Cp4.1LG01g04290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g04290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExosome complex component RRP41
LocationCp4.1LG01 : 1396177 .. 1403086 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGAGTGTGGAAACCTAGCCCTAATCAAATGCATGTTATACATACATACACACATACATACATATATATACATGTACATATGTATATACATTAATAAAATTAAAAAAAAAAAAACTATAATTTTGCCATTTTGGTTTTTTAATTACATTATTTTAAAAATTAATCTGAAAATTTATGGGAAAGTATTTTATATAATTTAAGCTCAATTTTTTGGTGCGCCTTTCCTTTTGTTATTCTTGTAGAGTTGGCAAAACCTTCGCCGCCGCGCCACTTTCTGCGTCTTCCTTCTCTTCAGTCCTAAAACCCTTCCCAACCTTGCCGCCGCCGCCGTCATCCCTTGTTCCTTACCGCCGAAACCTCGCCCATCGACCTGCCTCCTGCTCCTGGCAAAACCTACGAACTTATTCGAATTGAACCGACTGGCACCGATAATCTAAACTAGCATTCTAAGACTGCAATATCCTTTCGCTCAGCTGTCTAGATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGGTAGTTCCCCTTCTCATGCTGTCGCTTAATGCCTCTTCTTCCTTATTTGAATTCTTCACTCCTGTTCCGCTCAATTTTTTACTTTATTGTTTAATTTTAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGGTACTTACTTTCACTTCTATGAACTGAATGATTCTTGAAAATGGCTGTCTCTTCCTATATTTTTATCGAAGACTAAGTAACGGAATGTCATCACTTTTCTCCTGATTTAGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTATAATAGTTCAGCAATTATTGTATGTACCTCGTTAAAAAAATCTATGAACATAAGAACTTATGGAGCTGTGTATTTTTCTTGTATTAATCCATTTGGGTATTTATGTTGAAGGCTTCTACTGTATTGTTGGAATGAATTCCTTTGTTGCTTGTGTAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTTGAACTTTCTTCTGGATGCTCTTGTTTTGAAGTTCGAATTCTTAATGTGCATTAGTAACCCATTGTTGAATCCTTGATCTCTTTCAGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGTCATTTATTTTTAATCTGTGTTTGTGTGTGTGCACTGCCATAATTGTCCCTTAATTGTGAATGATTACAGTTGATTGAATTCCATTAAATAAAAGTATGGTCAATATTCATATCTTGAAACATAAGAAATTTGTAACCATGAAAGATAGCAGTTAGGTTATTCTAGTTCAATTTTGCTTAGGTGTCACCAGATGGAACAAATTAAAAACTGATGTAAAAGAACTATGATAGAGATGTTTTTATATCTATTTGGTTTAATGCTGTAATTTATATTAAATTATGGCATTCTTCACAATCAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGGTTTTTGACAATAATCTTACGAGCTGCTCCTCTATGATTTTAACCTTCATCTTTTCTCATTTTTATTTGTTACGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTATAGTTAAAGTTAATGATCAAGTCTATCAGATGTAGCTCTTCATATTATTAGTTCTAGTTCAGATATTTTTAGGCCATATTATATTTTCTTGCCATCTTTCTTTATATTTGTTATTTTCTTCAAGCATTCCTCCTTTTTTTTTGTTTTTTTTTTACAAAATAGAAGGTTAAAATTTTTCCGCACTCTCTCCCTGCTATCTTCTTCTATGTGCTTCCTTAATGCCAAAAGTTCGAAGCCTGCAAGTATGTTTTTGTTCACTACCCAACCTCTCAGAAGTTAGGAGCAGCTCTTTTTAGGGAATTCCCTTAAAAACAAGGCCGATGCTCCATGGGAATATGTAGTAAAAAACATTTCATAGGAAACTTGACTTGAGAGAAACAACTACATATAAAAGTATTCAAAGACTCGAGTAGAGACATAAATGAAATTTGAGATATGAGGAATTTTAAAGCTTCTTCGTGGTCTTTCACCTCTATTTTTGTTGTAACTAAAATGTTTCTTTTTCCTAAAAAAATCAATGTTGACAGAGGAACTATTTATTATCCTGTTGGCCTAAGCAGGCCGATGCCTGACTTCTTATTACTTGTTTCTTCATTTCCTTTCAAAGAATACACTTAACGTCTAACTAGAGTGTCTATGCATTGTACAATGTTCTGTCTTCAGTGGTTATGATTTGAAGCATCTAGACTACCTGGCCAATATAATTGTGAAACATCATTAGTTTATGTACTTTCCTTTCTTTTCATGAAGAATGTAGCCTCAGACATTCTGAAAGATTTCTTGTTTATAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTAGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGGTAATTTAATATAACCTGTCTACTGCACCAACATTTGTTTTTATTTAATTTNTTTTTTTTTTTTTTTTTTCCTCTCAAAATGTTGCTTGGTTTAACTAGAACTATTATGGTTTGAAATTATGATATGGGCAGATCTGAATTATGTGGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGGTTCATTAACTTCTACCTTTTCTTCTTCTAATCGCTCTAGTGTAATCTGCCATTTTGGTGATTTTGTGAGACTCAGTTTGCTGTATTTCAAAATCAAATTGATTATTTTTGTTTGTCCTCTCCCTATCCTTTTGTACTGCTTCCAATTTTATATATTACATTCTGTAATATTAAACTAGTCTTCTCTAGTCACCACAATCCATACATTTTGACATGAACATTTGGTGTAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGGTAAGGACTCAATGACTCTTCTCGTTTTTTCCCCTTAAATCTTTACAACTGGACATCGTTATTGAATCAAATTCCATCATAACAATGTACTGTTAACCCCATAGTGTGATTGATGAGGGTTGGATTATTCAAAATTTCTGCTGTTTTTGTTGACAGGTAATGTTAGAGAGTACCAAAAAGCTCGAATATTGCCGTGGAGCATAGCCGAACCGGTTTTCAGGCATTCTTACACAAAGGAAGGAATCTTCAGGTGTGTTCTAACTTCAGTAATGGACTGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTCCCATCTTCCAGTTTGTTGAATTAATCTCTTGCCCTGATGTACAGAATGTGTTTAGTTTTTAGCTTATATTTAACAAATCAAAAGCCTTCACTCATGGATTGGCTTGGCTTAACATTTTTTTATTTTATTTTGTTTCCTTCTTTAATTATTGCCCACAAAATTTATATGAAGGGACCTTGAACAAGAAGATAAAACAATTGATGCTGTAATGATCTTCTTATGTCATAAACTGCATTATTAGTACCGAATGAATATGTGCCTACTTAAGTCTGTTTAACTGGATATACTGTTTCTGTTGTTGATCATAAATATGCAAATTCAAATTAGCTCACTTCAATATTGACTTCTAAACTGAGGATATGTCAATTTCGAGTTTAGACCGAGAATTATGACAATATAGGAGACAGATTGTAAAGATAGAAAATCGAGAAGGGATTGAACGTAGAGCTTCGGTTTTAGCTAGTTTATAGTTATTTAGTGAGTTTTTTCCAAAACCACTTACCTATAATCGAATCGAGTGAGATATATGTGCTCCAACATACAAATGTTACTGAAATATAATAACAAGTACTATGTGTATATATATATATATATATTTTTTTTTTTTTTTTAATTTTGGGTTACGAAATTTTAGATTATTTTGTAGATTTATTAATTTTGAGATATTATTATATTAAAAAGTATATAGGTTTTATAATTTAGATAGAATTAGGCATATTTTATTTTAAGATTTGAGATTCCTAAGAGTATTGATTTTAAGTACGAGAGAATTTAATTAATTAAATCGCTTAAAATTCGGATTTTACCATTTTTTTCTCTCTATAATTTGGGCCTAAAACCCTTCGGCCCATTTCACTTCCTCTTCTCTCTTTCCGGCTTATAAAGTTGAGACACCTTTACCTTTTGACTCTTCTGCGCGTGGTTGCGTTACTGTGTTAGAGAGAGAGCGAGAGAGAGCGAGAGAGAAGAGAGAGAGCGAAAGAGAGAGAGATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTCGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGGTCTTTCTCTTTCCCTACTTCACAATTATTGTTGTTCATCATCAGATTTAATCATAATCCTTTTGTGTATATCTCTCCCTACCCCCTGTTTCTTCTTGTTGCTTCTACTGAACTTATATTTCTTCTGTCCTGACTTTTAATTTCATAGTATAAGACTCATTTTTTCAGTTCTTGGAGTCTATCAAGTCTCGGTCGGTCAAGGATTTTTATTTTCTATTTTTGGGTTTTCTTTAATCTGGGCTTGATTTTTGTATGTATGCTTGCCTCAATTGACCAATTTTCTGAATTTTATGTGCGATTTTTAGAATTGGTTGCTTGATCTTCTCTGTTATCATCATCTGTTCTGTTGCAATTGTGCTCCTTACTCGCTTTCTATAATCATGCTTTCTCATTTATTTGAGCACATCAATCCTATTATGTACCTGAAATGAAGTTCCTTCATTGCAATTGTTATTAAACGACTTGCTTATTGATCTTTAATAATCCAGTCTTTGACTGTTGTTGCTGTATGCACGAGGTTTTCAATGCTAGCGGATTGATCAAAGTTTGAGTTCATGAGCCATCTAGACTCGTTTTTGGTGTATGATTTGTTTAGAGTCTTTTTCCCCTTGTCTTTGTTGTGCGGAGCCACAGTCCTTCCATCGTGAATGTTTAAAGTCATGAAGATTTTTTCACATAATTTGTTTGGTTTGCTCTACATGATCATCTTTATAGTATTTTGAGATGTTTATATCTGATTGGTATGTTCTTGATCTAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTCGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGACGTTCTGCTGCTTCTGCAAGTTCTTATTGATCTTAAATTTTAGAGATCGCGTCTCGAAAATGTGTACTCTATGACATTATTCGCTCGTGAAAAGGATATGGTTTATTTTGGATGTCATTGTGTGCCATGACTTCTCAAAACATTTGATCACTGTTGGACCTCTGATGAGGGAATATAACTGTTTATGGTAACAAGTCTTTAATCAGGTATGTTTTGGTTGAATAAGTTGTTTTCCGATCTATTGATGATGTTTGATTACAATAGTTGATATGAAAATGAACACTGAACTGCCTGGTTTATGAACTAAAAGGGTATGAACACTGAACTTCTAATACACTTCGTTTCATAATTCTGTCATTTGTGATCACATATCCATTTTTCTTCTGGTATAACTAATAGCCATATATGCAGCTTCTATTTTCTGGAAAATTTTGCTCTCTGTAATTCTTCAATGCCTAATCTTTCTTGCAATCTTTTCGACCATTCCTATCACTGCTATTCCAATGACATACCAAGTGACTCCTCTTTGTATAAGCTGCATCCAATGACTATTAACTAACTCCAGTGCCACAGAACCTCCGATGTGTTCCTTCAAGCCGCTGGCACCATCATCTGTCACCATTTGCTGGATTACAGTGGTTGCAACTATCGATATCAAGACTGGTAATGCCAATCTCATGGGGCTAGTATGATCACCACCACCCACTTCAAAATCAAGGTCTTTTGATTCTTTGCTACGTTTGGTCTCTACCCTTGGATTTGAGATTGTGCTTATTGGAGTTTGAGTTGAGACTGGAAGTGCAAGGGTGGTCGGAACCCAGTAATCGTCCTTTATGTATTTTGTTGTAGTTCCATTTTTGTCTTCGGTTTTTGCCTTGAGTTGTTTCCTTGCAGTAATAGCAGCTTGAAGTTTGTTGATTTGTGGTGTGGATGTGTTGACGACGAGCGTCAGGTTTTGACTGTGTTTGGATCCGGTGGCTGTCTGCCAAAATAAGCAATTTGAGATTGATCTGATGGCTTGAATTGCAGACAACTGTGCTTTGTTCTCGAAGGTTGTCCCCTGATAAACAATCATACAACTGGATGAAGTTTTGAACGATTTTAAGTTAATGGTGATGTCGAAGAATATTTTGTGTCTAACCTTGACATGCTGTTTTGAAGTCTTCTCCATAGCTTCCTTGAATCTGGTTTGGAACTTCTTCACGTCTGTGAAAATGTTTGACACTCTTTCACCAGCTGCGTTGCCCATACCAACTCTTACGTTTCC

