CmaCh11G010720 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G010720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	30S ribosomal protein S31, mitochondrial
Location	Cma_Chr11 : 5879542 .. 5879802 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACTCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAAACGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACTCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAAACGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACTCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAAACGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI

Homology

[Close]

BLAST of CmaCh11G010720 vs. Swiss-Prot
Match: RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.9e-24
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 2  MQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKIFKG 61
          MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK FKG
Sbjct: 4  MQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKG 63

Query: 62 SYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          SYGNSR KK+K I+RIKDK E+P STPWPLPFKLI
Sbjct: 64 SYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of CmaCh11G010720 vs. Swiss-Prot
Match: RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-19
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 34 ILCGRGDKKTKKGKIFKGSYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          + CGRGDKKTK+GK FKGSYGN+RPK+EKKI+RIKD+ EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]

BLAST of CmaCh11G010720 vs. TrEMBL
Match: A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.5e-36
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60
          M QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGN+RPKK
Sbjct: 3  MAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 87
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CmaCh11G010720 vs. TrEMBL
Match: F6I185_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-25
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60
          MMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGN+RPKK
Sbjct: 3  MMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 87
          EKKI+RIKDK EVP S PWPLPFKLI
Sbjct: 63 EKKIERIKDKVEVPRSIPWPLPFKLI 88

[Close]

BLAST of CmaCh11G010720 vs. TrEMBL
Match: A5AQK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-25
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60
          MMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGN+RPKK
Sbjct: 3  MMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 87
          EKKI+RIKDK EVP S PWPLPFKLI
Sbjct: 63 EKKIERIKDKVEVPRSXPWPLPFKLI 88

[Close]

BLAST of CmaCh11G010720 vs. TrEMBL
Match: M5VXZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.3e-25
Identity = 64/97 (65.98%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGKIF 60
          MMQWCGAVAR V+  E+R+   T+S      V           PI+CGRGDKKTKKGK F
Sbjct: 3  MMQWCGAVARRVLMTEQRALFTTTSSPSSSAVAAAAIMSSIGAPIVCGRGDKKTKKGKRF 62

Query: 61 KGSYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          KGSYGN+RPKKEKKI+RIKDK EVP STPWPLPFKLI
Sbjct: 63 KGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

[Close]

BLAST of CmaCh11G010720 vs. TrEMBL
Match: B9HRF4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s12760g PE=4 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 7.4e-25
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 3  QWCGAVARGVMAAERRSPSLTSSMAVEG-LVPILCGRGDKKTKKGKIFKGSYGNSRPKKE 62
          +WCGAVAR  MA +R +   TSS++    + PILCGRGDKKTK+GK FKG+YGN+RPKKE
Sbjct: 5  EWCGAVARRAMAGQRSAVFSTSSISSGAEMAPILCGRGDKKTKRGKRFKGTYGNARPKKE 64

Query: 63 KKIQRIKDKNEVPSSTPWPLPFKLI 87
          KKI+RIKDK EVP STPWPLPFKLI
Sbjct: 65 KKIERIKDKVEVPRSTPWPLPFKLI 89

[Close]

BLAST of CmaCh11G010720 vs. TAIR10
Match: AT2G21290.1 (AT2G21290.1 unknown protein)

HSP 1 Score: 110.9 bits (276), Expect = 3.9e-25
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 2  MQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKIFKG 61
          MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK FKG
Sbjct: 4  MQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKG 63

Query: 62 SYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          SYGNSR KK+K I+RIKDK E+P STPWPLPFKLI
Sbjct: 64 SYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of CmaCh11G010720 vs. NCBI nr
Match: gi|659094414|ref|XP_008448047.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 4.6e-36
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60
          M QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGN+RPKK
Sbjct: 3  MAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 87
          EKKI+RIKDK EVP STPWPLPFKLI
Sbjct: 63 EKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of CmaCh11G010720 vs. NCBI nr
Match: gi|778722736|ref|XP_011658557.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-36
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60
          M QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGN+RPKK
Sbjct: 3  MAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 87
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CmaCh11G010720 vs. NCBI nr
Match: gi|743793489|ref|XP_011047286.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Populus euphratica])

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-26
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-PILCGRGDKKTKKGKIFKGSYGNSRPK 60
          +MQWCGAVAR  M  +R +   TSS++   L+ PILCGRGDKKTKKGK FKG+YGN+RPK
Sbjct: 4  VMQWCGAVARRAMVGQRSAVFSTSSVSSGALMAPILCGRGDKKTKKGKRFKGTYGNARPK 63

Query: 61 KEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          KEKKI+RIKDK EVP STPWPLPFKLI
Sbjct: 64 KEKKIERIKDKVEVPRSTPWPLPFKLI 90

[Close]

BLAST of CmaCh11G010720 vs. NCBI nr
Match: gi|147775816|emb|CAN75923.1| (hypothetical protein VITISV_029514 [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-25
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60
          MMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGN+RPKK
Sbjct: 3  MMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 87
          EKKI+RIKDK EVP S PWPLPFKLI
Sbjct: 63 EKKIERIKDKVEVPRSXPWPLPFKLI 88

[Close]

