Carg19383 (gene) Silver-seed gourd

NameCarg19383
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description30S ribosomal protein S31, mitochondrial
LocationCucurbita_argyrosperma_scaffold_096 : 282996 .. 283256 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCAGTGGTGCGGCGCGTTAGCTAAGCGAGTGATGGCGGCGGAGCGAGGGTCTCCTTCACTGACGTCGTCCATGGCGGTGGAAGGACTGGTGCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCTAGGCCGAAGAAGGAGAAGAAGATTCAGCGAATTAAGGATAAAATCGAGGTTCCTAGTTCTACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGCAGTGGTGCGGCGCGTTAGCTAAGCGAGTGATGGCGGCGGAGCGAGGGTCTCCTTCACTGACGTCGTCCATGGCGGTGGAAGGACTGGTGCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCTAGGCCGAAGAAGGAGAAGAAGATTCAGCGAATTAAGGATAAAATCGAGGTTCCTAGTTCTACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGCAGTGGTGCGGCGCGTTAGCTAAGCGAGTGATGGCGGCGGAGCGAGGGTCTCCTTCACTGACGTCGTCCATGGCGGTGGAAGGACTGGTGCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCTAGGCCGAAGAAGGAGAAGAAGATTCAGCGAATTAAGGATAAAATCGAGGTTCCTAGTTCTACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI
BLAST of Carg19383 vs. NCBI nr
Match: XP_023554667.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60
          MAQWCGALAKRVMAAERGSP LTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERGSPLLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 87
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

BLAST of Carg19383 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 2.3e-39
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60
          MAQWCGALAKRVMAAER SPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 87
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

BLAST of Carg19383 vs. NCBI nr
Match: XP_022969451.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-38
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60
          MAQWCGALAKRVMAAER SPS TSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSPTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 87
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

BLAST of Carg19383 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-37
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60
          M QWCGA+A+ VMAAER SPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 3  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 87
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88

BLAST of Carg19383 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima])

HSP 1 Score: 159.8 bits (403), Expect = 4.0e-36
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60
          M QWCGA+A+ VMAAER SPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 87
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

BLAST of Carg19383 vs. TAIR10
Match: AT2G21290.1 (unknown protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 3  QWCGALAKRVMAAERGSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKIFKGS 62
          QWCGA+ +R+M  +R S +L  S     L P           LCGRGDKKTKKGK FKGS
Sbjct: 5  QWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKGS 64

Query: 63 YGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 87
          YGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 65 YGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of Carg19383 vs. TAIR10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4)

HSP 1 Score: 41.2 bits (95), Expect = 3.8e-04
Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 0

Query: 34 ILCGRGDKKTKKGKIFKGSYGNARPK 60
          + CGRGD+KT KGK F  S+GNARP+
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPR 78

BLAST of Carg19383 vs. Swiss-Prot
Match: sp|Q9SJU8|RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-24
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 3  QWCGALAKRVMAAERGSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKIFKGS 62
          QWCGA+ +R+M  +R S +L  S     L P           LCGRGDKKTKKGK FKGS
Sbjct: 5  QWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKGS 64

Query: 63 YGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 87
          YGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 65 YGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of Carg19383 vs. Swiss-Prot
Match: sp|P47909|RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 34 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 87
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A1S3BI88|A0A1S3BI88_CUCME (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-35
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60
          MAQWCGA+A+ V+AAER SPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARPKK
Sbjct: 3  MAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 87
          EKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 63 EKKIERIKDKIEVPRSTPWPLPFKLI 88

BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A0A0K141|A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-35
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60
          MAQW GA+A+ VMAAER SPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARPKK
Sbjct: 3  MAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKK 62

Query: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 87
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88

BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.8e-27
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAER-GSPSL---TSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNA 60
          M QWCGA+A+RVM   R  S SL   TSS    G+VPI+CGRGDKKTKKGK FKGSYGNA
Sbjct: 3  MMQWCGAVARRVMMTHRPASSSLSTPTSSSMGGGVVPIVCGRGDKKTKKGKRFKGSYGNA 62

Query: 61 RPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 87
          RPKKEKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 63 RPKKEKKIERIKDRVEVPRSTPWPLPFKLI 92

BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A1R3HVM9|A0A1R3HVM9_COCAP (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210143 GN=CCACVL1_16756 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTS---SMAVEGLVPILCGRGDKKTKKGKIFKGSYGNAR 60
          M QWCGA+A+RVM  +R  PSLTS   S A     PILCGRGDKKTKKGK FKGSYGNAR
Sbjct: 3  MMQWCGAVARRVMTGQR--PSLTSASPSGAAAMGAPILCGRGDKKTKKGKRFKGSYGNAR 62

Query: 61 PKKEKKIQRIKDKIEVPSSTPWPLPFKLI 87
          PKKEK I+RIKDK+EVP STPWPLPFKLI
Sbjct: 63 PKKEKMIERIKDKVEVPRSTPWPLPFKLI 89

BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A1R3HYV5|A0A1R3HYV5_9ROSI (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus olitorius OX=93759 GN=COLO4_26047 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 1  MAQWCGALAKRVMAAERGSPSLTS---SMAVEGLVPILCGRGDKKTKKGKIFKGSYGNAR 60
          M QWCGA+A+RVM  +R  PSLTS   S A     PILCGRGDKKTKKGK FKGSYGNAR
Sbjct: 3  MMQWCGAVARRVMTGQR--PSLTSASPSGAAAMGAPILCGRGDKKTKKGKRFKGSYGNAR 62

Query: 61 PKKEKKIQRIKDKIEVPSSTPWPLPFKLI 87
          PKKEK I+RIKDK+EVP STPWPLPFKLI
Sbjct: 63 PKKEKMIERIKDKVEVPRSTPWPLPFKLI 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023554667.11.3e-3998.8430S ribosomal protein S31, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
XP_022952601.12.3e-3998.8430S ribosomal protein S31, mitochondrial-like [Cucurbita moschata][more]
XP_022969451.11.5e-3897.6730S ribosomal protein S31, mitochondrial-like [Cucurbita maxima][more]
XP_022933003.12.8e-3794.1930S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30... [more]
XP_022971575.14.0e-3691.8630S ribosomal protein S31, mitochondrial [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G21290.11.3e-2559.57unknown protein[more]
AT2G38140.13.8e-0465.38plastid-specific ribosomal protein 4[more]
Match NameE-valueIdentityDescription
sp|Q9SJU8|RT31_ARATH2.4e-2459.5730S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g... [more]
sp|P47909|RT31_ORYSJ2.8e-2083.0230S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BI88|A0A1S3BI88_CUCME1.7e-3589.5330S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344... [more]
tr|A0A0A0K141|A0A0A0K141_CUCSA2.9e-3590.7030S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006... [more]
tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY3.8e-2774.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1[more]
tr|A0A1R3HVM9|A0A1R3HVM9_COCAP1.5e-2675.28Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210... [more]
tr|A0A1R3HYV5|A0A1R3HYV5_9ROSI1.5e-2675.28Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus olitorius OX=9375... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR030826Ribo_THX
IPR031414Thx
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19383-RACarg19383-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03141430S ribosomal protein ThxPFAMPF17070Thxcoord: 37..62
e-value: 2.4E-6
score: 27.3
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 37..60
e-value: 1.7E-12
score: 45.1
NoneNo IPR availablePFAMPF17067RPS31coord: 30..78
e-value: 1.6E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR34550FAMILY NOT NAMEDcoord: 2..86
NoneNo IPR availablePANTHERPTHR34550:SF230S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 2..86

The following gene(s) are paralogous to this gene:

None