CsGy5G006030 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G006030
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionThioredoxin-like protein YLS8
LocationChr5 : 4019679 .. 4020925 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTAGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGGTAAACTTCATTTTTGAATCCCTAACTCTTCTACTTTTTCTCTCCATTTCACTATTGTTGTGCTCCTTCTGTTTGCTGATCGAAAAACCAAGGAGGAGAAAAAAAATTGTTTCATTGTGGTTAAATCTAATTTATTTAACTGCGAGTTAAAATTGTTGACTAAATTACTGGTGAATAGGAATGAAACAGACTGAAGAAACCCTGGAGCCCATTTTCCGTCCTTCAACCAACCTCCTATGATTTGGGCCGAAGAGTTGTTTGTGTATATCTCTCTCTCAACTTCCTTTTTCTTCTTCTTGCTTTTACTGCAACTGAATTTGTACTTTAATGTCTTTTCATTTCACAAAACATGTCACTTGTTTTAGTTCTTCAAGTTTAGATGTCTTGGTTGGTTAATGTTTTTCTTGTTCCCTTTCTTCTCATCTGGGTTAGAGCTTGGAACATTCACTGCTTGAATTGATCATGACTTCTTAACTTGAACAAGTGTAAAATTTCAATTTTTTGGGCAGTTCTAGTGGTTCTATGTTAGATTTCATACCTTTCTTTGAGTTTCCATTTATCTCTTGGGTCTTATTTTGTTTAACTAGGGCCCTTCTTAGAGTTGCTGAACTTTCTTGGGTCGTATTATTCCATTTATTCTTAATGGAAGCTTAGCGTTTTGTTTTATTTTATTTTTTGAAAAACCTTCTTCTATTCATTTCTAATTTGTCCTATCTACTTGTTTGCCTGTGCTCACTTCTCTGTTATCTTCCGTTGTAAGTAGGATTGTTTATCATTTTTCAAGATGCTTGATCTGATTGATATCTTTTTTGATGTAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGACCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

mRNA sequence

ATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTAGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGACCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

Coding sequence (CDS)

ATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTAGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGACCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

Protein sequence

MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Homology
[Close]
BLAST of CsGy5G006030 vs. NCBI nr
Match: XP_004143618.1 (PREDICTED: thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus] >XP_022139324.1 thioredoxin-like protein YLS8 isoform X2 [Momordica charantia] >XP_022999573.1 thioredoxin-like protein YLS8 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 3.5e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. NCBI nr
Match: XP_008361907.1 (PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica] >XP_008445881.1 PREDICTED: thioredoxin-like protein YLS8 [Cucumis melo] >XP_009351744.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Pyrus x bretschneideri] >XP_010067005.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Eucalyptus grandis] >XP_011002245.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Populus euphratica] >XP_017971313.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Theobroma cacao] >XP_024460640.1 thioredoxin-like protein YLS8 isoform X2 [Populus trichocarpa])

HSP 1 Score: 296.6 bits (758), Expect = 4.5e-77
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. NCBI nr
Match: XP_007223713.1 (thioredoxin-like protein YLS8 isoform X2 [Prunus persica] >ONI32103.1 hypothetical protein PRUPE_1G348600 [Prunus persica])

HSP 1 Score: 295.4 bits (755), Expect = 1.0e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVV+IRFGHDWDDTCMQMDEVLASVAET+KNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVVIRFGHDWDDTCMQMDEVLASVAETLKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. NCBI nr
Match: XP_009797554.1 (PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Nicotiana sylvestris] >XP_016482885.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Nicotiana tabacum] >XP_019267702.1 PREDICTED: thioredoxin-like protein YLS8 [Nicotiana attenuata] >XP_022874393.1 thioredoxin-like protein YLS8 [Olea europaea var. sylvestris] >OIT34217.1 thioredoxin-like protein yls8 [Nicotiana attenuata])

HSP 1 Score: 295.4 bits (755), Expect = 1.0e-76
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+VIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. NCBI nr
Match: XP_022957086.1 (thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_023543236.1 thioredoxin-like protein YLS8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 1.0e-76
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. TAIR10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 292.7 bits (748), Expect = 1.2e-79
Identity = 138/142 (97.18%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. TAIR10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 95.5 bits (236), Expect = 2.8e-20
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + V+++RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

[Close]
BLAST of CsGy5G006030 vs. Swiss-Prot
Match: sp|Q9FE62|YLS8_ARATH (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.1e-78
Identity = 138/142 (97.18%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. Swiss-Prot
Match: sp|P83876|TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. Swiss-Prot
Match: sp|P83877|TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. Swiss-Prot
Match: sp|P87215|DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.3e-61
Identity = 106/142 (74.65%), Postives = 126/142 (88.73%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ER+V+IRFG D D+ C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDIIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

