Carg25682 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25682
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Exosome complex component rrp41 like
Location	Cucurbita_argyrosperma_scaffold_291 : 103633 .. 107000 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTATTCTTGTAGAGTTGGCAAAACCTTCGCCGCGGCGCCACTTTCTGCGTCTTCCTTCTCTTCAGTCCTAAAACCCTTCCCAACCTTGCCGCCGCCGCCGCCATCCCTTGTTCCTTACCGCCGAAACCTCGCCCATCGACCTGCCTCATGCTCCTGGAAAAACCTACGAACTTATTCGAATTGAACCGACTTGCACCGATAATCTAAACTAGCATTCTAAGACTGCAATATCCTTTCGCTCAGCTGTCTAGATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGGTAGTTCCCCTTCTCATTCTCTTGCTTAATGCCTCTTCTTCCTTATTTGAATTCTTCACTCCTGTTCCGCTCAATTTTTTACTTTATTGTTTAATTTTAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGGTACTTACTTTCACTTCTATGAACTGAATGATTCTTGAAAATGGCTGTCTCTTCCTTTCTTTTTATCGAAGACTAAGTAACGGAATGTCATCACTTTTCTCCTGATTTAGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTATAATAGTTCAGCAATTATTGTATGTACCTCGTTAAAAAAATCTATGAACATAAGAACTTATAGAGCTGTGTATTTTTCTTGTATTAATCCATTTGGGTATTTATGTTGAAGGCTTCTACTGTATTGTTGGAATTAATTCCTTTGTTGCTTATGTAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTTGAACTTTCTTCTGGATGCTCTTGTTTTGAAGTTCGAATTCTTAATGTGCATTAGTAACCCATTGTTGAATCCTTGATCTCTTTCAGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGTTATTTATTTTTAATCTGTGTTTGTGTGTGTTCACTGCCATAATTGTGAATGATTATAGTTGATTGAATTCCATTAAATAGAAGTATGGTCAATATTCATATCTTGAAACATAATAAATTTGTAACCATGAAAGATAGCAGTTAGGTTATTTCTTGTTCAATTTTGATTTGGTGTCACCAGATGGAACAAATTAAAAACATCAGTAAAAGAACTATGATAAAGATGTTTTTATATCTATTTGGTTTAATGCTGTAATTTGTATTAAATTATGGCATTTTTCACAATCAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGGTTTTCGACAATAATCTTACGAGCTGCTCCTCTATGATTTTAACCTTCATCTTTTCTCATTTTTTTTTTTTTTGTTACGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTATAGTTAAAGTTAATGATCAAGTCTATCAGATGTAGCTCTTCATATTATTAGTTCTAGTTCAGATATTTTTAGGCCATATTATCTTTTCTTGCCATCTTTCTTTATATTTGTTATTTTCTTCAAGCATTCCTTTTACAAAATAGTTGATTAAAGTTTTTCTGTACTCTCTCCCTGCTATCTTCTTCTATGTGCTTCCTTTATGCCAAAAGTTCGAAGCCTGCAAGTATATTTTTTCTCACTACCCAACCTCTCAGAAGGCAGCTCTTTTTAGGCAATTCCCTTAAAAAACAAGGCTGATGCTCTATGGGAATATGTCGTCAAAGGCATTTCATAGGAAACTTGACTTGAGAGAGAAACAACTACATATCAAAGTATTCAAATACTCGAGTAGAGACATAAATGAAATTTGAGATATGAGCAATTTTAAAGCTTCTTCGTGGTCTTTCACCTCCATTTTTGTTGTAATTAAAATGTTTCTATTTCCTAAAAAAGTCAACGTTGACAGAGGAACTATTTATAATCCCATTGGCCTAAGCAGGCCGATGCCTGACTTCATATTAATTGTTTCTTCATTTCCTTTTTAATGGAAGAAAATTATGGCTTCTATTGTTTTTGCTTTCAAAGAATACACTTAATTTCTATCATTTTATTCATAAGCTGCAACTAGAGTGTCTATGCATTGTATAATGTTCTGTCTTCAGTGGTTATGATTTGAAGCATCTTGTGAAACATCATTAGTTTATGTACTTCCCTTTCTTTACATGCTGATCTGAAAGATTTCTTGTTTATAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTTGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGGTAATTTAATGTAACTTGTCTACTGCACCAACATTTGGTTTTCCTTCTTTTTTTTTTTTTTTTTTTTTCTCTCTCTCAAAATGTTGTTTGGTTTAACTAGAACTATTATGGATTGAAATTATGATATGGGCAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTTCAGGTTCATTAACTTCTACCTTTCCTTCTTCTCCTCTCTCTAGTGTAATCTGTCATTTTGGTGATTTTGTGGGACTCAGTATTTTAAAACCAAATTGATTAGTTTTGTTTGTCCTCTCCCTATCCTTTTGCACTGCTTCCAATTTTATATATTATATTCTGTAATATTAAACTAGTCTTCTCTAGTCACCACAATCCATACATTTTGACATGAACATTTGGTGCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGGTAAGGTCTCCATGACTCTTCTTCTCATTTTCTTTTTTCCTTAAATCCTTACAAATGGACATTGTTATTGAATCAAATTCCCCATAGTGTGATTGGTGAGGGTTGGATTATTCAAAGTTTCTGCTGTTTTTGTTGACAGGTAATGTTAGAGAGTACCAAAAAGCTCGAATATTGCCGTGGAGCATAGCCAAAACGGTTTTCAGGCATTCTTACACAAAGGAAGGAATCTTCAGGTGTGTTCTAACTTCAGTAATGGACCGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTGATATGAAGTAGTAACTGGTGCCCTTTTTTCCCATCTTCCAGTTTGTTGAATTAATGTCTTGCCCTGATGTACAGAATATGTTTAGTTTTTAGTTTTTTGTTTTATTTGGGTTGGCTAATTTGAATTTGCCCACAAAATTTATATGAAGTTAAAAC

