATAATCATCTTGTTTTTGTTATGCTTTTGTTTCTTTCTTTTGTTCTTTTAACGGGGTCGGAGTCATGCATGAACCTGCCCTAGAAATGACGAGGGAGAAAGGAGAGGTTTCTCCCCGTTATCTATGTTGGATGATGAAAGTTCCACATCGGCTAATTTAGGAAATGATCATGAGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGAAGCCCAAAGCAAAGCCATGAGAACCACACTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAAGAATCTAAACAGGTCGATAGATAGTAATTACATTCCTCGTTCCGTCATGACCTAGTCTTTGCCTCACTCCACTTTTATATAAAAATAAAAGTATATTATTGTAACAGTCTAAGCCCATTGCTAGCAGTTATAGTCCGGTTTGACCCGTTACGTATTGTCATCCCTCACGATTTTAAAACGCGTATACTAAGGAGAGGTTTCCACACTCTAATAAGAGTGTTTCATTTCCTACTCCAGCCGGTGTGAGATCTCACAATCGCGTATACTAAGGAGAGGTTTCCACACTCTAATAAGAGTGTTTCATTTCCTACTCCAGCCGGTGTGAGATCTCACAATCCACTCCATTTCCACACTCTAATAAGAGTGTTTCATTTCCTACTCCAACCGGTGTGAGATGTCACAATCCACCCCCCTTGGAGTCCCAGCGTCCTTGCTGGCACATAGCTTGGTGTTTGGCACCCACTACTAGCAAATATTATCTGGTTTGACTCGTTACGTATCATCATTAGCCTCACGGTTTTAAAACGCGTCTATTAGGGAGAAGTTTTCACACTCTTATAATATATTTCGTTTTCTACTCCAAGCCATATGAGATCTCACAATCCACCCCCCTTGAAGTCTCAACGTCCTTGCTAGCTCACCGCTTGGTGTCTAGCACCCACTGCTAGCGAATATTATCTGCTTTGACCCGTTACGTATCATCGTTAACCTCACGGTTTTAAAATGCGTTTACTAGGGAGAGGTTTCCACACTCTTATAAGAATGTTTCGTTCCCCACTCCAACCGATGTGAGATCTCACAATCCCCACCCTCTTTAGGATCCTAACGTCCTCATTGGCACACCACTCAGTGTCTGGCACCCACCGCTAACAAATATTGTCCGCTTTAACCTATTATGTATCACCGTCAACCTCACAGTTTTAAAACGTGTCTACTAGAGAGAGATTTTCACACTCTTATAAGAATGTTTCGTTCATTCTCCACTCCAACTGGTGTGGAATCTCACAATCTACCCCTTTAGGATCCCAGCGTCCTCGCTGACACACCGCTCAATGTCTGACACCCAATCTCTAGCATATATTATCCCCTTTCTCACGTTTACTAGGGAGAGGTTTCTACACTGTTATAAGAGCGTTTCGTTTCACACTCCAACCGATGTGAGATCTGACAATCATTAAATATTTGTTACAAAGATATACGAGTTCAAACACGTGTCTCAATCAAGTAAATGAGACAATAATGATCTCTTTTTGCAGGAAAGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAATAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCATCCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGTCGACGACCTAAACCCCGACACTCATCCCTCTCCCGGACCTCGGCTTGCTGCTGTTTTAGGTGCCACCCAGGATTGATCTTGGGGGAAGATGGCTATCAACTTGAGAGTTAGCATAGGTGTTTAAAGTTGGGAGTATGGATGGCCAATCACCAAATTGGCCTAGGAATAATGTAAAGTATGATGGTGTATTGATCACTCACATCTTCCATAATAAAGTGAATAAATAAGTAATCTATCAATTTAGAGGTACATAAATGAACCAGAACTACATCTAGTCGAGATGATCCTTAGGATAAGATAGCTAAGAAAGACTTTAAAAAATTGAAAGTTACTATTTATACCAATAAAGTG

mRNA sequence

CCCGGAAAATTACTTCTTCCAAACCTGCTTGGCTGAGATTGTATGGCAAGGACTTCTGTGCAGGCGAATGCATTGCTTTTTAGGAAAGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAATAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCATCCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGTCGACGACCTAAACCCCGACACTCATCCCTCTCCCGGACCTCGGCTTGCTGCTGTTTTAGGTGCCACCCAGGATTGATCTTGGGGGAAGATGGCTATCAACTTGAGAGTTAGCATAGGTGTTTAAAGTTGGGAGTATGGATGGCCAATCACCAAATTGGCCTAGGAATAATGTAAAGTATGATGGTGTATTGATCACTCACATCTTCCATAATAAAGTGAATAAATAAGTAATCTATCAATTTAGAGGTACATAAATGAACCAGAACTACATCTAGTCGAGATGATCCTTAGGATAAGATAGCTAAGAAAGACTTTAAAAAATTGAAAGTTACTATTTATACCAATAAAGTG

Coding sequence (CDS)