mRNA sequence

CAGAGTGTGGAAACCTAGCCCTAATCAAATGCATGTTATACATACATACACACATACATACATATATATACATGTACATATGTATATACATTAATAAAATTAAAAAAAAAAAAACTATAATTTTGCCATTTTGGTTTTTTAATTACATTATTTTAAAAATTAATCTGAAAATTTATGGGAAAGTATTTTATATAATTTAAGCTCAATTTTTTGGTGCGCCTTTCCTTTTGTTATTCTTGTAGAGTTGGCAAAACCTTCGCCGCCGCGCCACTTTCTGCGTCTTCCTTCTCTTCAGTCCTAAAACCCTTCCCAACCTTGCCGCCGCCGCCGTCATCCCTTGTTCCTTACCGCCGAAACCTCGCCCATCGACCTGCCTCCTGCTCCTGGCAAAACCTACGAACTTATTCGAATTGAACCGACTGGCACCGATAATCTAAACTAGCATTCTAAGACTGCAATATCCTTTCGCTCAGCTGTCTAGATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTAGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATCTGAATTATGTGGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTCGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGACGTTCTGCTGCTTCTGCAAGTTCTTATTGATCTTAAATTTTAGAGATCGCGTCTCGAAAATGTGTACTCTATGACATTATTCGCTCGTGAAAAGGATATGGTTTATTTTGGATGTCATTGTGTGCCATGACTTCTCAAAACATTTGATCACTGTTGGACCTCTGATGAGGGAATATAACTGTTTATGGTAACAAGTCTTTAATCAGGTATGTTTTGGTTGAATAAGTTGTTTTCCGATCTATTGATGATGTTTGATTACAATAGTTGATATGAAAATGAACACTGAACTGCCTGGTTTATGAACTAAAAGGGTATGAACACTGAACTTCTAATACACTTCGTTTCATAATTCTGTCATTTGTGATCACATATCCATTTTTCTTCTGGTATAACTAATAGCCATATATGCAGCTTCTATTTTCTGGAAAATTTTGCTCTCTGTAATTCTTCAATGCCTAATCTTTCTTGCAATCTTTTCGACCATTCCTATCACTGCTATTCCAATGACATACCAAGTGACTCCTCTTTGTATAAGCTGCATCCAATGACTATTAACTAACTCCAGTGCCACAGAACCTCCGATGTGTTCCTTCAAGCCGCTGGCACCATCATCTGTCACCATTTGCTGGATTACAGTGGTTGCAACTATCGATATCAAGACTGGTAATGCCAATCTCATGGGGCTAGTATGATCACCACCACCCACTTCAAAATCAAGGTCTTTTGATTCTTTGCTACGTTTGGTCTCTACCCTTGGATTTGAGATTGTGCTTATTGGAGTTTGAGTTGAGACTGGAAGTGCAAGGGTGGTCGGAACCCAGTAATCGTCCTTTATGTATTTTGTTGTAGTTCCATTTTTGTCTTCGGTTTTTGCCTTGAGTTGTTTCCTTGCAGTAATAGCAGCTTGAAGTTTGTTGATTTGTGGTGTGGATGTGTTGACGACGAGCGTCAGGTTTTGACTGTGTTTGGATCCGGTGGCTGTCTGCCAAAATAAGCAATTTGAGATTGATCTGATGGCTTGAATTGCAGACAACTGTGCTTTGTTCTCGAAGGTTGTCCCCTGATAAACAATCATACAACTGGATGAAGTTTTGAACGATTTTAAGTTAATGGTGATGTCGAAGAATATTTTGTGTCTAACCTTGACATGCTGTTTTGAAGTCTTCTCCATAGCTTCCTTGAATCTGGTTTGGAACTTCTTCACGTCTGTGAAAATGTTTGACACTCTTTCACCAGCTGCGTTGCCCATACCAACTCTTACGTTTCC

