CmaCh04G002810 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G002810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Spliceosomal U5 snRNP-specific 15 kDa protein, putative
Location	Cma_Chr04 : 1388327 .. 1390528 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTCCCATCTTCCAGTTTGTTGAATTAATCTCTTGCCCTGATGTACAGAAGGTGTTTAGTTTTTAGCTATATTTAACAAATCAAAAGCCTTCTTTAATTATTGCCCACAAAATTTATATGAAGGGACCTTGAACAAGAAGATAAAACAATTGATGCTGTAATGATCTTCTTATTATTATAAACTGCATTATTAGTACCGAATGAACATGTGCCTACTTAAGTCTATCCCTTTTTCTAGTGACTAAACCAAAATAGACGAACACAATTAAGCAACTTGAAGTCTTTTTAACTGGATATACTGTTTCTGTTGTTGATCATAAATATGCAAATTCAAATTAGCTCACTTCAATATTGACTTCTAAACTGTGGATATGTCAATTTCGAGTTTAGATTGAGAATTATAACGATATAGGAGACAGATTGTAAAGATAGAAAATCGAGAAGGGCTTGAACGTAGAGCTTTGGTTTTAGCTAGTTTATAGTTATTTAATGAGTTTTTTCAAAAACCGCGTACCTATAATTGAATCGAGTGAGATATATGTGCTCCAAAATACAATCTGTATTTATATATATATATATATATATATCTATATATATTTAATTTTGGGTTATGAAATTTTAGATTATTTTGTAGATTTATTAATTTTGAGATATTATTATATTAGGATTAGGCATATCTTATTTTAAGATTTGAGATTCCTAAGAGTTTATTGATTTTAAGTACGAGAGAATTTAATTAATTAATTCGTTTAAAATTAGGATTTTACCATTTTTTTTTCCTCGTTTCTCAACATCTACAATTTGGGCCTAAAACCCTTCGGCCCATTTCACTTCCTCTTCTCTCTTTCCGGCTTATAAAGTTGAGACACCTTTACCTTTTTGACTCTTCTGCGCGTGGTTGCGTTACTGTGTTAGAGAGAGAGCGCGCGAGAGAAGAGAGAAGAGAGAAAGAGCGAAAGAGCGAAAGAGAGAGAGAGATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTCGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGGTCTTTCTCTTTCCCTACTTCACAATTATTGTTGTTCATCATCAGATTTAATCATAATCCTTTTGTGTATATCTCTCCCTACTCCCTGTTTCTTCCTGTTGCTTCTACTGAACTGATATTTGTTCTGTTTCGGCTTTTAATTTCATAATATAAGACTCATTTTTTTCAGTTCTTGGAGTCTATCAAGTCTCGGTCGGTCAAGGATTTTTCTTTTCTATTTTTGGGTTTTCTTTAATCTGGGCTTGATTTTTGTATATATGCTTGCCTCGATTTAGCAATTTTCTGAATTTTATGTGCAGTTTTTAGGATTGGTTGGTTGATCTTCTTCTCTGTTAGCATCATCTGTTCTGTTGCAATTATGCTCCTTGCTCGCTTTCTATAATCATGCCTTCCTATGTATTTGAGCACATCAAACCTATTATGTACCTGAAATGAAGTTCCTTCATTGCAATTGTTATTAAACGACTTCCTTATTGATCTTTAATAATCCAGTCTTTGATTGTTGTTGCTGTATGCACGAGGTTTTTCATGCTAGCGGATTGATCTTTGAGTTCATGGGCCATCTAGACTCTTTTTTGGTGGCTAATTTGTTTAGTCTTTTCCCCCTTGTTTTTGTTGCACGGAGCCACGGTGCTTCCATCCTGAATGTTTAAAGTCAAGAAGATTTTTTCACATAATTTGTTTGGTTTGCTATACATGATCATCTTTATAGTATATTGAGATGTTTATATCTGATTGGTATGTTCTTGATCTAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

mRNA sequence

ATGGACTGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTCCCATCTTCCAAGAGAGAGCGCGCGAGAGAAGAGAGAAGAGAGAAAGAGCGAAAGAGCGAAAGAGAGAGAGAGATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTCGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Coding sequence (CDS)

ATGGACTGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTCCCATCTTCCAAGAGAGAGCGCGCGAGAGAAGAGAGAAGAGAGAAAGAGCGAAAGAGCGAAAGAGAGAGAGAGATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTCGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Protein sequence

MDWRTFQKRCHVKLVPSSKRERAREERREKERKSEREREMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

Homology

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BLAST of CmaCh04G002810 vs. Swiss-Prot
Match: YLS8_ARATH (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.0e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of CmaCh04G002810 vs. Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-70
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE ++IIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

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BLAST of CmaCh04G002810 vs. Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-70
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE ++IIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

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BLAST of CmaCh04G002810 vs. Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.1e-61
Identity = 108/142 (76.06%), Postives = 126/142 (88.73%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE I+IIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

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BLAST of CmaCh04G002810 vs. Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.7e-51
Identity = 93/138 (67.39%), Postives = 113/138 (81.88%), Query Frame = 1


Query: 41  SYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLV 100
           S  LPHLHSGW VDQAI+TEEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 101 DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVYR 160
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE I+IIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 161 GARKGRGLVIAPKDYSTK 179
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

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BLAST of CmaCh04G002810 vs. TrEMBL
Match: V7BQW0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G122000g PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.3e-76
Identity = 139/152 (91.45%), Postives = 149/152 (98.03%), Query Frame = 1


Query: 30  KERKSEREREMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAE 89
           +E K +++++MSYLLPHLHSGWAVDQAIL EEERLV+IRFGHDWDETCMQMDEVLASVAE
Sbjct: 29  QEIKKKKKKKMSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLASVAE 88

Query: 90  TIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ 149
           T+KNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
Sbjct: 89  TLKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ 148

Query: 150 EFINIIETVYRGARKGRGLVIAPKDYSTKYRY 182
           EFI+I+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 149 EFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 180

[Close]

BLAST of CmaCh04G002810 vs. TrEMBL
Match: A0A059BG33_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02580 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-76
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 1


Query: 38  REMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVI 97
           R MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVI
Sbjct: 174 RAMSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVI 233

Query: 98  YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIET 157
           YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+I+ET
Sbjct: 234 YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 293

Query: 158 VYRGARKGRGLVIAPKDYSTKYRY 182
           VYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 294 VYRGARKGRGLVIAPKDYSTKYRY 317

[Close]

BLAST of CmaCh04G002810 vs. TrEMBL
Match: K3YME3_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_015422mg PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-76
Identity = 140/158 (88.61%), Postives = 148/158 (93.67%), Query Frame = 1


Query: 24  REERREKERKSEREREMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEV 83
           R    E+ R   R ++MSYLLPHLHSGWAVDQAIL EEERLV+IRFGHDWDETCMQMDEV
Sbjct: 59  RRREVERRRSGRRRKKMSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEV 118

Query: 84  LASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINW 143
           LA+VAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINW
Sbjct: 119 LAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINW 178

Query: 144 ALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY 182
           ALKDKQEF++I+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 179 ALKDKQEFVDIVETVYRGARKGRGLVIAPKDYSTKYRY 216

[Close]

BLAST of CmaCh04G002810 vs. TrEMBL
Match: A0A0B0MLM5_GOSAR (Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmaCh04G002810 vs. TrEMBL
Match: A0A0A0LLZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmaCh04G002810 vs. TAIR10
Match: AT5G08290.1 (AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 291.6 bits (745), Expect = 3.4e-79
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmaCh04G002810 vs. TAIR10
Match: AT3G24730.1 (AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-20
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 1


Query: 39  EMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIY 98
           EMSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + 
Sbjct: 8   EMSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVA 67

Query: 99  LVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINI 158
           LVD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FI++
Sbjct: 68  LVDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDV 127

