Cp4.1LG04g01190 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG04g01190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description30S ribosomal protein S31, mitochondrial
LocationCp4.1LG04 : 898708 .. 898974 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGATCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGATCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGATCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI
BLAST of Cp4.1LG04g01190 vs. Swiss-Prot
Match: RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-25
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of Cp4.1LG04g01190 vs. Swiss-Prot
Match: RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 1

Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: A5AQK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSXPWPLPFKLI 88

BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: F6I185_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSIPWPLPFKLI 88

BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: M5VXZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGK 60
          MAMMQWCGAVAR V+  E+R+   T+S      V           PI+CGRGDKKTKKGK
Sbjct: 1  MAMMQWCGAVARRVLMTEQRALFTTTSSPSSSAVAAAAIMSSIGAPIVCGRGDKKTKKGK 60

Query: 61 IFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
           FKGSYGNARPKKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 RFKGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: A0A061DYK3_THECC (30S ribosomal protein S31 OS=Theobroma cacao GN=TCM_006777 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQ CGAVAR VM  +R   +  S   V    PILCGRGDKKT+KGK FKGSYGNARP
Sbjct: 1  MAMMQLCGAVARRVMTLQRPPLTSASMSGVAAGAPILCGRGDKKTRKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEK I+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKMIERIKDKVEVPRSTPWPLPFKLI 88

BLAST of Cp4.1LG04g01190 vs. TAIR10
Match: AT2G21290.1 (AT2G21290.1 unknown protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-26
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|659094414|ref|XP_008448047.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|778722736|ref|XP_011658557.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.0e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|147775816|emb|CAN75923.1| (hypothetical protein VITISV_029514 [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSXPWPLPFKLI 88

BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|645262601|ref|XP_008236836.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGK 60
          MAMMQWCGAVAR V+  E+R+   T+S +    V           PI+CGRGDKKTKKGK
Sbjct: 1  MAMMQWCGAVARRVLMTEQRALFTTTSSSSSSAVAAAARMSSIGAPIVCGRGDKKTKKGK 60

Query: 61 IFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
           FKGSYGNARPKKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 RFKGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|225427776|ref|XP_002268532.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSIPWPLPFKLI 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RT31_ARATH4.9e-2560.2030S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE... [more]
RT31_ORYSJ3.6e-2083.0230S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09... [more]
Match NameE-valueIdentityDescription
A0A0A0K141_CUCSA3.5e-3894.3230S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4... [more]
A5AQK5_VITVI2.1e-2772.73Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1[more]
F6I185_VITVI2.1e-2772.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=... [more]
M5VXZ0_PRUPE3.6e-2767.68Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1[more]
A0A061DYK3_THECC3.1e-2672.7330S ribosomal protein S31 OS=Theobroma cacao GN=TCM_006777 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G21290.12.7e-2660.20 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659094414|ref|XP_008448047.1|2.9e-3893.18PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo][more]
gi|778722736|ref|XP_011658557.1|5.0e-3894.32PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus][more]
gi|147775816|emb|CAN75923.1|3.1e-2772.73hypothetical protein VITISV_029514 [Vitis vinifera][more]
gi|645262601|ref|XP_008236836.1|3.1e-2767.68PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume][more]
gi|225427776|ref|XP_002268532.1|3.1e-2772.73PREDICTED: 30S ribosomal protein S31, mitochondrial [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g01190.1Cp4.1LG04g01190.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34550FAMILY NOT NAMEDcoord: 1..88
score: 3.5
NoneNo IPR availablePANTHERPTHR34550:SF230S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..88
score: 3.5
NoneNo IPR availablePFAMPF17067RPS31coord: 32..80
score: 1.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g01190Cp4.1LG15g05630Cucurbita pepo (Zucchini)cpecpeB270
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g01190Cucurbita pepo (Zucchini)cpecpeB496
Cp4.1LG04g01190Cucurbita pepo (Zucchini)cpecpeB501
Cp4.1LG04g01190Cucurbita moschata (Rifu)cmocpeB591
Cp4.1LG04g01190Bottle gourd (USVL1VR-Ls)cpelsiB575
Cp4.1LG04g01190Cucumber (Gy14) v2cgybcpeB239
Cp4.1LG04g01190Melon (DHL92) v3.6.1cpemedB747
Cp4.1LG04g01190Cucumber (Chinese Long) v3cpecucB0836
Cp4.1LG04g01190Wax gourdcpewgoB0849
Cp4.1LG04g01190Wax gourdcpewgoB0858
Cp4.1LG04g01190Wax gourdcpewgoB0861