Coding sequence (CDS)

ATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTAGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATCTGAATTATGTGGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTCGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Protein sequence

MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Homology
[Close]
BLAST of Cp4.1LG01g04290 vs. Swiss-Prot
Match: RRP41_ARATH (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana GN=RRP41 PE=1 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 5.2e-96
Identity = 182/228 (79.82%), Postives = 201/228 (88.16%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSNQ-ALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           DVTVG LPKLDKV+LLQMD+KLP++ FE V  LA EGCKA+A  IRE+
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREV 227

[Close]
BLAST of Cp4.1LG01g04290 vs. Swiss-Prot
Match: EXOS4_MOUSE (Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 246.1 bits (627), Expect = 5.2e-64
Identity = 120/221 (54.30%), Postives = 166/221 (75.11%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +RS
Sbjct: 4   LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAV 221
            + +  LP   ++ LL+MDS+L  D  E V++ A +  + V
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGV 224

[Close]
BLAST of Cp4.1LG01g04290 vs. Swiss-Prot
Match: EXOS4_HUMAN (Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 242.7 bits (618), Expect = 5.8e-63
Identity = 118/221 (53.39%), Postives = 166/221 (75.11%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R+
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAV 221
            + +  LP   ++ LL+MD++L  D  E V++ A +  + V
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDV 224

[Close]
BLAST of Cp4.1LG01g04290 vs. Swiss-Prot
Match: EXOS4_BOVIN (Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 241.5 bits (615), Expect = 1.3e-62
Identity = 118/221 (53.39%), Postives = 165/221 (74.66%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R+
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAV 221
            + +  LP   ++ LL+MD++L  D  E V++ A    + V
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDV 224

[Close]
BLAST of Cp4.1LG01g04290 vs. Swiss-Prot
Match: RRP41_THEKO (Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rrp41 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-54
Identity = 114/240 (47.50%), Postives = 159/240 (66.25%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ++ +   G R+DGR+  E+R I+ E+G +  ADGSA  E G  KVLAAVYGPRE+  +  
Sbjct: 8   LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR  +E  +L H+ PR+ ID+F
Sbjct: 68  QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 127

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           +++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  D
Sbjct: 128 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 187

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIRE-MDEVLASVAETIK 240
           V V  +P  + +TLLQMD  L  D F   ++LAI+G KAV    RE + E    +A+ ++
Sbjct: 188 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQEVE 246

[Close]
BLAST of Cp4.1LG01g04290 vs. TrEMBL
Match: A5BIU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01420 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 4.1e-116
Identity = 213/227 (93.83%), Postives = 223/227 (98.24%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA FEMGNTKV+AAVYGPREV+NRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVG LPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREV 227

[Close]
BLAST of Cp4.1LG01g04290 vs. TrEMBL
Match: B9SWZ0_RICCO (Exosome complex exonuclease RRP41, putative OS=Ricinus communis GN=RCOM_0490080 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-115
Identity = 210/227 (92.51%), Postives = 224/227 (98.68%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLRLDGRRPMEMRQ+RA+IGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+ +QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI+
Sbjct: 61  QIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVG LPKLDKVTLLQMD+KLP+D FENVMQLA+EGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREI 227

[Close]
BLAST of Cp4.1LG01g04290 vs. TrEMBL
Match: G7L401_MEDTR (Exosome complex exonuclease RRP41 OS=Medicago truncatula GN=MTR_7g116920 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 7.7e-115
Identity = 211/227 (92.95%), Postives = 222/227 (97.80%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLR DGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMS++ALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI+
Sbjct: 61  QMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPM D+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVG LPKLDKVTLLQMDSKLP+DI ENVMQLA EGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREI 227

