Carg22932 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22932
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein S31, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_124 : 427649 .. 427915 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGATGCAGTGGTGTGGCGCGGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGATGATGCAGTGGTGTGGCGCGGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGATGATGCAGTGGTGTGGCGCGGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI

Homology

[Close]

BLAST of Carg22932 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.8 bits (447), Expect = 3.2e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of Carg22932 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 4.0e-39
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 3  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

[Close]

BLAST of Carg22932 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 5.7e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of Carg22932 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 5.7e-38
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 3  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          M QWCGA+A+ VMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of Carg22932 vs. NCBI nr
Match: XP_011658557.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus] >KGN43178.1 30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 9.8e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of Carg22932 vs. TAIR10
Match: AT2G21290.1 (unknown protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-26
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of Carg22932 vs. TAIR10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4)

HSP 1 Score: 41.2 bits (95), Expect = 3.9e-04
Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPK 62
          + CGRGD+KT KGK F  S+GNARP+
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPR 78

[Close]

BLAST of Carg22932 vs. Swiss-Prot
Match: sp|Q9SJU8|RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.0e-25
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of Carg22932 vs. Swiss-Prot
Match: sp|P47909|RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]

BLAST of Carg22932 vs. TrEMBL
Match: tr|A0A1S3BI88|A0A1S3BI88_CUCME (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.8e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of Carg22932 vs. TrEMBL
Match: tr|A0A0A0K141|A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.5e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of Carg22932 vs. TrEMBL
Match: tr|A0A2N9IYS6|A0A2N9IYS6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSL----TSSMAVEGLVPILCGRGDKKTKKGKIFKGSYG 60
          MAMMQWCGAVAR VM   R + S     TSS    G+VPI+CGRGDKKTKKGK FKGSYG
Sbjct: 1  MAMMQWCGAVARRVMMTHRPASSSLSTPTSSSMGGGVVPIVCGRGDKKTKKGKRFKGSYG 60

Query: 61 NARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          NARPKKEKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 61 NARPKKEKKIERIKDRVEVPRSTPWPLPFKLI 92

[Close]

BLAST of Carg22932 vs. TrEMBL
Match: tr|A0A1R3HVM9|A0A1R3HVM9_COCAP (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210143 GN=CCACVL1_16756 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.1e-28
Identity = 71/91 (78.02%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTS---SMAVEGLVPILCGRGDKKTKKGKIFKGSYGN 60
          MAMMQWCGAVAR VM  +R  PSLTS   S A     PILCGRGDKKTKKGK FKGSYGN
Sbjct: 1  MAMMQWCGAVARRVMTGQR--PSLTSASPSGAAAMGAPILCGRGDKKTKKGKRFKGSYGN 60

Query: 61 ARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          ARPKKEK I+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 ARPKKEKMIERIKDKVEVPRSTPWPLPFKLI 89

[Close]

BLAST of Carg22932 vs. TrEMBL
Match: tr|A0A1R3HYV5|A0A1R3HYV5_9ROSI (Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus olitorius OX=93759 GN=COLO4_26047 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.1e-28
Identity = 71/91 (78.02%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAMMQWCGAVARGVMAAERRSPSLTS---SMAVEGLVPILCGRGDKKTKKGKIFKGSYGN 60
          MAMMQWCGAVAR VM  +R  PSLTS   S A     PILCGRGDKKTKKGK FKGSYGN
Sbjct: 1  MAMMQWCGAVARRVMTGQR--PSLTSASPSGAAAMGAPILCGRGDKKTKKGKRFKGSYGN 60

Query: 61 ARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          ARPKKEK I+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 ARPKKEKMIERIKDKVEVPRSTPWPLPFKLI 89

The following BLAST results are available for this feature:

BLAST of Carg22932 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933003.1	3.2e-41	100.00	30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30...	[more]
XP_022971575.1	4.0e-39	97.67	30S ribosomal protein S31, mitochondrial [Cucurbita maxima]	[more]
XP_008448047.1	5.7e-38	93.18	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo]	[more]
XP_022952601.1	5.7e-38	95.35	30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata]	[more]
XP_011658557.1	9.8e-38	94.32	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus] >KGN43178....	[more]

BLAST of Carg22932 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21290.1	2.7e-26	60.20	unknown protein	[more]
AT2G38140.1	3.9e-04	65.38	plastid-specific ribosomal protein 4	[more]

BLAST of Carg22932 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SJU8\|RT31_ARATH	5.0e-25	60.20	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g...	[more]
sp\|P47909\|RT31_ORYSJ	3.7e-20	83.02	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Carg22932 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BI88\|A0A1S3BI88_CUCME	3.8e-38	93.18	30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344...	[more]
tr\|A0A0A0K141\|A0A0A0K141_CUCSA	6.5e-38	94.32	30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006...	[more]
tr\|A0A2N9IYS6\|A0A2N9IYS6_FAGSY	1.6e-28	75.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58369 PE=4 SV=1	[more]
tr\|A0A1R3HVM9\|A0A1R3HVM9_COCAP	6.1e-28	78.02	Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus capsularis OX=210...	[more]
tr\|A0A1R3HYV5\|A0A1R3HYV5_9ROSI	6.1e-28	78.02	Putative 30S ribosomal protein S31, mitochondrial OS=Corchorus olitorius OX=9375...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR031414	Thx
IPR030826	Ribo_THX

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22932-RA	Carg22932-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 39..62 e-value: 1.8E-12 score: 45.0
None	No IPR available	PFAM	PF17067	RPS31	coord: 32..80 e-value: 1.4E-10 score: 41.1
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..88
None	No IPR available	PANTHER	PTHR34550	FAMILY NOT NAMED	coord: 1..88
IPR031414	30S ribosomal protein Thx	PFAM	PF17070	Thx	coord: 39..64 e-value: 2.5E-6 score: 27.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22932	Cla015884	Watermelon (97103) v1	carwmB0203
Carg22932	Csa7G006280	Cucumber (Chinese Long) v2	carcuB0240
Carg22932	MELO3C013419	Melon (DHL92) v3.5.1	carmeB0218
Carg22932	ClCG02G004560	Watermelon (Charleston Gray)	carwcgB0208
Carg22932	CSPI07G00400	Wild cucumber (PI 183967)	carcpiB0246
Carg22932	CmaCh11G010720	Cucurbita maxima (Rimu)	carcmaB0291
Carg22932	CmaCh19G006940	Cucurbita maxima (Rimu)	carcmaB0293
Carg22932	CmoCh11G010950	Cucurbita moschata (Rifu)	carcmoB0297
Carg22932	CmoCh19G007050	Cucurbita moschata (Rifu)	carcmoB0299
Carg22932	Lsi11G011400	Bottle gourd (USVL1VR-Ls)	carlsiB189
Carg22932	Cp4.1LG04g01190	Cucurbita pepo (Zucchini)	carcpeB0302
Carg22932	Cp4.1LG15g05630	Cucurbita pepo (Zucchini)	carcpeB0300
Carg22932	CsGy7G000340	Cucumber (Gy14) v2	carcgybB0229
Carg22932	MELO3C013419.2	Melon (DHL92) v3.6.1	carmedB0224
Carg22932	CsaV3_7G000400	Cucumber (Chinese Long) v3	carcucB0244
Carg22932	Cla97C02G031520	Watermelon (97103) v2	carwmbB0216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None