Cucsa.166150 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.166150
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Exosome complex component RRP41
Location	scaffold01153 : 1438109 .. 1441431 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTACGGATCCTTTTCTCCTAAACCCTATTTCACTACCTCCGAGACGCTGCACTTCACCTCCCCACTCCTCTGCCCGGAGGCGCCGCCGTACACTACACTCTCTGCTGCCACAGACCAGCCTTTCTACAAACTTTGCCGCTGCACCCTCCCTTTTGCACTCTCTCGTCTGTCTCTCCCAGTAATCAAAGTTACAACTTTCTTAGAAACACAGCGATTCAGCCCCACCTGTACCATTCTGTTCGCCAATGGAGTTCGTGACCCCcGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGGTACTTGTTTCATTTCTCATTCTCCTGCTTTATGCTTTTTCCCTCTTGTTTGAATTATTTGCTTCTATTCCGTTCCATTTTTACTCTGTTGTTTAATTTTAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTGGGTATCTACTCTCACTTTTCTTCCTCTTTTAGCTTTTGAGATATCTGTATCGAATTCTAAGTTACTGAATATCCTATTCTGAATTAGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTATAACATCTCAGCTATTGTCGTATCTATCTCATTCAAAATGGCATGAATGCAAGAACTTGTTGACCGCTGTATTTCTTCTATTAAATCATCTGTGTGTTTATTGGAGAACTTCTGTATGGTTGGAATGAATTATTTTCTTGTATGTGTAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTTATACTTTCTTCTGGATATTCAAAGTTTCAATTCTTTATGATCGTTGGTTATGCATTGTCTGAATCTCTGATCTCTTTCAGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGTTTTTTCAGTTTTTATGTGTCTCTGTTTGATACATTTGATGATTTGATGCCATGAATGAAAGTAGTTGATTCTTGGAATAGGATTATGGTGAACATTCATATCTTAAAACATAAGAAAATTGTACCCATGAAAGGTAGCATTTATATTATTCTCTTCAGAATATGGTCATGGTAAAACTAGTAGTGTAGTAGTTCCCAGTTCAATGACTTTGCTTAGGTCTCACCAAATGGAAGGGgTTAAAAACGGATGGGAAAGAAATATGTTATTGATTCATTCATATCTATTTTGTTATCCGTTATATTAATTTATGGCATTTTTACATTCAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGGTTTTCTACAATAATCCAAGAGCTGCTTCTCTATGATTTCAAACTTTTCCTTTCCTCATTCCTAGTTTTCGTGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGATTGGAGTTATTGATTAAGTTTATCAGATAAAGCTCTTCAAATTATTAGAATATTAATTCTAGTTCAGATATTTCAATTCCATAGTCGTCTCTTTTATTGCCATCTTTTTGTGTATTTGTCATTTTCTTCAAATATTCCTCTTATTTTTGTTCTCTTTCACAAAATAGAATATGAAAGGTTTTTCTCTATACTCCTTTACGCTAAGATGTTTGGAGCCTGCAACCATATTTTTGTTCACTACCCAATCACTCAATGATGGGCCTCACTTTTGTCACCTTCTCTCCATGGCTTGTTCTCTCCATGGCTTGTTCTCTCCATGGCTTGTTCAATTGAACAGTCTTTTTAGCCCATGCCCCTAAAAAAaCAAGGTCAATGCTCTATAGGAAACTTGGTTTGAAAGATTCAAGTAGAAACAAAAATGAAGTTTGAGATATGACCAATTTCAAGCCTCTCACTGTTTGACCTCCATTTTTTGTTGTAATTACAAATTTTTAAAGCCAACACGAGCACAATTCAACAAATGAGACATCATTTTCTtCTTTTGAGGTTGGAGATTCATACCTTCATTGACATATTTATTATATTGTTTtATTTtCCTTAAAAAAGTTTTAAGTCCAGCAGAGGCTTTTTATCATCAATCAATGATGCCTCATTTCTATCTCACGCTCATGTATTTTCTGTCATCAAAGAAAGTACCCATTACTTGTGTATTTGTTCAAAGACTACATTTTAACTTACCCACAAGCTGCAACTACTGTTTTTATGGCTTGCATAATGTTCTGTCTTCAGTGATAGTGATTTGAAGCATCTAGAACTACTTGGCTTAAATGTTAGTAGAACTTGTTTTTGTTTTTTAGAAATGAAACATAATTTTCGAAAACCAAATTATTATCAAACGGGGCCTAAGCAGTGTTTTAAAAAGCTCCTTCAGGCCTCATTTGCTTTATTTTCATGAAGAATTCTTTAGACATGCCCTGGAAATTTTCTTGTGTAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGGTAATTTAGCACTCCCCCCCTCAGTTAGATTTCGCTGTATTGGACGTGAAAAACTTTCTTATATTGCTTACAACAACTAATATGGATTGGCAATTATGATATGGACAGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGGTTCACTAACTTCTACCTTTTCCTATTCTTATCCACCTTGACCTGTTTTGTGATTTTGTAATGATAACATTTCACTCATGTTGACATGATCTTGGTGCAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAAGGACTTAAAACAATTACTTGACTTCTCGTTTGTTTGTCTATTCAGATTTACTAAAAGCCATTATTGTTGAGTCAATTTTCAATATAACAGTACGCTATTTTACATAGAAAGCGCGTGGTTGGATTATTCAAATTTTGTGTTGTTTATGTGGACAGGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAGTCAAAGACTGTTTTGAGCATTCTTACCCAAAGGAAAGAGATTACAATTGTTTTAAGAGACAATGAAGTTATTGATGCCTTTTTTCCCCATCTCTCAGTTGTGAATTAATACCTGTCGCGCCCTAATCAATGTACAGAATGTGTTTTTCTA