[Close]
BLAST of Cp4.1LG01g04290 vs. TrEMBL
Match: I1MTV9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G102000 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.3e-114
Identity = 209/227 (92.07%), Postives = 223/227 (98.24%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNR+Q
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+ ALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHL+PRSQIDI+
Sbjct: 61  QISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VT+G LPKLDKVTLLQMDSKLP+DI ENVMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREV 227

[Close]
BLAST of Cp4.1LG01g04290 vs. TrEMBL
Match: A0A0D2TCT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105300 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 2.3e-114
Identity = 210/231 (90.91%), Postives = 225/231 (97.40%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLRLDGRRPMEMRQ+RAEIG V+KA+GSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAEIGTVAKANGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNY+EDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYIEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREMDEVL 232
           VTVG LPKLDKVTLLQMD+KLPVDIFENVM LAIEGCKA+ANYIRE+  V+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPVDIFENVMGLAIEGCKAIANYIREVRTVV 231

[Close]
BLAST of Cp4.1LG01g04290 vs. TAIR10
Match: AT3G61620.1 (AT3G61620.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 352.4 bits (903), Expect = 2.9e-97
Identity = 182/228 (79.82%), Postives = 201/228 (88.16%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSNQ-ALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           DVTVG LPKLDKV+LLQMD+KLP++ FE V  LA EGCKA+A  IRE+
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREV 227

[Close]
BLAST of Cp4.1LG01g04290 vs. TAIR10
Match: AT5G08290.1 (AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 208.4 bits (529), Expect = 6.8e-54
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 226 EMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 285
           +MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN
Sbjct: 40  QMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 99

Query: 286 NKINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY 329
           NKINWALKDKQEFI+IIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 100 NKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Cp4.1LG01g04290 vs. TAIR10
Match: AT4G27490.1 (AT4G27490.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-21
Identity = 64/227 (28.19%), Postives = 112/227 (49.34%), Query Frame = 1 

Query: 10  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVR 69
           R DGR   + R    + GAVS A GSA  E GNTKV+ +V+GPRE   ++   S+   + 
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 93

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGG 129
           C  +  NF++    +         E S ++ + +E  I+    P++ +D+F  VL++ G 
Sbjct: 94  CNVSYTNFASPTLGQGTD----HKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 153

Query: 130 TRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKL 189
             S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P  
Sbjct: 154 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 213

Query: 190 DKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREMDEVLASVAE 237
            ++T L +  +         MQL ++    +   +R+  +  AS ++
Sbjct: 214 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQSASASD 255

[Close]
BLAST of Cp4.1LG01g04290 vs. TAIR10
Match: AT3G46210.1 (AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 9.0e-14
Identity = 56/191 (29.32%), Postives = 91/191 (47.64%), Query Frame = 1 

Query: 10  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVR 69
           R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACF-- 64

Query: 70  CEYTMANFSTGDRMRKPKGD---RRSTEISLVIRQTMEE-CILTHLMPRSQIDIFVQVLQ 129
                      + + KPK     +   E  +++++T++  C+LT + P +   + +QV+ 
Sbjct: 65  -----------EVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVH 124

Query: 130 ADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG------ 189
            DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+          
Sbjct: 125 DDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLV 181

[Close]
BLAST of Cp4.1LG01g04290 vs. TAIR10
Match: AT3G24730.1 (AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 1 

Query: 228 DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTG 287
           DE+LA     +  FA + LVD+ +  D     + +D    PST+ FFF   H+ +D GT 
Sbjct: 50  DEILAKSVRDVSKFAKVALVDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTA 109

Query: 288 NNNKINWALKDKQEFINIIETVYRGARKGRGLVIAP 320
           ++ K   A   KQ+FI+++E +YRGA KG+ +V  P
Sbjct: 110 DHTKWVGAFHIKQDFIDVVEAIYRGAMKGKMIVQCP 143

[Close]
BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: gi|731421795|ref|XP_010661873.1| (PREDICTED: exosome complex component RRP41 [Vitis vinifera])