Query: 159 IETVYRGARKGRGLVIAP 173
           +E +YRGA KG+ +V  P
Sbjct: 128 VEAIYRGAMKGKMIVQCP 143

[Close]

BLAST of CmaCh04G002810 vs. NCBI nr
Match: gi|1021571838|ref|XP_016177040.1| (PREDICTED: thioredoxin-like protein YLS8 [Arachis ipaensis])

HSP 1 Score: 294.7 bits (753), Expect = 1.1e-76
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmaCh04G002810 vs. NCBI nr
Match: gi|593693776|ref|XP_007147409.1| (hypothetical protein PHAVU_006G122000g [Phaseolus vulgaris])

HSP 1 Score: 293.9 bits (751), Expect = 1.9e-76
Identity = 139/152 (91.45%), Postives = 149/152 (98.03%), Query Frame = 1


Query: 30  KERKSEREREMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAE 89
           +E K +++++MSYLLPHLHSGWAVDQAIL EEERLV+IRFGHDWDETCMQMDEVLASVAE
Sbjct: 29  QEIKKKKKKKMSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLASVAE 88

Query: 90  TIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ 149
           T+KNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
Sbjct: 89  TLKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ 148

Query: 150 EFINIIETVYRGARKGRGLVIAPKDYSTKYRY 182
           EFI+I+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 149 EFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 180

[Close]

BLAST of CmaCh04G002810 vs. NCBI nr
Match: gi|629099303|gb|KCW65068.1| (hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis])

HSP 1 Score: 293.1 bits (749), Expect = 3.3e-76
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 1


Query: 38  REMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVI 97
           R MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVI
Sbjct: 174 RAMSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVI 233

Query: 98  YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIET 157
           YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+I+ET
Sbjct: 234 YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 293

Query: 158 VYRGARKGRGLVIAPKDYSTKYRY 182
           VYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 294 VYRGARKGRGLVIAPKDYSTKYRY 317

[Close]

BLAST of CmaCh04G002810 vs. NCBI nr
Match: gi|944237432|gb|KQL01770.1| (hypothetical protein SETIT_015422mg, partial [Setaria italica])

HSP 1 Score: 292.7 bits (748), Expect = 4.3e-76
Identity = 140/158 (88.61%), Postives = 148/158 (93.67%), Query Frame = 1


Query: 24  REERREKERKSEREREMSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEV 83
           R    E+ R   R ++MSYLLPHLHSGWAVDQAIL EEERLV+IRFGHDWDETCMQMDEV
Sbjct: 59  RRREVERRRSGRRRKKMSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEV 118

Query: 84  LASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINW 143
           LA+VAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINW
Sbjct: 119 LAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINW 178

Query: 144 ALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY 182
           ALKDKQEF++I+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 179 ALKDKQEFVDIVETVYRGARKGRGLVIAPKDYSTKYRY 216

[Close]

BLAST of CmaCh04G002810 vs. NCBI nr
Match: gi|449460616|ref|XP_004148041.1| (PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 4.3e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 40  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 99
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 100 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 159
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 160 RGARKGRGLVIAPKDYSTKYRY 182
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

The following BLAST results are available for this feature:

BLAST of CmaCh04G002810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS8_ARATH	6.0e-78	97.89	Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1	[more]
TXN4A_HUMAN	1.6e-70	85.21	Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1	[more]
TXN4A_MOUSE	1.6e-70	85.21	Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1	[more]
DIMI_SCHPO	5.1e-61	76.06	Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=d...	[more]
DIB1_ASHGO	3.7e-51	67.39	Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F...	[more]

BLAST of CmaCh04G002810 vs. TrEMBL


Match Name	E-value	Identity	Description
V7BQW0_PHAVU	1.3e-76	91.45	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G122000g PE=4 SV=1	[more]
A0A059BG33_EUCGR	2.3e-76	97.22	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02580 PE=4 SV=1	[more]
K3YME3_SETIT	3.0e-76	88.61	Uncharacterized protein OS=Setaria italica GN=SETIT_015422mg PE=4 SV=1	[more]
A0A0B0MLM5_GOSAR	3.0e-76	98.59	Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1	[more]
A0A0A0LLZ8_CUCSA	3.0e-76	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1	[more]