mRNA sequence

TCCTACGGATCCTTTTCTCCTAAACCCTATTTCACTACCTCCGAGACGCTGCACTTCACCTCCCCACTCCTCTGCCCGGAGGCGCCGCCGTACACTACACTCTCTGCTGCCACAGACCAGCCTTTCTACAAACTTTGCCGCTGCACCCTCCCTTTTGCACTCTCTCGTCTGTCTCTCCCAGTAATCAAAGTTACAACTTTCTTAGAAACACAGCGATTCAGCCCCACCTGTACCATTCTGTTCGCCAATGGAGTTCGTGACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAGTCAAAGACTGTTTTGAGCATTCTTACCCAAAGGAAAGAGATTACAATTGTTTTAAGAGACAATGAAGTTATTGATGCCTTTTTTCCCCATCTCTCAGTTGTGAATTAATACCTGTCGCGCCCTAATCAATGTACAGAATGTGTTTTTCTA

Coding sequence (CDS)

ATGGAGTTCGTGACCCCcGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAG

Protein sequence

MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG*

Homology

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BLAST of Cucsa.166150 vs. Swiss-Prot
Match: RRP41_ARATH (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana GN=RRP41 PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.8e-98
Identity = 187/240 (77.92%), Postives = 206/240 (85.83%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSNQ-ALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           DVTVG LPKLDKV+LLQMDAKLP++ FE V  LA EGCKAIA  IR V+ E+TKQLEY R
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQLEYRR 239

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BLAST of Cucsa.166150 vs. Swiss-Prot
Match: EXOS4_HUMAN (Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 246.5 bits (628), Expect = 3.0e-64
Identity = 119/235 (50.64%), Postives = 173/235 (73.62%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +++
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ 235
            + +  LP   ++ LL+MDA+L  D  E V+E A +  + + T +  V+ +H ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238

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BLAST of Cucsa.166150 vs. Swiss-Prot
Match: EXOS4_MOUSE (Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 246.1 bits (627), Expect = 3.9e-64
Identity = 119/235 (50.64%), Postives = 173/235 (73.62%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ ++S
Sbjct: 4   LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ 235
            + +  LP   ++ LL+MD++L  D  E V+E A +  + + T +  V+ +H ++
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQE 238

[Close]

BLAST of Cucsa.166150 vs. Swiss-Prot
Match: EXOS4_BOVIN (Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 245.7 bits (626), Expect = 5.0e-64
Identity = 119/235 (50.64%), Postives = 172/235 (73.19%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +++
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ 235
            + +  LP   ++ LL+MDA+L  D  E V+E A    + + T +  V+ +H ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQE 238

[Close]

BLAST of Cucsa.166150 vs. Swiss-Prot
Match: RRP41_THEKO (Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rrp41 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.1e-54
Identity = 112/241 (46.47%), Postives = 156/241 (64.73%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ++ +   G R DGR+  ELR ++ E+G +  A+GSA  E G  KVLAAVYGPRE+  K  
Sbjct: 8   LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR  +E  +L H+ PR+ ID+F
Sbjct: 68  QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 127

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           +++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  D
Sbjct: 128 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 187

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD 240
           V V  +P  + +TLLQMD  L  D F + + LAI+G KA+    R  + E   ++    +
Sbjct: 188 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQEVE 247

Query: 241 G 242
           G
Sbjct: 248 G 247

[Close]

BLAST of Cucsa.166150 vs. TrEMBL
Match: A0A0A0KNI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175730 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 2.6e-131
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD 240
           VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Cucsa.166150 vs. TrEMBL
Match: B9SWZ0_RICCO (Exosome complex exonuclease RRP41, putative OS=Ricinus communis GN=RCOM_0490080 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 6.7e-116
Identity = 210/239 (87.87%), Postives = 229/239 (95.82%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V+PEGLR DGRRP E+R++RA+IGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+ +QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI+
Sbjct: 61  QIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           VTVG LPKLDKVTLLQMDAKLPID FE+VM+LA+EGCKAIA YIR ++LE+TKQLEY R
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREILLENTKQLEYRR 239

[Close]

BLAST of Cucsa.166150 vs. TrEMBL
Match: A0A0D2P6V3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105300 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.2e-115
Identity = 210/239 (87.87%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V+PEGLR DGRRP E+R++RAEIG V+KANGSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAEIGTVAKANGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNY+EDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYIEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           VTVG LPKLDKVTLLQMDAKLP+D+FE+VM LAIEGCKAIA YIR V+LE+TKQLEY R
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPVDIFENVMGLAIEGCKAIANYIREVLLENTKQLEYRR 239

[Close]

BLAST of Cucsa.166150 vs. TrEMBL
Match: A0A0B0P9E4_GOSAR (Exosome complex component RRP41 OS=Gossypium arboreum GN=F383_04343 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 2.0e-115
Identity = 210/239 (87.87%), Postives = 227/239 (94.98%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V+PEGLR DGRRP E+R++RAEIG V+KANGSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAEIGTVAKANGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNY+EDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYIEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           VTVG LPKLDKVTLLQMDAKLP+D+FE VM LAIEGCKAIA YIR V+LE+TKQLEY R
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPVDIFETVMGLAIEGCKAIANYIREVLLENTKQLEYRR 239

[Close]

BLAST of Cucsa.166150 vs. TrEMBL
Match: A5BIU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01420 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.6e-115
Identity = 210/239 (87.87%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++R EIGAV+KA+GSA FEMGNTKV+AAVYGPREV+N+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           VTVG LPKLDKVTLLQMDAKLP+D+FE+VM+LAIEGCKAIA YIR V+LE+TKQLEY R
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREVLLENTKQLEYRR 239

[Close]

BLAST of Cucsa.166150 vs. TAIR10
Match: AT3G61620.1 (AT3G61620.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 360.1 bits (923), Expect = 1.0e-99
Identity = 187/240 (77.92%), Postives = 206/240 (85.83%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSNQ-ALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           DVTVG LPKLDKV+LLQMDAKLP++ FE V  LA EGCKAIA  IR V+ E+TKQLEY R
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQLEYRR 239

[Close]