HSP 1 Score: 426.0 bits (1094), Expect = 5.9e-116
Identity = 213/227 (93.83%), Postives = 223/227 (98.24%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA FEMGNTKV+AAVYGPREV+NRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVG LPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREV 227

[Close]
BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: gi|255579328|ref|XP_002530509.1| (PREDICTED: exosome complex component RRP41 homolog [Ricinus communis])

HSP 1 Score: 424.5 bits (1090), Expect = 1.7e-115
Identity = 210/227 (92.51%), Postives = 224/227 (98.68%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLRLDGRRPMEMRQ+RA+IGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+ +QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI+
Sbjct: 61  QIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVG LPKLDKVTLLQMD+KLP+D FENVMQLA+EGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREI 227

[Close]
BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: gi|502113879|ref|XP_004494789.1| (PREDICTED: exosome complex component RRP41 isoform X1 [Cicer arietinum])

HSP 1 Score: 424.1 bits (1089), Expect = 2.2e-115
Identity = 212/227 (93.39%), Postives = 223/227 (98.24%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLR+DGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVNPEGLRVDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMS+QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDI+
Sbjct: 61  QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVG LPKLDKVTLLQMDSKLPVDI ENVMQLA EGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDSKLPVDILENVMQLATEGCKAIANYIREI 227

[Close]
BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: gi|1009142620|ref|XP_015888820.1| (PREDICTED: exosome complex component RRP41 homolog [Ziziphus jujuba])

HSP 1 Score: 423.3 bits (1087), Expect = 3.8e-115
Identity = 211/227 (92.95%), Postives = 224/227 (98.68%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QM++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CI+THLMPRSQIDIF
Sbjct: 61  QMNDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIMTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNST LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSSGYLNSTALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVGFLPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKAVANYIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPLDIFENVMQLAIEGCKAVANYIREL 227

[Close]
BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: gi|357512489|ref|XP_003626533.1| (exosome complex exonuclease RRP41 [Medicago truncatula])

HSP 1 Score: 421.8 bits (1083), Expect = 1.1e-114
Identity = 211/227 (92.95%), Postives = 222/227 (97.80%), Query Frame = 1 

Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLR DGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMS++ALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI+
Sbjct: 61  QMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPM D+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           VTVG LPKLDKVTLLQMDSKLP+DI ENVMQLA EGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREI 227