[Close]
BLAST of CsGy5G006030 vs. Swiss-Prot
Match: sp|Q75BD8|DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DIB1 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.5e-51
Identity = 91/138 (65.94%), Postives = 112/138 (81.16%), Query Frame = 0 

Query: 2   SYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+ EEER+V+IRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDIIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

[Close]
BLAST of CsGy5G006030 vs. TrEMBL
Match: tr|A0A1S3BEF1|A0A1S3BEF1_CUCME (thioredoxin-like protein YLS8 OS=Cucumis melo OX=3656 GN=LOC103488767 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.0e-77
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. TrEMBL
Match: tr|M5XFL9|M5XFL9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G348600 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 6.7e-77
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVV+IRFGHDWDDTCMQMDEVLASVAET+KNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVVIRFGHDWDDTCMQMDEVLASVAETLKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. TrEMBL
Match: tr|A0A1S4B1S1|A0A1S4B1S1_TOBAC (thioredoxin-like protein YLS8 isoform X2 OS=Nicotiana tabacum OX=4097 GN=LOC107803633 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 6.7e-77
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+VIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. TrEMBL
Match: tr|A0A1U7YE85|A0A1U7YE85_NICSY (thioredoxin-like protein YLS8 isoform X2 OS=Nicotiana sylvestris OX=4096 GN=LOC104243966 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 6.7e-77
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+VIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of CsGy5G006030 vs. TrEMBL
Match: tr|A0A2G3CEM3|A0A2G3CEM3_CAPCH (Thioredoxin-like protein 4A OS=Capsicum chinense OX=80379 GN=BC332_12883 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+VIIRFGHDWDDTCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

The following BLAST results are available for this feature:
BLAST of CsGy5G006030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143618.13.5e-77100.00PREDICTED: thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus] >XP_022139... [more]
XP_008361907.14.5e-7799.30PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica] >XP_008445... [more]
XP_007223713.11.0e-7697.89thioredoxin-like protein YLS8 isoform X2 [Prunus persica] >ONI32103.1 hypothetic... [more]
XP_009797554.11.0e-7698.59PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Nicotiana sylvestris] >XP_0... [more]
XP_022957086.11.0e-7699.30thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_023543236.1 thioredoxin-l... [more]
BLAST of CsGy5G006030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08290.11.2e-7997.18mRNA splicing factor, thioredoxin-like U5 snRNP[more]
AT3G24730.12.8e-2037.96mRNA splicing factor, thioredoxin-like U5 snRNP[more]
BLAST of CsGy5G006030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FE62|YLS8_ARATH2.1e-7897.18Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=2 SV=1[more]
sp|P83876|TXN4A_HUMAN1.5e-7185.92Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1[more]
sp|P83877|TXN4A_MOUSE1.5e-7185.92Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1[more]
sp|P87215|DIMI_SCHPO5.3e-6174.65Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2... [more]
sp|Q75BD8|DIB1_ASHGO8.5e-5165.94Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F... [more]
BLAST of CsGy5G006030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BEF1|A0A1S3BEF1_CUCME3.0e-7799.30thioredoxin-like protein YLS8 OS=Cucumis melo OX=3656 GN=LOC103488767 PE=4 SV=1[more]
tr|M5XFL9|M5XFL9_PRUPE6.7e-7797.89Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G348600 PE=4 SV=1[more]
tr|A0A1S4B1S1|A0A1S4B1S1_TOBAC6.7e-7798.59thioredoxin-like protein YLS8 isoform X2 OS=Nicotiana tabacum OX=4097 GN=LOC1078... [more]
tr|A0A1U7YE85|A0A1U7YE85_NICSY6.7e-7798.59thioredoxin-like protein YLS8 isoform X2 OS=Nicotiana sylvestris OX=4096 GN=LOC1... [more]
tr|A0A2G3CEM3|A0A2G3CEM3_CAPCH1.5e-7697.89Thioredoxin-like protein 4A OS=Capsicum chinense OX=80379 GN=BC332_12883 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0046540U4/U6 x U5 tri-snRNP complex
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR004123Dim1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G006030.1CsGy5G006030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..136
e-value: 6.8E-97
score: 337.9
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..136
e-value: 4.6E-67
score: 223.8
IPR004123Dim1 familyPIRSFPIRSF017199Dim1coord: 1..142
e-value: 1.1E-74
score: 246.6
IPR004123Dim1 familyPANTHERPTHR12052THIOREDOXIN-LIKE PROTEN 4A, 4Bcoord: 1..141
IPR004123Dim1 familyCDDcd02954DIM1coord: 10..123
e-value: 2.91334E-74
score: 218.703
NoneNo IPR availableGENE3DG3DSA:3.40.30.10coord: 1..141
e-value: 3.3E-75
score: 252.3
NoneNo IPR availablePANTHERPTHR12052:SF5THIOREDOXIN-LIKE PROTEIN 4Acoord: 1..141
IPR036249Thioredoxin-like superfamilySUPERFAMILYSSF52833Thioredoxin-likecoord: 4..137