mRNA sequence

TTTTGTTATTCTTGTAGAGTTGGCAAAACCTTCGCCGCGGCGCCACTTTCTGCGTCTTCCTTCTCTTCAGTCCTAAAACCCTTCCCAACCTTGCCGCCGCCGCCGCCATCCCTTGTTCCTTACCGCCGAAACCTCGCCCATCGACCTGCCTCATGCTCCTGGAAAAACCTACGAACTTATTCGAATTGAACCGACTTGCACCGATAATCTAAACTAGCATTCTAAGACTGCAATATCCTTTCGCTCAGCTGTCTAGATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTTGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGGTAATGTTAGAGAGTACCAAAAAGCTCGAATATTGCCGTGGAGCATAGCCAAAACGGTTTTCAGGCATTCTTACACAAAGGAAGGAATCTTCAGGTGTGTTCTAACTTCAGTAATGGACCGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTGATATGAAGTAGTAACTGGTGCCCTTTTTTCCCATCTTCCAGTTTGTTGAATTAATGTCTTGCCCTGATGTACAGAATATGTTTAGTTTTTAGTTTTTTGTTTTATTTGGGTTGGCTAATTTGAATTTGCCCACAAAATTTATATGAAGTTAAAAC

Coding sequence (CDS)

ATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTTGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGGTAATGTTAGAGAGTACCAAAAAGCTCGAATATTGCCGTGGAGCATAG

Protein sequence

MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRGA

Homology

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BLAST of Carg25682 vs. NCBI nr
Match: XP_022941604.1 (exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_022987997.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_023513826.1 exosome complex component RRP41 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473.8 bits (1218), Expect = 3.5e-130
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240

Query: 241 A 242
           A
Sbjct: 241 A 241

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BLAST of Carg25682 vs. NCBI nr
Match: XP_022157614.1 (exosome complex component RRP41 homolog [Momordica charantia])

HSP 1 Score: 454.9 bits (1169), Expect = 1.7e-124
Identity = 229/241 (95.02%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           +QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 LQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVGFLPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKAVA+YIREVMLE+TKKLEY RG
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKAVASYIREVMLENTKKLEYQRG 240

Query: 241 A 242
           A
Sbjct: 241 A 241

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BLAST of Carg25682 vs. NCBI nr
Match: XP_023923262.1 (exosome complex component RRP41 homolog [Quercus suber] >XP_023923263.1 exosome complex component RRP41 homolog [Quercus suber] >XP_023923264.1 exosome complex component RRP41 homolog [Quercus suber] >POE97069.1 exosome complex component rrp41 like [Quercus suber])

HSP 1 Score: 446.8 bits (1148), Expect = 4.6e-122
Identity = 222/240 (92.50%), Postives = 237/240 (98.75%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRC+Y+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCDYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSSGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVGFLPKLDKVTLLQMDSKLP+DIFE VMQLAIEGCKA+ANYIRE+MLE+TK+LEY RG
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPIDIFEKVMQLAIEGCKAIANYIREIMLENTKQLEYRRG 240

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BLAST of Carg25682 vs. NCBI nr
Match: XP_010661873.1 (PREDICTED: exosome complex component RRP41 homolog [Vitis vinifera] >XP_010661874.1 PREDICTED: exosome complex component RRP41 homolog [Vitis vinifera] >CAN81194.1 hypothetical protein VITISV_022853 [Vitis vinifera] >CBI40470.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 446.0 bits (1146), Expect = 7.9e-122
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA FEMGNTKV+AAVYGPREV+NRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVG LPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKA+ANYIREV+LE+TK+LEY RG
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREVLLENTKQLEYRRG 240

[Close]

BLAST of Carg25682 vs. NCBI nr
Match: XP_004494789.1 (PREDICTED: exosome complex component RRP41 isoform X1 [Cicer arietinum] >XP_004494790.1 PREDICTED: exosome complex component RRP41 isoform X1 [Cicer arietinum])

HSP 1 Score: 444.1 bits (1141), Expect = 3.0e-121
Identity = 221/241 (91.70%), Postives = 236/241 (97.93%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLR+DGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVNPEGLRVDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMS+QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDI+
Sbjct: 61  QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVG LPKLDKVTLLQMDSKLPVDI ENVMQLA EGCKA+ANYIRE++LE+TK+LEY RG
Sbjct: 181 VTVGILPKLDKVTLLQMDSKLPVDILENVMQLATEGCKAIANYIREILLENTKQLEYRRG 240

Query: 241 A 242
           +
Sbjct: 241 S 241

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BLAST of Carg25682 vs. TAIR10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 369.4 bits (947), Expect = 1.7e-102
Identity = 191/242 (78.93%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCR 240
           DVTVG LPKLDKV+LLQMD+KLP++ FE V  LA EGCKA+A  IREV+ E+TK+LEY R
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQLEYRR 240

Query: 241 GA 242
            A
Sbjct: 241 AA 241

[Close]

BLAST of Carg25682 vs. TAIR10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-21
Identity = 63/222 (28.38%), Postives = 110/222 (49.55%), Query Frame = 0


Query: 10  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVR 69
           R DGR   + R    + GAVS A GSA  E GNTKV+ +V+GPRE   ++   S+   + 
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 93

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGG 129
           C  +  NF++    +         E S ++ + +E  I+    P++ +D+F  VL++ G 
Sbjct: 94  CNVSYTNFASPTLGQ----GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 153

Query: 130 TRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKL 189
             S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P  
Sbjct: 154 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 213

Query: 190 DKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLES 232
            ++T L +  +         MQL ++    +   +R+ + +S
Sbjct: 214 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQS 250

[Close]

BLAST of Carg25682 vs. TAIR10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 6.6e-14
Identity = 55/188 (29.26%), Postives = 91/188 (48.40%), Query Frame = 0


Query: 10  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVR 69
           R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEK----- 64

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CILTHLMPRSQIDIFVQVLQADG 129
                A F    + +  +  +   E  +++++T++  C+LT + P +   + +QV+  DG
Sbjct: 65  -----ACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVHDDG 124

Query: 130 GTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PD 189
                 INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+
Sbjct: 125 SLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPN 181

[Close]

BLAST of Carg25682 vs. TAIR10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 63/221 (28.51%), Postives = 98/221 (44.34%), Query Frame = 0


Query: 7   EGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVY--GPREVQNRSQQMS- 66
           +G R+DGR   E+R I  E   +    GSALF  G+T+VL  V    P E Q+    +  
Sbjct: 361 DGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGP 420