ATGGCAAGGACTTCTGTGCAGGCGAATGCATTGCTTTTTAGGAAAGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAATAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCATCCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGTCGACGACCTAAACCCCGACACTCATCCCTCTCCCGGACCTCGGCTTGCTGCTGTTTTAGGTGCCACCCAGGATTGA

Protein sequence

MARTSVQANALLFRKVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPSPGPRLAAVLGATQD

Homology

[Close]

BLAST of CmaCh11G017070.1 vs. TrEMBL
Match: A0A0A0K7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1


Query: 6   VQANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPHPRTGIYF 65
           +QAN L  RK+KQL+ QF  L   S +++       ETETE L YNSSTWVPHPRTGIYF
Sbjct: 3   LQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYF 62

Query: 66  PQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           PQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Sbjct: 63  PQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 102

[Close]

BLAST of CmaCh11G017070.1 vs. TrEMBL
Match: A0A0S3SMD8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G048400 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-15
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 7  QANALLF---RKVKQLRRQFSSLANSS---HNKEETETEPLSYNSSTWVPHPRTGIYFPQ 66
          ++N LL    ++ K  R +FS  A +S    + E ++T+    +SS WVPHPRTGIYFP+
Sbjct: 8  KSNLLLLGGAKRAKSGRNKFSGTAQASTAESSAEVSKTDRRIEDSSWWVPHPRTGIYFPK 67

Query: 67 GHEWVMKDVPENAASFSPVFWFRDFDGVD 90
          GHEWVM+DVPE+AA  +  FWFR+ DGVD
Sbjct: 68 GHEWVMEDVPEDAARLNQTFWFRNVDGVD 96

[Close]

BLAST of CmaCh11G017070.1 vs. TrEMBL
Match: A0A0L9U0M8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g238200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-15
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 7  QANALLF---RKVKQLRRQFSSLANSS---HNKEETETEPLSYNSSTWVPHPRTGIYFPQ 66
          ++N LL    ++ K  R +FS  A +S    + E ++T+    +SS WVPHPRTGIYFP+
Sbjct: 8  KSNLLLLGGAKRAKSGRNKFSGTAQASTAESSAEVSKTDRRIEDSSWWVPHPRTGIYFPK 67

Query: 67 GHEWVMKDVPENAASFSPVFWFRDFDGVD 90
          GHEWVM+DVPE+AA  +  FWFR+ DGVD
Sbjct: 68 GHEWVMEDVPEDAARLNQTFWFRNVDGVD 96

[Close]

BLAST of CmaCh11G017070.1 vs. TrEMBL
Match: A0A0B0MFA5_GOSAR (Glutamate racemase OS=Gossypium arboreum GN=F383_14699 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1


Query: 11 LLFRKVKQLRRQFSSLANSSH--NKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKD 70
          L+ R+ K++ R  S +A +    NK+    + +  +SS+WVPHP++GIYFP+GHEWVM D
Sbjct: 12 LMLREAKRVERPLSKIAGADREINKKCKSNDDIK-SSSSWVPHPKSGIYFPKGHEWVMDD 71

Query: 71 VPENAASFSPVFWFRDFDGVDDLNPDTH 97
          VP+ AASF   FW R  DGVD      H
Sbjct: 72 VPDRAASFGSSFWVRSVDGVDKPESSAH 98

[Close]

BLAST of CmaCh11G017070.1 vs. TrEMBL
Match: M4T4A6_ARAHY (Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 1  MARTSVQANALLFRKVKQLRRQFSSL----ANSSHNKEETETEPLSY----NSSTWVPHP 60
          MAR  V  + LL R  +  RR  S +     +S H  E     P SY    +S+ WVPHP
Sbjct: 1  MARRGV-TDMLLLRTNRGARRTESRVIKFSGSSQHAAESCGGIPKSYGKIEDSTCWVPHP 60

Query: 61 RTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDD 91
          RTGIYFP+GHEWVM DVPE AASF+  +W R+ DGVD+
Sbjct: 61 RTGIYFPKGHEWVMDDVPEGAASFTQTYWLRNVDGVDN 97

[Close]

BLAST of CmaCh11G017070.1 vs. TAIR10
Match: AT3G19550.1 (AT3G19550.1 unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-15
Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 1


Query: 1   MARTSV-QANALLFRKVKQL--RRQFSSLANSSHNK-----EETETEPLSYNSS--TWVP 60
           M RT + +A  LL R  KQ   R   SS A  S+       E+     L ++    +WVP
Sbjct: 1   MGRTGIAKAPKLLLRSWKQFQGRAGISSKAAKSNPMIVDYFEDISDHNLKFSGEEESWVP 60

Query: 61  HPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPSP 100
           HPRTGI+FP G E VM+DVP  AASF   FW R+ DGVD  +PD H  P
Sbjct: 61  HPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPDLHHLP 109

[Close]

BLAST of CmaCh11G017070.1 vs. NCBI nr
Match: gi|659110055|ref|XP_008455025.1| (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-28
Identity = 68/107 (63.55%), Postives = 80/107 (74.77%), Query Frame = 1


