CsaV3_7G000400 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGATTTCAATCGCTTTTGTGTTCCTTCTGATTGCATAAAACTTTACTTTCATGATTTGTAATTTTGAAAAAAACAAATCAAGGGTTTCTCGAGGTTTGGGTTTATCTCAAGTCAAGAATTGTTCTATAGTGATTAATCGTCTTGCTGGCGTGTTTTCGATTTCATATTTGACCCATTTTCCTTCGAATCATATCTGCAAATTAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKKEKKIQRIKDKIEGSIACNSGIDFEKLALQIDV
BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_011658557.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus] >KGN43178.1 30S ribosomal protein S31, mitochondrial [Cucumis sativus]) HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo]) HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29 Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28 Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26 Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima]) HSP 1 Score: 127.5 bits (319), Expect = 2.4e-26 Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. TAIR10
Match: AT2G21290.1 (unknown protein) HSP 1 Score: 81.3 bits (199), Expect = 3.6e-16 Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. TAIR10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4) HSP 1 Score: 41.6 bits (96), Expect = 3.2e-04 Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. Swiss-Prot
Match: sp|Q9SJU8|RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 6.6e-15 Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. Swiss-Prot
Match: sp|P47909|RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 2.3e-12 Identity = 32/39 (82.05%), Postives = 38/39 (97.44%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A0A0K141|A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 9.8e-32 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A1S3BI88|A0A1S3BI88_CUCME (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29 Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A218X516|A0A218X516_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019615 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18 Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18 Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 0
BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A1R3HVM9|A0A1R3HVM9_COCAP (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210143 GN=CCACVL1_16756 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17 Identity = 55/77 (71.43%), Postives = 60/77 (77.92%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |