CsaV3_7G000400 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G000400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description30S ribosomal protein S31, mitochondrial
Locationchr7 : 493878 .. 494408 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGATTTCAATCGCTTTTGTGTTCCTTCTGATTGCATAAAACTTTACTTTCATGATTTGTAATTTTGAAAAAAACAAATCAAGGGTTTCTCGAGGTTTGGGTTTATCTCAAGTCAAGAATTGTTCTATAGTGATTAATCGTCTTGCTGGCGTGTTTTCGATTTCATATTTGACCCATTTTCCTTCGAATCATATCTGCAAATTAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG

mRNA sequence

ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG

Coding sequence (CDS)

ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG

Protein sequence

MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKKEKKIQRIKDKIEGSIACNSGIDFEKLALQIDV
BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_011658557.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus] >KGN43178.1 30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQW GAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDK+TKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKI+RIKDKIE
Sbjct: 61 KKEKKIERIKDKIE 74

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 3  MAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKK 62
          MAQW GA+A+ VMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIE 75
          EKKIQRIKDKIE
Sbjct: 61 EKKIQRIKDKIE 72

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-26
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 3  MAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKK 62
          M QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKIE 75
          EKKIQRIKDK E
Sbjct: 61 EKKIQRIKDKNE 72

BLAST of CsaV3_7G000400 vs. TAIR10
Match: AT2G21290.1 (unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-16
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKRTKRGKR 60
          MA  QW GA+ R +M  +R S +L  S     L P           LCGRGDK+TK+GKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIE 75
          FKGSYGN+R KK+K I+RIKDK+E
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLE 84

BLAST of CsaV3_7G000400 vs. TAIR10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4)

HSP 1 Score: 41.6 bits (96), Expect = 3.2e-04
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 0

Query: 36 ILCGRGDKRTKRGKRFKGSYGNARPK 62
          + CGRGD++T +GKRF  S+GNARP+
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPR 78

BLAST of CsaV3_7G000400 vs. Swiss-Prot
Match: sp|Q9SJU8|RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-15
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKRTKRGKR 60
          MA  QW GA+ R +M  +R S +L  S     L P           LCGRGDK+TK+GKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIE 75
          FKGSYGN+R KK+K I+RIKDK+E
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLE 84

BLAST of CsaV3_7G000400 vs. Swiss-Prot
Match: sp|P47909|RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-12
Identity = 32/39 (82.05%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 36 ILCGRGDKRTKRGKRFKGSYGNARPKKEKKIQRIKDKIE 75
          + CGRGDK+TKRGKRFKGSYGNARPK+EKKI+RIKD++E
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVE 68

BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A0A0K141|A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A1S3BI88|A0A1S3BI88_CUCME (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQW GAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDK+TKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKI+RIKDKIE
Sbjct: 61 KKEKKIERIKDKIE 74

BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A218X516|A0A218X516_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019615 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRS---PSLTSSMAVEGL--VPILCGRGDKRTKRGKRFKGSY 60
          MAM QW GAVAR  MAA+R +   P ++S +A  G    P+LCGRGDKRTK+GKRFKGSY
Sbjct: 1  MAMMQWCGAVARRAMAAQRPAVILPPVSSVVAAAGSAGAPVLCGRGDKRTKKGKRFKGSY 60

Query: 61 GNARPKKEKKIQRIKDKIE 75
          GNARPKKEKKI+RIKD++E
Sbjct: 61 GNARPKKEKKIERIKDRVE 79

BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSL----TSSMAVEGLVPILCGRGDKRTKRGKRFKGSYG 60
          MAM QW GAVAR VM   R + S     TSS    G+VPI+CGRGDK+TK+GKRFKGSYG
Sbjct: 1  MAMMQWCGAVARRVMMTHRPASSSLSTPTSSSMGGGVVPIVCGRGDKKTKKGKRFKGSYG 60

Query: 61 NARPKKEKKIQRIKDKIE 75
          NARPKKEKKI+RIKD++E
Sbjct: 61 NARPKKEKKIERIKDRVE 78

BLAST of CsaV3_7G000400 vs. TrEMBL
Match: tr|A0A1R3HVM9|A0A1R3HVM9_COCAP (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210143 GN=CCACVL1_16756 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 55/77 (71.43%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 1  MAMAQWFGAVARGVMAAERRSPSLTS---SMAVEGLVPILCGRGDKRTKRGKRFKGSYGN 60
          MAM QW GAVAR VM  +R  PSLTS   S A     PILCGRGDK+TK+GKRFKGSYGN
Sbjct: 1  MAMMQWCGAVARRVMTGQR--PSLTSASPSGAAAMGAPILCGRGDKKTKKGKRFKGSYGN 60

Query: 61 ARPKKEKKIQRIKDKIE 75
          ARPKKEK I+RIKDK+E
Sbjct: 61 ARPKKEKMIERIKDKVE 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658557.11.5e-31100.00PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus] >KGN43178.... [more]
XP_008448047.11.8e-2994.59PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo][more]
XP_022933003.12.0e-2893.2430S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30... [more]
XP_022952601.11.9e-2690.2830S ribosomal protein S31, mitochondrial-like [Cucurbita moschata][more]
XP_022971575.12.4e-2690.2830S ribosomal protein S31, mitochondrial [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G21290.13.6e-1652.38unknown protein[more]
AT2G38140.13.2e-0461.54plastid-specific ribosomal protein 4[more]
Match NameE-valueIdentityDescription
sp|Q9SJU8|RT31_ARATH6.6e-1552.3830S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g... [more]
sp|P47909|RT31_ORYSJ2.3e-1282.0530S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0K141|A0A0A0K141_CUCSA9.8e-32100.0030S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006... [more]
tr|A0A1S3BI88|A0A1S3BI88_CUCME1.2e-2994.5930S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344... [more]
tr|A0A218X516|A0A218X516_PUNGR4.7e-1867.09Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019615 PE=4 SV=1[more]
tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY4.7e-1867.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1[more]
tr|A0A1R3HVM9|A0A1R3HVM9_COCAP1.8e-1771.43Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR030826Ribo_THX
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000400.1CsaV3_7G000400.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17067RPS31coord: 32..65
e-value: 3.4E-9
score: 36.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..66
NoneNo IPR availablePANTHERPTHR34550FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR34550:SF230S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..78
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 39..62
e-value: 1.7E-10
score: 38.7

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G000400Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G000400Cucumber (Chinese Long) v3cuccucB101
CsaV3_7G000400Silver-seed gourdcarcucB1026
CsaV3_7G000400Cucumber (Gy14) v2cgybcucB093
CsaV3_7G000400Cucumber (Gy14) v2cgybcucB095
CsaV3_7G000400Cucumber (Gy14) v1cgycucB141
CsaV3_7G000400Cucumber (Gy14) v1cgycucB257
CsaV3_7G000400Cucurbita maxima (Rimu)cmacucB0231
CsaV3_7G000400Cucurbita maxima (Rimu)cmacucB0769
CsaV3_7G000400Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G000400Cucurbita moschata (Rifu)cmocucB0219
CsaV3_7G000400Cucurbita moschata (Rifu)cmocucB0757
CsaV3_7G000400Cucurbita moschata (Rifu)cmocucB0948
CsaV3_7G000400Cucurbita pepo (Zucchini)cpecucB0139
CsaV3_7G000400Cucurbita pepo (Zucchini)cpecucB0947
CsaV3_7G000400Cucurbita pepo (Zucchini)cpecucB1042
CsaV3_7G000400Wild cucumber (PI 183967)cpicucB118
CsaV3_7G000400Wild cucumber (PI 183967)cpicucB119
CsaV3_7G000400Bottle gourd (USVL1VR-Ls)cuclsiB524
CsaV3_7G000400Bottle gourd (USVL1VR-Ls)cuclsiB570
CsaV3_7G000400Melon (DHL92) v3.5.1cucmeB530
CsaV3_7G000400Melon (DHL92) v3.5.1cucmeB568
CsaV3_7G000400Melon (DHL92) v3.6.1cucmedB518
CsaV3_7G000400Melon (DHL92) v3.6.1cucmedB554
CsaV3_7G000400Watermelon (Charleston Gray)cucwcgB558
CsaV3_7G000400Watermelon (Charleston Gray)cucwcgB599
CsaV3_7G000400Watermelon (97103) v1cucwmB604
CsaV3_7G000400Watermelon (97103) v1cucwmB640
CsaV3_7G000400Watermelon (97103) v2cucwmbB539
CsaV3_7G000400Watermelon (97103) v2cucwmbB578
CsaV3_7G000400Wax gourdcucwgoB701
CsaV3_7G000400Wax gourdcucwgoB706