Query: 67  NQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ-----ID 126
            +      Y+   + T +  ++   +RR      V   T+ E  L  ++P  +     I 
Sbjct: 421 PKKRFMLHYSFPPYCTNEVGKRGGLNRRE-----VGHGTLAEKALLAVLPPEEAFPYTIR 480

Query: 127 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTP-----------LL 186
           I  +V+ +DG T  A +   ++AL DAGIP+R  V   S G +               + 
Sbjct: 481 INSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVT 540

Query: 187 DLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSK---LPVDI 206
           D+  +ED  G  D  +      D VT +Q+D K   +P+DI
Sbjct: 541 DILGLEDHLGDMDFKIA--GTRDGVTAIQLDIKPAGIPLDI 574

[Close]

BLAST of Carg25682 vs. TAIR10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 44.7 bits (104), Expect = 9.6e-05
Identity = 45/157 (28.66%), Postives = 69/157 (43.95%), Query Frame = 0


Query: 7   EGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQA 66
           E LR DGR+  + R     +G VS ADGSAL ++G+T +LAA+    EV   S    ++ 
Sbjct: 34  ESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAI--RMEVMTPSTDSPDEG 93

Query: 67  LVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMP------------- 126
            +  E+ M    +           R  E + VI + + + IL+  M              
Sbjct: 94  CIAIEFHMPPICS-----PTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAA 153

Query: 127 -RSQIDIFVQVLQADGGTRSACINAATLALADAGIPM 150
               +DI+   L ADG    A + AA  A ++  IP+
Sbjct: 154 WMGYLDIY--CLDADGALFDAALLAAVAAFSNLQIPI 181

[Close]

BLAST of Carg25682 vs. Swiss-Prot
Match: sp|Q9SP08|RRP41_ARATH (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.1e-101
Identity = 191/242 (78.93%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCR 240
           DVTVG LPKLDKV+LLQMD+KLP++ FE V  LA EGCKA+A  IREV+ E+TK+LEY R
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQLEYRR 240

Query: 241 GA 242
            A
Sbjct: 241 AA 241

[Close]

BLAST of Carg25682 vs. Swiss-Prot
Match: sp|Q921I9|EXOS4_MOUSE (Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-64
Identity = 122/241 (50.62%), Postives = 173/241 (71.78%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +RS
Sbjct: 4   LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCR 240
            + +  LP   ++ LL+MDS+L  D  E V++ A +  + V   +  V+ +  ++     
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEASVSL 243

[Close]

BLAST of Carg25682 vs. Swiss-Prot
Match: sp|Q9NPD3|EXOS4_HUMAN (Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 245.4 bits (625), Expect = 6.7e-64
Identity = 120/241 (49.79%), Postives = 173/241 (71.78%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R+
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCR 240
            + +  LP   ++ LL+MD++L  D  E V++ A +  + V   +  V+ +  ++     
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 243

[Close]

BLAST of Carg25682 vs. Swiss-Prot
Match: sp|Q7YRA3|EXOS4_BOVIN (Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-63
Identity = 120/241 (49.79%), Postives = 172/241 (71.37%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R+
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCR 240
            + +  LP   ++ LL+MD++L  D  E V++ A    + V   +  V+ +  ++     
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVLL 243

[Close]

BLAST of Carg25682 vs. Swiss-Prot
Match: sp|Q5JIR6|RRP41_THEKO (Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-55
Identity = 114/235 (48.51%), Postives = 156/235 (66.38%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ++ +   G R+DGR+  E+R I+ E+G +  ADGSA  E G  KVLAAVYGPRE+  +  
Sbjct: 8   LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR  +E  +L H+ PR+ ID+F
Sbjct: 68  QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 127

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           +++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  D
Sbjct: 128 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 187

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKL 236
           V V  +P  + +TLLQMD  L  D F   ++LAI+G KAV    RE + E   K+
Sbjct: 188 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKI 241

[Close]

