Carg25683 (gene) Silver-seed gourd

Overview
NameCarg25683
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionThioredoxin-like protein 4A
LocationCucurbita_argyrosperma_scaffold_291 : 107892 .. 109058 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGGTCTTTCTCTTTCCCTACTTCACAATTATTGTTGTTCATCATCAGATTTAATCATAATCCTTTTGTGTATATCTCTCCCTACCCCCTGTTTCTTCTTTTTGCTTCTACTGAACTGATATTTGTTCTGTTTCGGCTTTTAATTTCATAATATAAGACTCATTTTTTTTCAGTTCTTGGAGTCTATCAAGTCTCAGTCGGTCAAGGATTTTTCTTTTCTATTTTTGGGTTTTCTTTAATCTGGGCTTGATTTTTGTATGCATGCTTGCCTCAATTGACCAATTTTCTGAGTTTTATGTGCAATTTTTAGAATTGGTTGCTCGATCTTCTCTGTTATCATCATCTGTTCTGTTGCAATTCTGCTCCTCGCTTTCTATAATCATGCTTTCCTATGTATTTGAGCACATCAGTCCTATTACGCACCTGAAATGAAGTTATTAAACGACTTGCCTATTGATCTTTAATAATCCAGTCTTTGATTGTTGTTGCTGTATGCACGAGGTTTTCCATGCTAGCGGGATGATCAAAGTTTGAGTTCATGGGCCATCTAGACTCTTTTTTGGTGTATGATTTGTTTAGAGTCTTTTCCCCCTTGTTTTTGTTGCACGGAGCCACAATCCTTCCATCGTGAATGTTTAAAGTCGTGAAGATTTTTTCACATAATTTGTTTGGTTTACTCTACGTGATCATCTTTATAGTATTTTGAGATGTTATTATCTGATTGATATGTTTTTAATATAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

mRNA sequence

ATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Coding sequence (CDS)

ATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Protein sequence

MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Homology
[Close]
BLAST of Carg25683 vs. NCBI nr
Match: XP_022942612.1 (thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_022942613.1 thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_022988010.1 thioredoxin-like protein YLS8 [Cucurbita maxima] >XP_023532721.1 thioredoxin-like protein YLS8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.2 bits (757), Expect = 5.9e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. NCBI nr
Match: XP_016177040.1 (thioredoxin-like protein YLS8 [Arachis ipaensis] >XP_020966784.1 thioredoxin-like protein YLS8 [Arachis ipaensis] >XP_025677001.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025677002.1 thioredoxin-like protein YLS8 [Arachis hypogaea])

HSP 1 Score: 294.3 bits (752), Expect = 2.3e-76
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. NCBI nr
Match: XP_004148041.1 (PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus] >XP_004497782.1 PREDICTED: thioredoxin-like protein YLS8 [Cicer arietinum] >XP_006288859.1 thioredoxin-like protein YLS8 [Capsella rubella] >XP_006399318.1 thioredoxin-like protein YLS8 [Eutrema salsugineum] >XP_008457801.1 PREDICTED: thioredoxin-like protein YLS8 [Cucumis melo] >XP_010452811.1 PREDICTED: thioredoxin-like protein YLS8 [Camelina sativa] >XP_010491455.1 PREDICTED: thioredoxin-like protein YLS8 [Camelina sativa] >XP_012459864.1 PREDICTED: thioredoxin-like protein YLS8 [Gossypium raimondii] >XP_015894288.1 thioredoxin-like protein YLS8 [Ziziphus jujuba] >XP_015961428.1 thioredoxin-like protein YLS8 isoform X1 [Arachis duranensis] >XP_015961429.1 thioredoxin-like protein YLS8 isoform X1 [Arachis duranensis] >XP_016198827.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198828.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198829.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198830.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198831.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016734252.1 PREDICTED: thioredoxin-like protein YLS8 [Gossypium hirsutum] >XP_016734292.1 PREDICTED: thioredoxin-like protein YLS8 [Gossypium hirsutum] >XP_017612852.1 PREDICTED: thioredoxin-like protein YLS8 [Gossypium arboreum] >XP_019420159.1 PREDICTED: thioredoxin-like protein YLS8 [Lupinus angustifolius] >XP_019439280.1 PREDICTED: thioredoxin-like protein YLS8 [Lupinus angustifolius] >XP_021632944.1 thioredoxin-like protein YLS8 [Manihot esculenta] >XP_021674120.1 thioredoxin-like protein YLS8 [Hevea brasiliensis] >XP_021674917.1 thioredoxin-like protein YLS8 [Hevea brasiliensis] >XP_022139323.1 thioredoxin-like protein YLS8 isoform X1 [Momordica charantia] >XP_022153368.1 thioredoxin-like protein YLS8 [Momordica charantia] >XP_022153369.1 thioredoxin-like protein YLS8 [Momordica charantia] >XP_022927978.1 thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_022927979.1 thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_022971679.1 thioredoxin-like protein YLS8 [Cucurbita maxima] >XP_022971680.1 thioredoxin-like protein YLS8 [Cucurbita maxima] >XP_023513106.1 thioredoxin-like protein YLS8 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513107.1 thioredoxin-like protein YLS8 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513108.1 thioredoxin-like protein YLS8 isoform X1 [Cucurbita pepo subsp. pepo] >XP_024007091.1 thioredoxin-like protein YLS8 [Eutrema salsugineum] >XP_025695902.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025695903.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025649101.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025649102.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025649103.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025649104.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >ADV04065.1 mitosis protein YLS8 [Hevea brasiliensis] >AGH25793.1 YLS8 [Gossypium hirsutum] >EOA21757.1 hypothetical protein CARUB_v10002214mg [Capsella rubella] >ESQ40771.1 hypothetical protein EUTSA_v10014963mg [Eutrema salsugineum] >KGN62024.1 hypothetical protein Csa_2G287060 [Cucumis sativus] >KHG03038.1 Thioredoxin-like protein 4A [Gossypium arboreum] >OAY33298.1 hypothetical protein MANES_13G084100 [Manihot esculenta] >OIV95198.1 hypothetical protein TanjilG_21588 [Lupinus angustifolius] >OIW14294.1 hypothetical protein TanjilG_21434 [Lupinus angustifolius] >OVA18434.1 mRNA splicing factor [Macleaya cordata])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. NCBI nr
Match: KJB77370.1 (hypothetical protein B456_012G134400 [Gossypium raimondii])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 66  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 125

