CmoCh04G002900 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G002900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Spliceosomal U5 snRNP-specific 15 kDa protein, putative
Location	Cmo_Chr04 : 1454527 .. 1456855 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCGCGTGGTTGCGTTACTGTGTTAGAGAGAGAGCGAGAGAGAAGAGAGACAGAGAGAGGAGAGAGATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGGTCTTTCTCTTTCCCTACTTCACAATTATTGTTGTTCATCATCAGATTTAATCATAATCCTTTTGTGTATATCTCTCCCTACCCCCTGTTTCTTCTTGTTGCTTCTACTGAACTGATATTTGTTCTGTTTCGGCTTTTAATTTCATAATATAAGACTCATTTTTTTCAGTTCTTGGAGTCTATCAAGTCTCGGTCGGTCAAGGATTTTTCTTTTTCTATTTTTGGGTTTTCTTTAATCTGGGCTTGATTTTTGTATGTATGCTTGCCTCAATTGACCAATTTTCTGAGTTTTATGTGCAATTTTTAGAATTGGTTGCTCGATCTTCTCTGTTATCATCATCTGTTCTGTTGCAATTGTGCTCCTCGCTTTCTATAATCATGCTTTCCTATGTATTTGAGCACATCATTCCTATTATGTACCTGAAATGAAGTTATTAAACGACTTTCCTATTGATCTTTAATAATCCAGTCTTTGATTGTTGTTGCTGTATGCACGAGGTTTTCCGTGCTAGCGGGATGATCAAAGTTTGAGTTCATGGGCCATCTAGACTCTTTTTTGGTGTATGATTTGTTTAGAGTCTTTTCCCCCTTGTTTTTGTTGCACGGAGCCACAATCCTTCCATCGTGAATGTTTAAAGTCATGAAGATTTTTTCACATAATTTGTTTGGTTTACTCTACGTGATCATCTTTATAGTATTTTGAGATGTTATTATCTGATTGGTATGTTTTTAATATAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATAAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGACGTTCTGCTGCTTCTGCAAGTTCTTATTGATCTTAAATTTTAGAGATCGCGTCTCGAAAATGTGTACTCTATGACATTATTCGCTCGTGAAAAGGATATGGTTTATTTTGGATGTCATTGTGTGCCATGACTTCTCAAAACATTTGATCACTGTTGGACCTCTGATGAGGGAATATAACTGTTTATGGTAAACAAGTCTTTTGATCAGGTATGTTTTGGTTGAATAAGTTGTTTTCCGATCTATTGATGATGTTATTTGATTACAATAGTTGGTATGAAAATGAACACTGAACTGCCTGGTTTATGAACTAAAAGGGTATGAACACTGAACTTCTAATACACTTTGTTTCATAATTCTGTCATTTGTGATCACATATCCATTTTTTTTCTGGTATAACTAATAGCCATACATGCAGCTTCTATTTTCTGGAAAATTTTGCTCTGTAATTCTTCAATGCCTAATCTTTCTTCCAATCATTTCGACCATTCCTATCACTGCTATTCCAATGACATACCAAGTGACTCCTCTTTGTATAAGCTGCATCCAATGACTATTAACAAACTCCAGTGCCACAGAACCTCCGATGTGCTCCTTCAAGCCGCTGGCACCATCATCTGTCACCATTTGCTGGATTACTGTGGTTGCAACTATCGATATCAAGACTGGTAATGCCAATCTCATGGGGCTAGTATGATCACCACCACCCACTTCAAAATCAAGGTCTTTTGATTCTTTGCTACGTTTGGTCTCCACCCTTGGATTTGAGATTGTGCTTATTGGAGTTTGAGTTGAGACTGGAAGTGCAAGGGTGGTCGGAACCCAGTAATCGTCCGTTATGTATTTTGTTGTAGTTCCATTTCTGTCTTCGGTTTTTGCCTTGAGTTGTTTCCTTGCAGTAATAGCAGCTTGAAGTTTGTTGATTTGTGGTGTGGATTTGTTGACGACGAGCGTCAGGTTTTGACTGTGTTTTGATCCGGTGGCTGTCTGCCAAAATAAGCAATTTGAGATTGATCTGATAGCTTGAATTGCAGACAACTGTGCTTTGTTCTCGAAGGTTGTCCCCTGATAAACAATCATACAACTCGATCACGG

