CmoCh11G010950 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G010950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S31, mitochondrial
Location	Cmo_Chr11 : 6119038 .. 6119304 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Homology

[Close]

BLAST of CmoCh11G010950 vs. Swiss-Prot
Match: RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-25
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of CmoCh11G010950 vs. Swiss-Prot
Match: RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]

BLAST of CmoCh11G010950 vs. TrEMBL
Match: A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CmoCh11G010950 vs. TrEMBL
Match: A5AQK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSXPWPLPFKLI 88

[Close]

BLAST of CmoCh11G010950 vs. TrEMBL
Match: F6I185_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSIPWPLPFKLI 88

[Close]

BLAST of CmoCh11G010950 vs. TrEMBL
Match: M5VXZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGK 60
          MAMMQWCGAVAR V+  E+R+   T+S      V           PI+CGRGDKKTKKGK
Sbjct: 1  MAMMQWCGAVARRVLMTEQRALFTTTSSPSSSAVAAAAIMSSIGAPIVCGRGDKKTKKGK 60

Query: 61 IFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
           FKGSYGNARPKKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 RFKGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

[Close]

BLAST of CmoCh11G010950 vs. TrEMBL
Match: A0A061DYK3_THECC (30S ribosomal protein S31 OS=Theobroma cacao GN=TCM_006777 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQ CGAVAR VM  +R   +  S   V    PILCGRGDKKT+KGK FKGSYGNARP
Sbjct: 1  MAMMQLCGAVARRVMTLQRPPLTSASMSGVAAGAPILCGRGDKKTRKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEK I+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKMIERIKDKVEVPRSTPWPLPFKLI 88

[Close]

BLAST of CmoCh11G010950 vs. TAIR10
Match: AT2G21290.1 (AT2G21290.1 unknown protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-26
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of CmoCh11G010950 vs. NCBI nr
Match: gi|659094414|ref|XP_008448047.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of CmoCh11G010950 vs. NCBI nr
Match: gi|778722736|ref|XP_011658557.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.0e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CmoCh11G010950 vs. NCBI nr
Match: gi|147775816|emb|CAN75923.1| (hypothetical protein VITISV_029514 [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSXPWPLPFKLI 88

[Close]

BLAST of CmoCh11G010950 vs. NCBI nr
Match: gi|645262601|ref|XP_008236836.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGK 60
          MAMMQWCGAVAR V+  E+R+   T+S +    V           PI+CGRGDKKTKKGK
Sbjct: 1  MAMMQWCGAVARRVLMTEQRALFTTTSSSSSSAVAAAARMSSIGAPIVCGRGDKKTKKGK 60

Query: 61 IFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
           FKGSYGNARPKKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 RFKGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

[Close]

BLAST of CmoCh11G010950 vs. NCBI nr
Match: gi|225427776|ref|XP_002268532.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSIPWPLPFKLI 88

The following BLAST results are available for this feature:

BLAST of CmoCh11G010950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT31_ARATH	4.9e-25	60.20	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE...	[more]
RT31_ORYSJ	3.6e-20	83.02	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09...	[more]

BLAST of CmoCh11G010950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K141_CUCSA	3.5e-38	94.32	30S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4...	[more]
A5AQK5_VITVI	2.1e-27	72.73	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1	[more]
F6I185_VITVI	2.1e-27	72.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=...	[more]
M5VXZ0_PRUPE	3.6e-27	67.68	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1	[more]
A0A061DYK3_THECC	3.1e-26	72.73	30S ribosomal protein S31 OS=Theobroma cacao GN=TCM_006777 PE=4 SV=1	[more]

BLAST of CmoCh11G010950 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21290.1	2.7e-26	60.20	unknown protein	[more]

BLAST of CmoCh11G010950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094414\|ref\|XP_008448047.1\|	2.9e-38	93.18	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo]	[more]
gi\|778722736\|ref\|XP_011658557.1\|	5.0e-38	94.32	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]	[more]
gi\|147775816\|emb\|CAN75923.1\|	3.1e-27	72.73	hypothetical protein VITISV_029514 [Vitis vinifera]	[more]
gi\|645262601\|ref\|XP_008236836.1\|	3.1e-27	67.68	PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume]	[more]
gi\|225427776\|ref\|XP_002268532.1\|	3.1e-27	72.73	PREDICTED: 30S ribosomal protein S31, mitochondrial [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G010950.1	CmoCh11G010950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34550	FAMILY NOT NAMED	coord: 1..88 score: 3.5
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..88 score: 3.5
None	No IPR available	PFAM	PF17067	RPS31	coord: 32..80 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G010950	Cucsa.377960	Cucumber (Gy14) v1	cgycmoB1036
CmoCh11G010950	CmaCh11G010720	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G010950	CmaCh19G006940	Cucurbita maxima (Rimu)	cmacmoB495
CmoCh11G010950	Cla015884	Watermelon (97103) v1	cmowmB111
CmoCh11G010950	Csa7G006280	Cucumber (Chinese Long) v2	cmocuB139
CmoCh11G010950	MELO3C013419	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G010950	ClCG02G004560	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G010950	CSPI07G00400	Wild cucumber (PI 183967)	cmocpiB138
CmoCh11G010950	Lsi11G011400	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G010950	Cp4.1LG15g05630	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G010950	Cp4.1LG04g01190	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G010950	MELO3C013419.2	Melon (DHL92) v3.6.1	cmomedB092
CmoCh11G010950	CsaV3_7G000400	Cucumber (Chinese Long) v3	cmocucB0161
CmoCh11G010950	Cla97C02G031520	Watermelon (97103) v2	cmowmbB089
CmoCh11G010950	CsGy7G000340	Cucumber (Gy14) v2	cgybcmoB882
CmoCh11G010950	Carg19383	Silver-seed gourd	carcmoB0431
CmoCh11G010950	Carg22932	Silver-seed gourd	carcmoB0297

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G010950	CmoCh19G007050	Cucurbita moschata (Rifu)	cmocmoB111

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G010950	Watermelon (97103) v2	cmowmbB129
CmoCh11G010950	Wax gourd	cmowgoB0114
CmoCh11G010950	Wax gourd	cmowgoB0125
CmoCh11G010950	Cucurbita moschata (Rifu)	cmocmoB082
CmoCh11G010950	Cucurbita moschata (Rifu)	cmocmoB120
CmoCh11G010950	Melon (DHL92) v3.5.1	cmomeB115
CmoCh11G010950	Watermelon (Charleston Gray)	cmowcgB124
CmoCh11G010950	Watermelon (97103) v1	cmowmB082
CmoCh11G010950	Cucurbita pepo (Zucchini)	cmocpeB139
CmoCh11G010950	Bottle gourd (USVL1VR-Ls)	cmolsiB141
CmoCh11G010950	Cucumber (Gy14) v2	cgybcmoB159
CmoCh11G010950	Melon (DHL92) v3.6.1	cmomedB124
CmoCh11G010950	Cucumber (Chinese Long) v3	cmocucB0124