Carg19383 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGCAGTGGTGCGGCGCGTTAGCTAAGCGAGTGATGGCGGCGGAGCGAGGGTCTCCTTCACTGACGTCGTCCATGGCGGTGGAAGGACTGGTGCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCTAGGCCGAAGAAGGAGAAGAAGATTCAGCGAATTAAGGATAAAATCGAGGTTCCTAGTTCTACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA ATGGCGCAGTGGTGCGGCGCGTTAGCTAAGCGAGTGATGGCGGCGGAGCGAGGGTCTCCTTCACTGACGTCGTCCATGGCGGTGGAAGGACTGGTGCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCTAGGCCGAAGAAGGAGAAGAAGATTCAGCGAATTAAGGATAAAATCGAGGTTCCTAGTTCTACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA ATGGCGCAGTGGTGCGGCGCGTTAGCTAAGCGAGTGATGGCGGCGGAGCGAGGGTCTCCTTCACTGACGTCGTCCATGGCGGTGGAAGGACTGGTGCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCTAGGCCGAAGAAGGAGAAGAAGATTCAGCGAATTAAGGATAAAATCGAGGTTCCTAGTTCTACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA MAQWCGALAKRVMAAERGSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI
BLAST of Carg19383 vs. NCBI nr
Match: XP_023554667.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg19383 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 170.6 bits (431), Expect = 2.3e-39 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg19383 vs. NCBI nr
Match: XP_022969451.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 167.9 bits (424), Expect = 1.5e-38 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0
BLAST of Carg19383 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 163.7 bits (413), Expect = 2.8e-37 Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0
BLAST of Carg19383 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima]) HSP 1 Score: 159.8 bits (403), Expect = 4.0e-36 Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Carg19383 vs. TAIR10
Match: AT2G21290.1 (unknown protein) HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25 Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 0
BLAST of Carg19383 vs. TAIR10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4) HSP 1 Score: 41.2 bits (95), Expect = 3.8e-04 Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 0
BLAST of Carg19383 vs. Swiss-Prot
Match: sp|Q9SJU8|RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 2.4e-24 Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 0
BLAST of Carg19383 vs. Swiss-Prot
Match: sp|P47909|RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2) HSP 1 Score: 99.0 bits (245), Expect = 2.8e-20 Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0
BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A1S3BI88|A0A1S3BI88_CUCME (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 1.7e-35 Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A0A0K141|A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.9e-35 Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 3.8e-27 Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 0
BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A1R3HVM9|A0A1R3HVM9_COCAP (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210143 GN=CCACVL1_16756 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26 Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0
BLAST of Carg19383 vs. TrEMBL
Match: tr|A0A1R3HYV5|A0A1R3HYV5_9ROSI (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus olitorius OX=93759 GN=COLO4_26047 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26 Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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