BLAST of Cucsa.166150 vs. TAIR10
Match: AT4G27490.1 (AT4G27490.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-22
Identity = 62/219 (28.31%), Postives = 110/219 (50.23%), Query Frame = 1


Query: 10  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVR 69
           R DGR   + R    + GAVS A+GSA  E GNTKV+ +V+GPRE   K+   S+   + 
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 93

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGG 129
           C  +  NF++    +         E S ++ + +E  I+    P++ +D+F  VL++ G 
Sbjct: 94  CNVSYTNFASPTLGQGTD----HKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 153

Query: 130 TRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKL 189
             S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P  
Sbjct: 154 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 213

Query: 190 DKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVM 229
            ++T L +  +       + M+L ++    +   +R+ +
Sbjct: 214 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCL 247

[Close]

BLAST of Cucsa.166150 vs. TAIR10
Match: AT3G46210.1 (AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-16
Identity = 57/188 (30.32%), Postives = 93/188 (49.47%), Query Frame = 1


Query: 10  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVR 69
           R+DGR P +LR +      + + +GSA +  G+TKVLAAVYGP+    K++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEK----- 64

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CILTHLMPRSQIDIFVQVLQADG 129
                A F    + +  +  +   E  +++++T++  C+LT + P +   + +QV+  DG
Sbjct: 65  -----ACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVHDDG 124

Query: 130 GTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PD 189
                 INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+
Sbjct: 125 SLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPN 181

[Close]

BLAST of Cucsa.166150 vs. TAIR10
Match: AT5G14580.1 (AT5G14580.1 polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-11
Identity = 67/242 (27.69%), Postives = 109/242 (45.04%), Query Frame = 1


Query: 7   EGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVY--GPREVQNKSQQMS- 66
           +G R DGR   E+R +  E   +   +GSA+F  G+T+VL  V    P E Q+    +  
Sbjct: 361 DGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGP 420

Query: 67  NQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ-----ID 126
            +      Y+   + T +  ++   +RR      V   T+ E  L  ++P  +     I 
Sbjct: 421 PKKRFMLHYSFPPYCTNEVGKRGGLNRRE-----VGHGTLAEKALLAVLPPEEAFPYTIR 480

Query: 127 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYL-----NSNALLDLNYVE 186
           I  +V+ +DG T  A +   ++AL DAGIP+R  V   S G +     +S  + D   V 
Sbjct: 481 INSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVT 540

Query: 187 DSAGGP----DVTVGFLPKLDKVTLLQMDAK---LPIDVFEDVMELAIEGCKAIATYI-R 228
           D  G      D+        D VT +Q+D K   +P+D+  + +E A E    I  ++ R
Sbjct: 541 DILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER 597

[Close]

BLAST of Cucsa.166150 vs. TAIR10
Match: AT3G03710.1 (AT3G03710.1 polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-10
Identity = 61/231 (26.41%), Postives = 102/231 (44.16%), Query Frame = 1


Query: 8   GLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAV-YGPREVQNKSQQMSNQA 67
           G R DGR   E+R + +  G + +A+GS +F  G T+ LA V  G +++  +   +    
Sbjct: 445 GKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSD 504

Query: 68  LVR---CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ-----ID 127
             +    +YT    S G+  R     RR      +   T+ E  L  ++P        I 
Sbjct: 505 EYKRFYLQYTFPPSSVGEVGRIGAPSRRE-----IGHGTLAERALETILPSDDDFPYTIR 564

Query: 128 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYL----------NSNALLD 187
           +   V++++G +  A +    LAL DAG+P++  V   + G +          +   L D
Sbjct: 565 VESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSD 624

Query: 188 LNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKA 220
           +   ED++G  D  V      D VT  QMD K+   +  ++ME A+   KA
Sbjct: 625 ITGAEDASGDMDFKVA--GNEDGVTAFQMDIKVG-GITLEIMEKALIQAKA 667

[Close]

