Cla97C02G031520 (gene) Watermelon (97103) v2

NameCla97C02G031520
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description30S ribosomal protein S31
LocationCla97Chr02 : 4386648 .. 4386914 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGCAGTGGTGCGGCGCTGTGGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCAATGGTGGTCGAAGGACTGGTGCCAATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATTGAGGTTCCTAGTTCCACTCGTTGGCCTCTTCCTTTCAAGCTTATCTGA

mRNA sequence

ATGGCGATGGCGCAGTGGTGCGGCGCTGTGGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCAATGGTGGTCGAAGGACTGGTGCCAATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATTGAGGTTCCTAGTTCCACTCGTTGGCCTCTTCCTTTCAAGCTTATCTGA

Coding sequence (CDS)

ATGGCGATGGCGCAGTGGTGCGGCGCTGTGGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCAATGGTGGTCGAAGGACTGGTGCCAATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATTGAGGTTCCTAGTTCCACTCGTTGGCCTCTTCCTTTCAAGCTTATCTGA

Protein sequence

MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTRWPLPFKLI
BLAST of Cla97C02G031520 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.4 bits (420), Expect = 4.4e-38
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          KKEKKIQRIKDKIEVPSST WPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

BLAST of Cla97C02G031520 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 7.5e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQWCGAVARGV+AAERRSPSLTSSM VEGLVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          KKEKKI+RIKDKIEVP ST WPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

BLAST of Cla97C02G031520 vs. NCBI nr
Match: XP_011658557.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus] >KGN43178.1 30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-37
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQW GAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDK+TK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          KKEKKIQRIKDKIEVPSST WPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

BLAST of Cla97C02G031520 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 4.1e-36
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 3  MAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          MAQWCGA+A+ VMAAERRSPSLTSSM VEGLVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTRWPLPFKLI 89
          EKKIQRIKDKIEVPSST WPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

BLAST of Cla97C02G031520 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 5.4e-36
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 0

Query: 3  MAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          M QWCGAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDKKTKKGK FKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKIEVPSSTRWPLPFKLI 89
          EKKIQRIKDK EVPSST WPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

BLAST of Cla97C02G031520 vs. TrEMBL
Match: tr|A0A1S3BI88|A0A1S3BI88_CUCME (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.0e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQWCGAVARGV+AAERRSPSLTSSM VEGLVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          KKEKKI+RIKDKIEVP ST WPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

BLAST of Cla97C02G031520 vs. TrEMBL
Match: tr|A0A0A0K141|A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQW GAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDK+TK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          KKEKKIQRIKDKIEVPSST WPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

BLAST of Cla97C02G031520 vs. TrEMBL
Match: tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.9e-28
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSL----TSSMVVEGLVPILCGRGDKKTKKGKRFKGSYG 60
          MAM QWCGAVAR VM   R + S     TSS +  G+VPI+CGRGDKKTKKGKRFKGSYG
Sbjct: 1  MAMMQWCGAVARRVMMTHRPASSSLSTPTSSSMGGGVVPIVCGRGDKKTKKGKRFKGSYG 60

Query: 61 NARPKKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          NARPKKEKKI+RIKD++EVP ST WPLPFKLI
Sbjct: 61 NARPKKEKKIERIKDRVEVPRSTPWPLPFKLI 92

BLAST of Cla97C02G031520 vs. TrEMBL
Match: tr|A0A218X516|A0A218X516_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019615 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRS---PSLTSSMVVEGL--VPILCGRGDKKTKKGKRFKGSY 60
          MAM QWCGAVAR  MAA+R +   P ++S +   G    P+LCGRGDK+TKKGKRFKGSY
Sbjct: 1  MAMMQWCGAVARRAMAAQRPAVILPPVSSVVAAAGSAGAPVLCGRGDKRTKKGKRFKGSY 60

Query: 61 GNARPKKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          GNARPKKEKKI+RIKD++EVP ST WPLPFKLI
Sbjct: 61 GNARPKKEKKIERIKDRVEVPRSTPWPLPFKLI 93

BLAST of Cla97C02G031520 vs. TrEMBL
Match: tr|A0A1R3HVM9|A0A1R3HVM9_COCAP (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210143 GN=CCACVL1_16756 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 69/91 (75.82%), Postives = 72/91 (79.12%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTS---SMVVEGLVPILCGRGDKKTKKGKRFKGSYGN 60
          MAM QWCGAVAR VM  +R  PSLTS   S       PILCGRGDKKTKKGKRFKGSYGN
Sbjct: 1  MAMMQWCGAVARRVMTGQR--PSLTSASPSGAAAMGAPILCGRGDKKTKKGKRFKGSYGN 60

Query: 61 ARPKKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          ARPKKEK I+RIKDK+EVP ST WPLPFKLI
Sbjct: 61 ARPKKEKMIERIKDKVEVPRSTPWPLPFKLI 89

BLAST of Cla97C02G031520 vs. Swiss-Prot
Match: sp|Q9SJU8|RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.2e-24
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPI----------LCGRGDKKTKKGKR 60
          MA  QWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P ST WPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of Cla97C02G031520 vs. Swiss-Prot
Match: sp|P47909|RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 36 ILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          + CGRGDKKTK+GKRFKGSYGNARPK+EKKI+RIKD++EVP ST WPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