BLAST of CmaCh04G002810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08290.1	3.4e-79	97.89	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]
AT3G24730.1	6.1e-20	37.68	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]

BLAST of CmaCh04G002810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021571838\|ref\|XP_016177040.1\|	1.1e-76	99.30	PREDICTED: thioredoxin-like protein YLS8 [Arachis ipaensis]	[more]
gi\|593693776\|ref\|XP_007147409.1\|	1.9e-76	91.45	hypothetical protein PHAVU_006G122000g [Phaseolus vulgaris]	[more]
gi\|629099303\|gb\|KCW65068.1\|	3.3e-76	97.22	hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis]	[more]
gi\|944237432\|gb\|KQL01770.1\|	4.3e-76	88.61	hypothetical protein SETIT_015422mg, partial [Setaria italica]	[more]
gi\|449460616\|ref\|XP_004148041.1\|	4.3e-76	98.59	PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004123	Dim1
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005681	spliceosomal complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016197	endosomal transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0007067	mitotic nuclear division
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0009536	plastid
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G002810.1	CmaCh04G002810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004123	Dim1 family	PANTHER	PTHR12052	THIOREDOXIN-LIKE PROTEN 4A, 4B	coord: 40..181 score: 3.5E
IPR004123	Dim1 family	PFAM	PF02966	DIM1	coord: 43..175 score: 1.7
IPR004123	Dim1 family	SMART	SM01410	DIM1_2	coord: 43..175 score: 1.2
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 32..181 score: 1.3
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 43..176 score: 9.42
None	No IPR available	unknown	Coil	Coil	coord: 20..40 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G002810	Cucsa.166160	Cucumber (Gy14) v1	cgycmaB0471
CmaCh04G002810	Cla020056	Watermelon (97103) v1	cmawmB724
CmaCh04G002810	Csa5G175720	Cucumber (Chinese Long) v2	cmacuB747
CmaCh04G002810	MELO3C011749	Melon (DHL92) v3.5.1	cmameB654
CmaCh04G002810	ClCG02G014070	Watermelon (Charleston Gray)	cmawcgB642
CmaCh04G002810	CSPI05G08640	Wild cucumber (PI 183967)	cmacpiB757
CmaCh04G002810	CmoCh04G013260	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G002810	CmoCh04G002900	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G002810	Cp4.1LG01g10230	Cucurbita pepo (Zucchini)	cmacpeB722
CmaCh04G002810	Cp4.1LG01g04290	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G002810	MELO3C011749.2	Melon (DHL92) v3.6.1	cmamedB738
CmaCh04G002810	CsaV3_5G006100	Cucumber (Chinese Long) v3	cmacucB0883
CmaCh04G002810	Cla97C02G039800	Watermelon (97103) v2	cmawmbB741
CmaCh04G002810	Bhi07G000926	Wax gourd	cmawgoB0910
CmaCh04G002810	CsGy5G006030	Cucumber (Gy14) v2	cgybcmaB674
CmaCh04G002810	Carg25683	Silver-seed gourd	carcmaB1179
CmaCh04G002810	Carg02055	Silver-seed gourd	carcmaB1171

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G002810	CmaCh04G012520	Cucurbita maxima (Rimu)	cmacmaB531

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G002810	Cucumber (Chinese Long) v3	cmacucB0850
CmaCh04G002810	Cucumber (Chinese Long) v3	cmacucB0892
CmaCh04G002810	Cucurbita maxima (Rimu)	cmacmaB532
CmaCh04G002810	Wild cucumber (PI 183967)	cmacpiB763
CmaCh04G002810	Cucumber (Chinese Long) v2	cmacuB754
CmaCh04G002810	Watermelon (97103) v1	cmawmB650
CmaCh04G002810	Bottle gourd (USVL1VR-Ls)	cmalsiB677