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g04290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP41_ARATH5.2e-9679.82Exosome complex component RRP41 homolog OS=Arabidopsis thaliana GN=RRP41 PE=1 SV... [more]
EXOS4_MOUSE5.2e-6454.30Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=1 SV=3[more]
EXOS4_HUMAN5.8e-6353.39Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3[more]
EXOS4_BOVIN1.3e-6253.39Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3[more]
RRP41_THEKO2.9e-5447.50Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-91... [more]
BLAST of Cp4.1LG01g04290 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BIU1_VITVI4.1e-11693.83Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01420 PE=4 SV=... [more]
B9SWZ0_RICCO1.2e-11592.51Exosome complex exonuclease RRP41, putative OS=Ricinus communis GN=RCOM_0490080 ... [more]
G7L401_MEDTR7.7e-11592.95Exosome complex exonuclease RRP41 OS=Medicago truncatula GN=MTR_7g116920 PE=4 SV... [more]
I1MTV9_SOYBN1.3e-11492.07Uncharacterized protein OS=Glycine max GN=GLYMA_17G102000 PE=4 SV=1[more]
A0A0D2TCT2_GOSRA2.3e-11490.91Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105300 PE=4 SV=1[more]
BLAST of Cp4.1LG01g04290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61620.12.9e-9779.82 3'-5'-exoribonuclease family protein[more]
AT5G08290.16.8e-5498.06 mRNA splicing factor, thioredoxin-like U5 snRNP[more]
AT4G27490.15.8e-2128.19 3'-5'-exoribonuclease family protein[more]
AT3G46210.19.0e-1429.32 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT3G24730.11.2e-1037.50 mRNA splicing factor, thioredoxin-like U5 snRNP[more]
BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|731421795|ref|XP_010661873.1|5.9e-11693.83PREDICTED: exosome complex component RRP41 [Vitis vinifera][more]
gi|255579328|ref|XP_002530509.1|1.7e-11592.51PREDICTED: exosome complex component RRP41 homolog [Ricinus communis][more]
gi|502113879|ref|XP_004494789.1|2.2e-11593.39PREDICTED: exosome complex component RRP41 isoform X1 [Cicer arietinum][more]
gi|1009142620|ref|XP_015888820.1|3.8e-11592.95PREDICTED: exosome complex component RRP41 homolog [Ziziphus jujuba][more]
gi|357512489|ref|XP_003626533.1|1.1e-11492.95exosome complex exonuclease RRP41 [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR020568Ribosomal_S5_D2-typ_fold
IPR015847ExoRNase_PH_dom2
IPR012336Thioredoxin-like_fold
IPR004123Dim1
IPR001247ExoRNase_PH_dom1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0007030 Golgi organization
biological_process GO:0008150 biological_process
biological_process GO:0007033 vacuole organization
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0007067 mitotic nuclear division
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0016197 endosomal transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009536 plastid
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0009022 tRNA nucleotidyltransferase activity
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04290.1Cp4.1LG01g04290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 18..148
score: 1.4
IPR004123Dim1 familyPFAMPF02966DIM1coord: 226..322
score: 4.0
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 193..322
score: 9.5
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 228..328
score: 1.5
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 225..323
score: 4.82
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 151..215
score: 7.
IPR015847Exoribonuclease, phosphorolytic domain 2unknownSSF55666Ribonuclease PH domain 2-likecoord: 148..226
score: 3.93
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 7..175
score: 8.1
IPR027408PNPase/RNase PH domainGENE3DG3DSA:3.30.230.70coord: 7..227
score: 6.2
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 1..250
score: 7.4E
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 1..250
score: 7.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g04290Cucsa.166150Cucumber (Gy14) v1cgycpeB0457
Cp4.1LG01g04290CmaCh04G002810Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g04290CmaCh04G012520Cucurbita maxima (Rimu)cmacpeB723
Cp4.1LG01g04290CmoCh04G013260Cucurbita moschata (Rifu)cmocpeB675
Cp4.1LG01g04290CmoCh04G002890Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g04290Cla020057Watermelon (97103) v1cpewmB452
Cp4.1LG01g04290Csa5G175720Cucumber (Chinese Long) v2cpecuB438
Cp4.1LG01g04290MELO3C011749Melon (DHL92) v3.5.1cpemeB378
Cp4.1LG01g04290ClCG02G014060Watermelon (Charleston Gray)cpewcgB377
Cp4.1LG01g04290CSPI05G08640Wild cucumber (PI 183967)cpecpiB438
Cp4.1LG01g04290Lsi04G007960Bottle gourd (USVL1VR-Ls)cpelsiB359
Cp4.1LG01g04290MELO3C011749.2Melon (DHL92) v3.6.1cpemedB438
Cp4.1LG01g04290CsaV3_5G006100Cucumber (Chinese Long) v3cpecucB0542
Cp4.1LG01g04290CsGy5G006030Cucumber (Gy14) v2cgybcpeB647
Cp4.1LG01g04290Carg02055Silver-seed gourdcarcpeB1179
Cp4.1LG01g04290Carg25682Silver-seed gourdcarcpeB1186
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g04290Cp4.1LG01g10230Cucurbita pepo (Zucchini)cpecpeB374
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g04290Cucurbita maxima (Rimu)cmacpeB724
Cp4.1LG01g04290Cucurbita moschata (Rifu)cmocpeB676
Cp4.1LG01g04290Wild cucumber (PI 183967)cpecpiB445
Cp4.1LG01g04290Cucumber (Chinese Long) v2cpecuB444
Cp4.1LG01g04290Watermelon (97103) v1cpewmB379
Cp4.1LG01g04290Cucumber (Chinese Long) v3cpecucB0508
Cp4.1LG01g04290Cucumber (Chinese Long) v3cpecucB0550