BLAST of Cucsa.166150 vs. NCBI nr
Match: gi|449451735|ref|XP_004143616.1| (PREDICTED: exosome complex component RRP41 [Cucumis sativus])

HSP 1 Score: 476.1 bits (1224), Expect = 3.7e-131
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD 240
           VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Cucsa.166150 vs. NCBI nr
Match: gi|659090181|ref|XP_008445878.1| (PREDICTED: exosome complex component RRP41 [Cucumis melo])

HSP 1 Score: 467.6 bits (1202), Expect = 1.3e-128
Identity = 236/241 (97.93%), Postives = 239/241 (99.17%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRD 240
           VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRD
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRD 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Cucsa.166150 vs. NCBI nr
Match: gi|255579328|ref|XP_002530509.1| (PREDICTED: exosome complex component RRP41 homolog [Ricinus communis])

HSP 1 Score: 424.9 bits (1091), Expect = 9.7e-116
Identity = 210/239 (87.87%), Postives = 229/239 (95.82%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V+PEGLR DGRRP E+R++RA+IGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+ +QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI+
Sbjct: 61  QIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           VTVG LPKLDKVTLLQMDAKLPID FE+VM+LA+EGCKAIA YIR ++LE+TKQLEY R
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREILLENTKQLEYRR 239

[Close]

BLAST of Cucsa.166150 vs. NCBI nr
Match: gi|1009142620|ref|XP_015888820.1| (PREDICTED: exosome complex component RRP41 homolog [Ziziphus jujuba])

HSP 1 Score: 424.9 bits (1091), Expect = 9.7e-116
Identity = 208/239 (87.03%), Postives = 231/239 (96.65%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V+PEGLR DGRRP E+R++R EIGAV+KA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QM++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CI+THLMPRSQIDIF
Sbjct: 61  QMNDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIMTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNS ALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSSGYLNSTALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           VTVGFLPKLDKVTLLQMDAKLP+D+FE+VM+LAIEGCKA+A YIR ++LE+TKQLEY R
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPLDIFENVMQLAIEGCKAVANYIRELLLENTKQLEYRR 239

[Close]

BLAST of Cucsa.166150 vs. NCBI nr
Match: gi|823187058|ref|XP_012490062.1| (PREDICTED: exosome complex component RRP41 [Gossypium raimondii])

HSP 1 Score: 424.1 bits (1089), Expect = 1.7e-115
Identity = 210/239 (87.87%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V+PEGLR DGRRP E+R++RAEIG V+KANGSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAEIGTVAKANGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNY+EDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYIEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR 240
           VTVG LPKLDKVTLLQMDAKLP+D+FE+VM LAIEGCKAIA YIR V+LE+TKQLEY R
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPVDIFENVMGLAIEGCKAIANYIREVLLENTKQLEYRR 239

The following BLAST results are available for this feature:

BLAST of Cucsa.166150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP41_ARATH	1.8e-98	77.92	Exosome complex component RRP41 homolog OS=Arabidopsis thaliana GN=RRP41 PE=1 SV...	[more]
EXOS4_HUMAN	3.0e-64	50.64	Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3	[more]
EXOS4_MOUSE	3.9e-64	50.64	Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=1 SV=3	[more]
EXOS4_BOVIN	5.0e-64	50.64	Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3	[more]
RRP41_THEKO	8.1e-54	46.47	Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-91...	[more]

BLAST of Cucsa.166150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNI9_CUCSA	2.6e-131	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175730 PE=4 SV=1	[more]
B9SWZ0_RICCO	6.7e-116	87.87	Exosome complex exonuclease RRP41, putative OS=Ricinus communis GN=RCOM_0490080 ...	[more]
A0A0D2P6V3_GOSRA	1.2e-115	87.87	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105300 PE=4 SV=1	[more]
A0A0B0P9E4_GOSAR	2.0e-115	87.87	Exosome complex component RRP41 OS=Gossypium arboreum GN=F383_04343 PE=4 SV=1	[more]
A5BIU1_VITVI	2.6e-115	87.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01420 PE=4 SV=...	[more]