BLAST of Cla97C02G031520 vs. Swiss-Prot
Match: sp|P47910|RR31_SPIOL (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-04
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 0

Query: 36 ILCGRGDKKTKKGKRFKGSYGNARPKKEKK 66
          I CGRGD+KT KGKRF  S+GNARPK + K
Sbjct: 52 IYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

BLAST of Cla97C02G031520 vs. TAIR10
Match: AT2G21290.1 (unknown protein)

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-25
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 0

Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPI----------LCGRGDKKTKKGKR 60
          MA  QWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTRWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P ST WPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of Cla97C02G031520 vs. TAIR10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4)

HSP 1 Score: 43.5 bits (101), Expect = 7.8e-05
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 0

Query: 36 ILCGRGDKKTKKGKRFKGSYGNARPK 62
          + CGRGD+KT KGKRF  S+GNARP+
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPR 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022933003.14.4e-3895.4530S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30... [more]
XP_008448047.17.5e-3893.18PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo][more]
XP_011658557.11.3e-3794.32PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus] >KGN43178.... [more]
XP_022952601.14.1e-3693.0230S ribosomal protein S31, mitochondrial-like [Cucurbita moschata][more]
XP_022971575.15.4e-3693.0230S ribosomal protein S31, mitochondrial [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
tr|A0A1S3BI88|A0A1S3BI88_CUCME5.0e-3893.1830S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344... [more]
tr|A0A0A0K141|A0A0A0K141_CUCSA8.4e-3894.3230S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006... [more]
tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY7.9e-2873.91Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1[more]
tr|A0A218X516|A0A218X516_PUNGR2.0e-2669.89Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019615 PE=4 SV=1[more]
tr|A0A1R3HVM9|A0A1R3HVM9_COCAP2.0e-2675.82Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210... [more]
Match NameE-valueIdentityDescription
sp|Q9SJU8|RT31_ARATH7.2e-2459.1830S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g... [more]
sp|P47909|RT31_ORYSJ8.2e-2083.0230S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
sp|P47910|RR31_SPIOL3.7e-0470.0030S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P... [more]
Match NameE-valueIdentityDescription
AT2G21290.14.0e-2559.18unknown protein[more]
AT2G38140.17.8e-0569.23plastid-specific ribosomal protein 4[more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR030826Ribo_THX
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0032544 plastid translation
cellular_component GO:0005840 ribosome
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G031520.1Cla97C02G031520.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 39..62
e-value: 1.3E-10
score: 39.0
NoneNo IPR availablePFAMPF17067RPS31coord: 33..78
e-value: 4.1E-11
score: 42.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..67
NoneNo IPR availablePANTHERPTHR34550:SF230S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..88
NoneNo IPR availablePANTHERPTHR34550FAMILY NOT NAMEDcoord: 1..88

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G031520Watermelon (97103) v2wmbwmbB065
Cla97C02G031520Watermelon (97103) v2wmbwmbB109
Cla97C02G031520Silver-seed gourdcarwmbB0144
Cla97C02G031520Silver-seed gourdcarwmbB1028
Cla97C02G031520Cucumber (Gy14) v2cgybwmbB117
Cla97C02G031520Cucumber (Gy14) v2cgybwmbB120
Cla97C02G031520Cucumber (Gy14) v1cgywmbB151
Cla97C02G031520Cucumber (Gy14) v1cgywmbB277
Cla97C02G031520Cucurbita maxima (Rimu)cmawmbB177
Cla97C02G031520Cucurbita maxima (Rimu)cmawmbB570
Cla97C02G031520Cucurbita maxima (Rimu)cmawmbB619
Cla97C02G031520Cucurbita maxima (Rimu)cmawmbB813
Cla97C02G031520Cucurbita moschata (Rifu)cmowmbB163
Cla97C02G031520Cucurbita moschata (Rifu)cmowmbB550
Cla97C02G031520Cucurbita moschata (Rifu)cmowmbB592
Cla97C02G031520Cucurbita moschata (Rifu)cmowmbB787
Cla97C02G031520Wild cucumber (PI 183967)cpiwmbB130
Cla97C02G031520Wild cucumber (PI 183967)cpiwmbB124
Cla97C02G031520Cucumber (Chinese Long) v3cucwmbB126
Cla97C02G031520Cucumber (Chinese Long) v3cucwmbB131
Cla97C02G031520Cucumber (Chinese Long) v2cuwmbB123
Cla97C02G031520Cucumber (Chinese Long) v2cuwmbB128
Cla97C02G031520Bottle gourd (USVL1VR-Ls)lsiwmbB056
Cla97C02G031520Bottle gourd (USVL1VR-Ls)lsiwmbB432
Cla97C02G031520Melon (DHL92) v3.6.1medwmbB105
Cla97C02G031520Melon (DHL92) v3.6.1medwmbB273
Cla97C02G031520Melon (DHL92) v3.5.1mewmbB113
Cla97C02G031520Melon (DHL92) v3.5.1mewmbB288
Cla97C02G031520Watermelon (Charleston Gray)wcgwmbB068
Cla97C02G031520Watermelon (Charleston Gray)wcgwmbB324
Cla97C02G031520Watermelon (97103) v1wmwmbB087
Cla97C02G031520Watermelon (97103) v1wmwmbB367
Cla97C02G031520Wax gourdwgowmbB241
Cla97C02G031520Wax gourdwgowmbB298
Cla97C02G031520Wax gourdwgowmbB356