Query: 1   MARTSV--QANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPH 60
           M+RT +  QAN L  RK+KQL+RQF SL   S +++       ETET+ L YNSSTWVPH
Sbjct: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           PRTGIYFPQGHEWVMKD+PENAASFS + WFRD D VDDLN + + S
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTS 107

[Close]

BLAST of CmaCh11G017070.1 vs. NCBI nr
Match: gi|778724901|ref|XP_011658881.1| (PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 1


Query: 3   RTSVQANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPHPRTG 62
           R  +QAN L  RK+KQL+ QF  L   S +++       ETETE L YNSSTWVPHPRTG
Sbjct: 5   RMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTG 64

Query: 63  IYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           IYFPQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Sbjct: 65  IYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 107

[Close]

BLAST of CmaCh11G017070.1 vs. NCBI nr
Match: gi|700188628|gb|KGN43861.1| (hypothetical protein Csa_7G071500 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-27
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1


Query: 6   VQANALLFRKVKQLRRQFSSLANSSHNKE-------ETETEPLSYNSSTWVPHPRTGIYF 65
           +QAN L  RK+KQL+ QF  L   S +++       ETETE L YNSSTWVPHPRTGIYF
Sbjct: 3   LQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGIYF 62

Query: 66  PQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 99
           PQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Sbjct: 63  PQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTS 102

[Close]

BLAST of CmaCh11G017070.1 vs. NCBI nr
Match: gi|743858129|ref|XP_011030368.1| (PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica])

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 48 WVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDT 96
          WVPHPRTGIYFP+GHEWVM DVPENAASFS  +W R+ DGV+   PDT
Sbjct: 52 WVPHPRTGIYFPKGHEWVMDDVPENAASFSQTYWLRNVDGVEKPGPDT 99

[Close]

BLAST of CmaCh11G017070.1 vs. NCBI nr
Match: gi|920693007|gb|KOM36232.1| (hypothetical protein LR48_Vigan02g238200 [Vigna angularis])

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-15
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 7  QANALLF---RKVKQLRRQFSSLANSS---HNKEETETEPLSYNSSTWVPHPRTGIYFPQ 66
          ++N LL    ++ K  R +FS  A +S    + E ++T+    +SS WVPHPRTGIYFP+
Sbjct: 8  KSNLLLLGGAKRAKSGRNKFSGTAQASTAESSAEVSKTDRRIEDSSWWVPHPRTGIYFPK 67

Query: 67 GHEWVMKDVPENAASFSPVFWFRDFDGVD 90
          GHEWVM+DVPE+AA  +  FWFR+ DGVD
Sbjct: 68 GHEWVMEDVPEDAARLNQTFWFRNVDGVD 96

The following BLAST results are available for this feature:

BLAST of CmaCh11G017070.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G017070.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S0_CUCSA	1.2e-27	65.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071500 PE=4 SV=1	[more]
A0A0S3SMD8_PHAAN	5.3e-15	50.56	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G048400 PE=...	[more]
A0A0L9U0M8_PHAAN	5.3e-15	50.56	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g238200 PE=4 SV=1	[more]
A0A0B0MFA5_GOSAR	2.6e-14	46.59	Glutamate racemase OS=Gossypium arboreum GN=F383_14699 PE=4 SV=1	[more]
M4T4A6_ARAHY	2.6e-14	50.00	Uncharacterized protein OS=Arachis hypogaea PE=2 SV=1	[more]

BLAST of CmaCh11G017070.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19550.1	4.7e-15	44.95	unknown protein	[more]

BLAST of CmaCh11G017070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110055\|ref\|XP_008455025.1\|	3.5e-28	63.55	PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo]	[more]
gi\|778724901\|ref\|XP_011658881.1\|	1.0e-27	64.08	PREDICTED: uncharacterized protein LOC105436102 [Cucumis sativus]	[more]
gi\|700188628\|gb\|KGN43861.1\|	1.7e-27	65.00	hypothetical protein Csa_7G071500 [Cucumis sativus]	[more]
gi\|743858129\|ref\|XP_011030368.1\|	5.8e-15	75.00	PREDICTED: uncharacterized protein LOC105129833 [Populus euphratica]	[more]
gi\|920693007\|gb\|KOM36232.1\|	7.6e-15	50.56	hypothetical protein LR48_Vigan02g238200 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004926	LEA_3

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G017070	CmaCh11G017070	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G017070.1	CmaCh11G017070.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G017070.1.exon.2	CmaCh11G017070.1.exon.2	exon
CmaCh11G017070.1.exon.1	CmaCh11G017070.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G017070.1.five_prime_UTR.1	CmaCh11G017070.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G017070.1.CDS.1	CmaCh11G017070.1.CDS.1	CDS
CmaCh11G017070.1.CDS.2	CmaCh11G017070.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G017070.1.three_prime_UTR.1	CmaCh11G017070.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA5-type	PFAM	PF03242	LEA_3	coord: 27..62 score: 2.
None	No IPR available	PANTHER	PTHR35109	FAMILY NOT NAMED	coord: 1..106 score: 8.4