BLAST of Carg25682 vs. TrEMBL
Match: tr|A0A2P4KVL9|A0A2P4KVL9_QUESU (Exosome complex component rrp41 like OS=Quercus suber OX=58331 GN=CFP56_23054 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 3.0e-122
Identity = 222/240 (92.50%), Postives = 237/240 (98.75%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRC+Y+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCDYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSSGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVGFLPKLDKVTLLQMDSKLP+DIFE VMQLAIEGCKA+ANYIRE+MLE+TK+LEY RG
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPIDIFEKVMQLAIEGCKAIANYIREIMLENTKQLEYRRG 240

[Close]

BLAST of Carg25682 vs. TrEMBL
Match: tr|A5BIU1|A5BIU1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0046g01420 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 5.2e-122
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA FEMGNTKV+AAVYGPREV+NRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVG LPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKA+ANYIREV+LE+TK+LEY RG
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREVLLENTKQLEYRRG 240

[Close]

BLAST of Carg25682 vs. TrEMBL
Match: tr|A0A1S2XUT9|A0A1S2XUT9_CICAR (exosome complex component RRP41 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101500832 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 2.0e-121
Identity = 221/241 (91.70%), Postives = 236/241 (97.93%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLR+DGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVNPEGLRVDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMS+QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDI+
Sbjct: 61  QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVG LPKLDKVTLLQMDSKLPVDI ENVMQLA EGCKA+ANYIRE++LE+TK+LEY RG
Sbjct: 181 VTVGILPKLDKVTLLQMDSKLPVDILENVMQLATEGCKAIANYIREILLENTKQLEYRRG 240

Query: 241 A 242
           +
Sbjct: 241 S 241

[Close]

BLAST of Carg25682 vs. TrEMBL
Match: tr|B9SWZ0|B9SWZ0_RICCO (Exosome complex exonuclease RRP41, putative OS=Ricinus communis OX=3988 GN=RCOM_0490080 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 2.0e-121
Identity = 219/240 (91.25%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+VSPEGLRLDGRRPMEMRQ+RA+IGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+ +QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI+
Sbjct: 61  QIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVG LPKLDKVTLLQMD+KLP+D FENVMQLA+EGCKA+ANYIRE++LE+TK+LEY RG
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREILLENTKQLEYRRG 240

[Close]

BLAST of Carg25682 vs. TrEMBL
Match: tr|A0A2I4FCW6|A0A2I4FCW6_9ROSI (exosome complex component RRP41 homolog OS=Juglans regia OX=51240 GN=LOC108997590 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 7.5e-121
Identity = 219/240 (91.25%), Postives = 237/240 (98.75%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRRPMEMRQIRAEIG+V+KADGSALFEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEYVNPEGLRLDGRRPMEMRQIRAEIGSVAKADGSALFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S++ALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CI+THLMPRSQIDIF
Sbjct: 61  QISDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIMTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIP+RD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPLRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG 240
           VTVGFLPKLDKVTLLQMDSKL +D+FENVMQLAIEGCKAVANYIRE++LE+TK+LEY RG
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLSIDLFENVMQLAIEGCKAVANYIREILLENTKQLEYRRG 240

The following BLAST results are available for this feature:

BLAST of Carg25682 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941604.1	3.5e-130	100.00	exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exo...	[more]
XP_022157614.1	1.7e-124	95.02	exosome complex component RRP41 homolog [Momordica charantia]	[more]
XP_023923262.1	4.6e-122	92.50	exosome complex component RRP41 homolog [Quercus suber] >XP_023923263.1 exosome ...	[more]
XP_010661873.1	7.9e-122	92.92	PREDICTED: exosome complex component RRP41 homolog [Vitis vinifera] >XP_01066187...	[more]
XP_004494789.1	3.0e-121	91.70	PREDICTED: exosome complex component RRP41 isoform X1 [Cicer arietinum] >XP_0044...	[more]

BLAST of Carg25682 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61620.1	1.7e-102	78.93	3'-5'-exoribonuclease family protein	[more]
AT4G27490.1	1.9e-21	28.38	3'-5'-exoribonuclease family protein	[more]
AT3G46210.1	6.6e-14	29.26	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G14580.1	1.2e-10	28.51	polyribonucleotide nucleotidyltransferase, putative	[more]
AT1G60080.1	9.6e-05	28.66	3'-5'-exoribonuclease family protein	[more]