BLAST of CmaCh11G010720 vs. NCBI nr
Match: gi|645262601|ref|XP_008236836.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume])

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-25
Identity = 64/97 (65.98%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGKIF 60
          MMQWCGAVAR V+  E+R+   T+S +    V           PI+CGRGDKKTKKGK F
Sbjct: 3  MMQWCGAVARRVLMTEQRALFTTTSSSSSSAVAAAARMSSIGAPIVCGRGDKKTKKGKRF 62

Query: 61 KGSYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          KGSYGN+RPKKEKKI+RIKDK EVP STPWPLPFKLI
Sbjct: 63 KGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

The following BLAST results are available for this feature:

BLAST of CmaCh11G010720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT31_ARATH	6.9e-24	61.05	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE...	[more]
RT31_ORYSJ	6.7e-19	81.13	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09...	[more]

BLAST of CmaCh11G010720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K141_CUCSA	5.5e-36	91.86	30S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4...	[more]
F6I185_VITVI	2.5e-25	70.93	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=...	[more]
A5AQK5_VITVI	2.5e-25	70.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1	[more]
M5VXZ0_PRUPE	4.3e-25	65.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1	[more]
B9HRF4_POPTR	7.4e-25	70.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s12760g PE=4 SV=2	[more]

BLAST of CmaCh11G010720 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21290.1	3.9e-25	61.05	unknown protein	[more]

BLAST of CmaCh11G010720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094414\|ref\|XP_008448047.1\|	4.6e-36	90.70	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo]	[more]
gi\|778722736\|ref\|XP_011658557.1\|	7.8e-36	91.86	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]	[more]
gi\|743793489\|ref\|XP_011047286.1\|	7.4e-26	72.41	PREDICTED: 30S ribosomal protein S31, mitochondrial [Populus euphratica]	[more]
gi\|147775816\|emb\|CAN75923.1\|	3.7e-25	70.93	hypothetical protein VITISV_029514 [Vitis vinifera]	[more]
gi\|645262601\|ref\|XP_008236836.1\|	3.7e-25	65.98	PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G010720.1	CmaCh11G010720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34550	FAMILY NOT NAMED	coord: 1..86 score: 2.4
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..86 score: 2.4
None	No IPR available	PFAM	PF17067	RPS31	coord: 30..78 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G010720	Cucsa.377960	Cucumber (Gy14) v1	cgycmaB1037
CmaCh11G010720	Cla015884	Watermelon (97103) v1	cmawmB123
CmaCh11G010720	Csa7G006280	Cucumber (Chinese Long) v2	cmacuB152
CmaCh11G010720	MELO3C013419	Melon (DHL92) v3.5.1	cmameB093
CmaCh11G010720	ClCG02G004560	Watermelon (Charleston Gray)	cmawcgB098
CmaCh11G010720	CSPI07G00400	Wild cucumber (PI 183967)	cmacpiB150
CmaCh11G010720	CmoCh19G007050	Cucurbita moschata (Rifu)	cmacmoB146
CmaCh11G010720	CmoCh11G010950	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G010720	Lsi11G011400	Bottle gourd (USVL1VR-Ls)	cmalsiB103
CmaCh11G010720	Cp4.1LG15g05630	Cucurbita pepo (Zucchini)	cmacpeB119
CmaCh11G010720	Cp4.1LG04g01190	Cucurbita pepo (Zucchini)	cmacpeB147
CmaCh11G010720	MELO3C013419.2	Melon (DHL92) v3.6.1	cmamedB101
CmaCh11G010720	CsaV3_7G000400	Cucumber (Chinese Long) v3	cmacucB0177
CmaCh11G010720	Cla97C02G031520	Watermelon (97103) v2	cmawmbB102
CmaCh11G010720	CsGy7G000340	Cucumber (Gy14) v2	cgybcmaB900
CmaCh11G010720	Carg19383	Silver-seed gourd	carcmaB0438
CmaCh11G010720	Carg22932	Silver-seed gourd	carcmaB0291

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G010720	CmaCh19G006940	Cucurbita maxima (Rimu)	cmacmaB152

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G010720	Cucurbita maxima (Rimu)	cmacmaB160
CmaCh11G010720	Cucurbita moschata (Rifu)	cmacmoB153
CmaCh11G010720	Wild cucumber (PI 183967)	cmacpiB120
CmaCh11G010720	Cucumber (Chinese Long) v2	cmacuB123
CmaCh11G010720	Watermelon (Charleston Gray)	cmawcgB139
CmaCh11G010720	Watermelon (97103) v1	cmawmB091
CmaCh11G010720	Cucurbita pepo (Zucchini)	cmacpeB162
CmaCh11G010720	Bottle gourd (USVL1VR-Ls)	cmalsiB152
CmaCh11G010720	Cucumber (Gy14) v2	cgybcmaB167
CmaCh11G010720	Melon (DHL92) v3.6.1	cmamedB133
CmaCh11G010720	Cucumber (Chinese Long) v3	cmacucB0139
CmaCh11G010720	Watermelon (97103) v2	cmawmbB146
CmaCh11G010720	Wax gourd	cmawgoB0119
CmaCh11G010720	Wax gourd	cmawgoB0130