mRNA sequence

CTGCGCGTGGTTGCGTTACTGTGTTAGAGAGAGAGCGAGAGAGAAGAGAGACAGAGAGAGGAGAGAGATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATAAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGACGTTCTGCTGCTTCTGCAAGTTCTTATTGATCTTAAATTTTAGAGATCGCGTCTCGAAAATGTGTACTCTATGACATTATTCGCTCGTGAAAAGGATATGGTTTATTTTGGATGTCATTGTGTGCCATGACTTCTCAAAACATTTGATCACTGTTGGACCTCTGATGAGGGAATATAACTGTTTATGGTAAACAAGTCTTTTGATCAGGTATGTTTTGGTTGAATAAGTTGTTTTCCGATCTATTGATGATGTTATTTGATTACAATAGTTGGTATGAAAATGAACACTGAACTGCCTGGTTTATGAACTAAAAGGGTATGAACACTGAACTTCTAATACACTTTGTTTCATAATTCTGTCATTTGTGATCACATATCCATTTTTTTTCTGGTATAACTAATAGCCATACATGCAGCTTCTATTTTCTGGAAAATTTTGCTCTGTAATTCTTCAATGCCTAATCTTTCTTCCAATCATTTCGACCATTCCTATCACTGCTATTCCAATGACATACCAAGTGACTCCTCTTTGTATAAGCTGCATCCAATGACTATTAACAAACTCCAGTGCCACAGAACCTCCGATGTGCTCCTTCAAGCCGCTGGCACCATCATCTGTCACCATTTGCTGGATTACTGTGGTTGCAACTATCGATATCAAGACTGGTAATGCCAATCTCATGGGGCTAGTATGATCACCACCACCCACTTCAAAATCAAGGTCTTTTGATTCTTTGCTACGTTTGGTCTCCACCCTTGGATTTGAGATTGTGCTTATTGGAGTTTGAGTTGAGACTGGAAGTGCAAGGGTGGTCGGAACCCAGTAATCGTCCGTTATGTATTTTGTTGTAGTTCCATTTCTGTCTTCGGTTTTTGCCTTGAGTTGTTTCCTTGCAGTAATAGCAGCTTGAAGTTTGTTGATTTGTGGTGTGGATTTGTTGACGACGAGCGTCAGGTTTTGACTGTGTTTTGATCCGGTGGCTGTCTGCCAAAATAAGCAATTTGAGATTGATCTGATAGCTTGAATTGCAGACAACTGTGCTTTGTTCTCGAAGGTTGTCCCCTGATAAACAATCATACAACTCGATCACGG

Coding sequence (CDS)

ATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATAAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Homology

[Close]

BLAST of CmoCh04G002900 vs. Swiss-Prot
Match: YLS8_ARATH (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 6.1e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-70
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE ++IIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-70
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE ++IIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.2e-61
Identity = 108/142 (76.06%), Postives = 126/142 (88.73%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE I+IIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

[Close]

BLAST of CmoCh04G002900 vs. Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51
Identity = 93/138 (67.39%), Postives = 113/138 (81.88%), Query Frame = 1


Query: 2   SYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+TEEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE I+IIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

[Close]

BLAST of CmoCh04G002900 vs. TrEMBL
Match: F8RWT4_HEVBR (Mitosis protein YLS8 OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. TrEMBL
Match: A0A0D2VZ16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G134400 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 66  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 125

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 126 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 185

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 186 RGARKGRGLVIAPKDYSTKYRY 207

[Close]

BLAST of CmoCh04G002900 vs. TrEMBL
Match: A0A0B0MLM5_GOSAR (Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. TrEMBL
Match: A0A0A0LLZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. TrEMBL
Match: V4N5J9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014963mg PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. TAIR10
Match: AT5G08290.1 (AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 291.2 bits (744), Expect = 3.5e-79
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. TAIR10
Match: AT3G24730.1 (AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FI+++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

[Close]

BLAST of CmoCh04G002900 vs. NCBI nr
Match: gi|1021571838|ref|XP_016177040.1| (PREDICTED: thioredoxin-like protein YLS8 [Arachis ipaensis])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. NCBI nr
Match: gi|763810468|gb|KJB77370.1| (hypothetical protein B456_012G134400 [Gossypium raimondii])

HSP 1 Score: 292.4 bits (747), Expect = 4.4e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 66  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 125

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 126 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 185

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 186 RGARKGRGLVIAPKDYSTKYRY 207

[Close]

BLAST of CmoCh04G002900 vs. NCBI nr
Match: gi|449460616|ref|XP_004148041.1| (PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 4.4e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of CmoCh04G002900 vs. NCBI nr
Match: gi|629099303|gb|KCW65068.1| (hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis])

HSP 1 Score: 292.0 bits (746), Expect = 5.7e-76
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 176 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 235

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+I+ETVY
Sbjct: 236 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 295