BLAST of Carg25682 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SP08\|RRP41_ARATH	3.1e-101	78.93	Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41...	[more]
sp\|Q921I9\|EXOS4_MOUSE	1.8e-64	50.62	Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3	[more]
sp\|Q9NPD3\|EXOS4_HUMAN	6.7e-64	49.79	Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3	[more]
sp\|Q7YRA3\|EXOS4_BOVIN	1.9e-63	49.79	Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3	[more]
sp\|Q5JIR6\|RRP41_THEKO	2.5e-55	48.51	Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-91...	[more]

BLAST of Carg25682 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4KVL9\|A0A2P4KVL9_QUESU	3.0e-122	92.50	Exosome complex component rrp41 like OS=Quercus suber OX=58331 GN=CFP56_23054 PE...	[more]
tr\|A5BIU1\|A5BIU1_VITVI	5.2e-122	92.92	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0046g01420 PE=4 SV=...	[more]
tr\|A0A1S2XUT9\|A0A1S2XUT9_CICAR	2.0e-121	91.70	exosome complex component RRP41 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC1015...	[more]
tr\|B9SWZ0\|B9SWZ0_RICCO	2.0e-121	91.25	Exosome complex exonuclease RRP41, putative OS=Ricinus communis OX=3988 GN=RCOM_...	[more]
tr\|A0A2I4FCW6\|A0A2I4FCW6_9ROSI	7.5e-121	91.25	exosome complex component RRP41 homolog OS=Juglans regia OX=51240 GN=LOC10899759...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036345	ExoRNase_PH_dom2_sf
IPR020568	Ribosomal_S5_D2-typ_fold
IPR015847	ExoRNase_PH_dom2
IPR001247	ExoRNase_PH_dom1
IPR027408	PNPase/RNase_PH_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25682-RA	Carg25682-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	G3DSA:3.30.230.70		coord: 1..237 e-value: 3.1E-84 score: 284.2
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 18..148 e-value: 6.4E-38 score: 130.1
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 151..215 e-value: 4.4E-7 score: 29.7
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..235
None	No IPR available	PANTHER	PTHR11953:SF0	EXOSOME COMPLEX COMPONENT RRP41	coord: 1..235
None	No IPR available	CDD	cd11370	RNase_PH_RRP41	coord: 8..233 e-value: 2.86703E-143 score: 402.307
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 7..175
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	SSF55666	Ribonuclease PH domain 2-like	coord: 148..234

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25682	Cla020057	Watermelon (97103) v1	carwmB0852
Carg25682	Csa5G175730	Cucumber (Chinese Long) v2	carcuB0867
Carg25682	MELO3C011748	Melon (DHL92) v3.5.1	carmeB0841
Carg25682	ClCG02G014060	Watermelon (Charleston Gray)	carwcgB0825
Carg25682	CSPI05G08650	Wild cucumber (PI 183967)	carcpiB0887
Carg25682	Cucsa.166150	Cucumber (Gy14) v1	carcgyB0972
Carg25682	CmoCh04G002890	Cucurbita moschata (Rifu)	carcmoB1148
Carg25682	Lsi04G007960	Bottle gourd (USVL1VR-Ls)	carlsiB774
Carg25682	Cp4.1LG01g04290	Cucurbita pepo (Zucchini)	carcpeB1186
Carg25682	CsGy5G006040	Cucumber (Gy14) v2	carcgybB0841
Carg25682	MELO3C011748.2	Melon (DHL92) v3.6.1	carmedB0852
Carg25682	CsaV3_5G006110	Cucumber (Chinese Long) v3	carcucB0892
Carg25682	Cla97C02G039790	Watermelon (97103) v2	carwmbB0888
Carg25682	Bhi07G000928	Wax gourd	carwgoB0993

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25682	Silver-seed gourd	carcarB625
Carg25682	Cucurbita maxima (Rimu)	carcmaB1179
Carg25682	Cucurbita maxima (Rimu)	carcmaB1180
Carg25682	Cucurbita moschata (Rifu)	carcmoB1149
Carg25682	Cucurbita pepo (Zucchini)	carcpeB1187