BLAST of Cucsa.166150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61620.1	1.0e-99	77.92	3'-5'-exoribonuclease family protein	[more]
AT4G27490.1	3.0e-22	28.31	3'-5'-exoribonuclease family protein	[more]
AT3G46210.1	3.2e-16	30.32	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G14580.1	3.1e-11	27.69	polyribonucleotide nucleotidyltransferase, putative	[more]
AT3G03710.1	1.5e-10	26.41	polyribonucleotide nucleotidyltransferase, putative	[more]

BLAST of Cucsa.166150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451735\|ref\|XP_004143616.1\|	3.7e-131	100.00	PREDICTED: exosome complex component RRP41 [Cucumis sativus]	[more]
gi\|659090181\|ref\|XP_008445878.1\|	1.3e-128	97.93	PREDICTED: exosome complex component RRP41 [Cucumis melo]	[more]
gi\|255579328\|ref\|XP_002530509.1\|	9.7e-116	87.87	PREDICTED: exosome complex component RRP41 homolog [Ricinus communis]	[more]
gi\|1009142620\|ref\|XP_015888820.1\|	9.7e-116	87.03	PREDICTED: exosome complex component RRP41 homolog [Ziziphus jujuba]	[more]
gi\|823187058\|ref\|XP_012490062.1\|	1.7e-115	87.87	PREDICTED: exosome complex component RRP41 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001247	ExoRNase_PH_dom1
IPR015847	ExoRNase_PH_dom2
IPR020568	Ribosomal_S5_D2-typ_fold
IPR027408	PNPase/RNase_PH_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0009022	tRNA nucleotidyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.166150.1	Cucsa.166150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 18..148 score: 2.1
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 151..215 score: 4.
IPR015847	Exoribonuclease, phosphorolytic domain 2	unknown	SSF55666	Ribonuclease PH domain 2-like	coord: 148..234 score: 4.84
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 6..175 score: 1.57
IPR027408	PNPase/RNase PH domain	GENE3D	G3DSA:3.30.230.70		coord: 8..221 score: 9.4
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..239 score: 4.3E
None	No IPR available	PANTHER	PTHR11953:SF0	EXOSOME COMPLEX COMPONENT RRP41	coord: 1..239 score: 4.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.166150	Cla020057	Watermelon (97103) v1	cgywmB310
Cucsa.166150	Csa5G175730	Cucumber (Chinese Long) v2	cgycuB251
Cucsa.166150	MELO3C011748	Melon (DHL92) v3.5.1	cgymeB290
Cucsa.166150	ClCG02G014060	Watermelon (Charleston Gray)	cgywcgB290
Cucsa.166150	CSPI05G08650	Wild cucumber (PI 183967)	cgycpiB258
Cucsa.166150	CmoCh04G002890	Cucurbita moschata (Rifu)	cgycmoB0474
Cucsa.166150	Lsi04G007960	Bottle gourd (USVL1VR-Ls)	cgylsiB276
Cucsa.166150	Cp4.1LG01g04290	Cucurbita pepo (Zucchini)	cgycpeB0457
Cucsa.166150	MELO3C011748.2	Melon (DHL92) v3.6.1	cgymedB285
Cucsa.166150	CsaV3_5G006110	Cucumber (Chinese Long) v3	cgycucB264
Cucsa.166150	Cla97C02G039790	Watermelon (97103) v2	cgywmbB290
Cucsa.166150	Bhi07G000928	Wax gourd	cgywgoB340
Cucsa.166150	Carg25682	Silver-seed gourd	carcgyB0972

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.166150	Wax gourd	cgywgoB338
Cucsa.166150	Cucurbita maxima (Rimu)	cgycmaB0471
Cucsa.166150	Cucurbita maxima (Rimu)	cgycmaB0472
Cucsa.166150	Cucurbita moschata (Rifu)	cgycmoB0475
Cucsa.166150	Cucurbita pepo (Zucchini)	cgycpeB0458
Cucsa.166150	Silver-seed gourd	carcgyB0963