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 296 RGARKGRGLVIAPKDYSTKYRY 317

[Close]

BLAST of CmoCh04G002900 vs. NCBI nr
Match: gi|224094081|ref|XP_002310072.1| (hypothetical protein POPTR_0007s07660g [Populus trichocarpa])

HSP 1 Score: 292.0 bits (746), Expect = 5.7e-76
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+I+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

The following BLAST results are available for this feature:

BLAST of CmoCh04G002900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS8_ARATH	6.1e-78	97.89	Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1	[more]
TXN4A_HUMAN	1.6e-70	85.21	Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1	[more]
TXN4A_MOUSE	1.6e-70	85.21	Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1	[more]
DIMI_SCHPO	5.2e-61	76.06	Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=d...	[more]
DIB1_ASHGO	2.9e-51	67.39	Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F...	[more]

BLAST of CmoCh04G002900 vs. TrEMBL


Match Name	E-value	Identity	Description
F8RWT4_HEVBR	3.1e-76	98.59	Mitosis protein YLS8 OS=Hevea brasiliensis PE=2 SV=1	[more]
A0A0D2VZ16_GOSRA	3.1e-76	98.59	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G134400 PE=4 SV=1	[more]
A0A0B0MLM5_GOSAR	3.1e-76	98.59	Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1	[more]
A0A0A0LLZ8_CUCSA	3.1e-76	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1	[more]
V4N5J9_EUTSA	3.1e-76	98.59	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014963mg PE=4 SV=1	[more]

BLAST of CmoCh04G002900 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08290.1	3.5e-79	97.89	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]
AT3G24730.1	1.8e-19	37.23	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]

BLAST of CmoCh04G002900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021571838\|ref\|XP_016177040.1\|	1.2e-76	99.30	PREDICTED: thioredoxin-like protein YLS8 [Arachis ipaensis]	[more]
gi\|763810468\|gb\|KJB77370.1\|	4.4e-76	98.59	hypothetical protein B456_012G134400 [Gossypium raimondii]	[more]
gi\|449460616\|ref\|XP_004148041.1\|	4.4e-76	98.59	PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]	[more]
gi\|629099303\|gb\|KCW65068.1\|	5.7e-76	97.89	hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis]	[more]
gi\|224094081\|ref\|XP_002310072.1\|	5.7e-76	97.89	hypothetical protein POPTR_0007s07660g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004123	Dim1
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005681	spliceosomal complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016197	endosomal transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0007067	mitotic nuclear division
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0009536	plastid
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002900.1	CmoCh04G002900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004123	Dim1 family	PIR	PIRSF017199	Dim1	coord: 1..142 score: 1.1
IPR004123	Dim1 family	PANTHER	PTHR12052	THIOREDOXIN-LIKE PROTEN 4A, 4B	coord: 1..142 score: 3.5E
IPR004123	Dim1 family	PFAM	PF02966	DIM1	coord: 4..136 score: 7.2
IPR004123	Dim1 family	SMART	SM01410	DIM1_2	coord: 4..136 score: 1.2
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 1..142 score: 2.5
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 4..137 score: 3.92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G002900	Cucsa.166160	Cucumber (Gy14) v1	cgycmoB0474
CmoCh04G002900	CmaCh04G002810	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G002900	CmaCh04G012520	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G002900	Cla020056	Watermelon (97103) v1	cmowmB720
CmoCh04G002900	Csa5G175720	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G002900	MELO3C011749	Melon (DHL92) v3.5.1	cmomeB646
CmoCh04G002900	ClCG02G014070	Watermelon (Charleston Gray)	cmowcgB644
CmoCh04G002900	CSPI05G08640	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G002900	Cp4.1LG01g10230	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G002900	MELO3C011749.2	Melon (DHL92) v3.6.1	cmomedB733
CmoCh04G002900	CsaV3_5G006100	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G002900	Cla97C02G039800	Watermelon (97103) v2	cmowmbB714
CmoCh04G002900	Bhi07G000926	Wax gourd	cmowgoB0910
CmoCh04G002900	CsGy5G006030	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G002900	Carg25683	Silver-seed gourd	carcmoB1148
CmoCh04G002900	Carg02055	Silver-seed gourd	carcmoB1139

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G002900	CmoCh04G013260	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G002900	Cucumber (Chinese Long) v3	cmocucB0837
CmoCh04G002900	Cucurbita moschata (Rifu)	cmocmoB465
CmoCh04G002900	Cucurbita maxima (Rimu)	cmacmoB732
CmoCh04G002900	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G002900	Bottle gourd (USVL1VR-Ls)	cmolsiB670