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 126 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 185

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 186 RGARKGRGLVIAPKDYSTKYRY 207

[Close]
BLAST of Carg25683 vs. NCBI nr
Match: GAU42866.1 (hypothetical protein TSUD_13340 [Trifolium subterraneum])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA+KDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. TAIR10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 291.2 bits (744), Expect = 3.5e-79
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. TAIR10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FI+++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

[Close]
BLAST of Carg25683 vs. Swiss-Prot
Match: sp|Q9FE62|YLS8_ARATH (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 6.2e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. Swiss-Prot
Match: sp|P83876|TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-70
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE ++IIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. Swiss-Prot
Match: sp|P83877|TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-70
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE ++IIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. Swiss-Prot
Match: sp|P87215|DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.3e-61
Identity = 108/142 (76.06%), Postives = 126/142 (88.73%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE I+IIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

[Close]
BLAST of Carg25683 vs. Swiss-Prot
Match: sp|Q75BD8|DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DIB1 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51
Identity = 93/138 (67.39%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 2   SYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+TEEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE I+IIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

[Close]
BLAST of Carg25683 vs. TrEMBL
Match: tr|S4U0X2|S4U0X2_GOSHI (thioredoxin-like protein YLS8 OS=Gossypium hirsutum OX=3635 GN=LOC107944993 PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. TrEMBL
Match: tr|A0A2P2M121|A0A2P2M121_RHIMU (Mitosis protein YLS8 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. TrEMBL
Match: tr|A0A1J3EC65|A0A1J3EC65_NOCCA (Thioredoxin-like protein YLS8 OS=Noccaea caerulescens OX=107243 GN=LC_TR17093_c0_g1_i1_g.58856 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Carg25683 vs. TrEMBL
Match: tr|A0A1J3DF14|A0A1J3DF14_NOCCA (Thioredoxin-like protein YLS8 (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR21189_c0_g1_i1_g.70234 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 38  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 97

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 98  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 157

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 158 RGARKGRGLVIAPKDYSTKYRY 179

[Close]
BLAST of Carg25683 vs. TrEMBL
Match: tr|A0A1J3IZG5|A0A1J3IZG5_NOCCA (Thioredoxin-like protein YLS8 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR24166_c0_g1_i1_g.70258 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 31  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 90

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI+IIETVY
Sbjct: 91  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 150

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 151 RGARKGRGLVIAPKDYSTKYRY 172

The following BLAST results are available for this feature:
BLAST of Carg25683 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942612.15.9e-77100.00thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_022942613.1 thioredoxin-l... [more]
XP_016177040.12.3e-7699.30thioredoxin-like protein YLS8 [Arachis ipaensis] >XP_020966784.1 thioredoxin-lik... [more]
XP_004148041.18.6e-7698.59PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus] >XP_004497782.1 PREDI... [more]
KJB77370.18.6e-7698.59hypothetical protein B456_012G134400 [Gossypium raimondii][more]
GAU42866.18.6e-7697.89hypothetical protein TSUD_13340 [Trifolium subterraneum][more]
BLAST of Carg25683 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08290.13.5e-7997.89mRNA splicing factor, thioredoxin-like U5 snRNP[more]
AT3G24730.11.8e-1937.23mRNA splicing factor, thioredoxin-like U5 snRNP[more]
BLAST of Carg25683 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FE62|YLS8_ARATH6.2e-7897.89Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=2 SV=1[more]
sp|P83876|TXN4A_HUMAN1.6e-7085.21Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1[more]
sp|P83877|TXN4A_MOUSE1.6e-7085.21Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1[more]
sp|P87215|DIMI_SCHPO5.3e-6176.06Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2... [more]
sp|Q75BD8|DIB1_ASHGO2.9e-5167.39Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F... [more]
BLAST of Carg25683 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|S4U0X2|S4U0X2_GOSHI5.7e-7698.59thioredoxin-like protein YLS8 OS=Gossypium hirsutum OX=3635 GN=LOC107944993 PE=2... [more]
tr|A0A2P2M121|A0A2P2M121_RHIMU5.7e-7698.59Mitosis protein YLS8 OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A1J3EC65|A0A1J3EC65_NOCCA5.7e-7698.59Thioredoxin-like protein YLS8 OS=Noccaea caerulescens OX=107243 GN=LC_TR17093_c0... [more]
tr|A0A1J3DF14|A0A1J3DF14_NOCCA5.7e-7698.59Thioredoxin-like protein YLS8 (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA... [more]
tr|A0A1J3IZG5|A0A1J3IZG5_NOCCA5.7e-7698.59Thioredoxin-like protein YLS8 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0046540U4/U6 x U5 tri-snRNP complex
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR004123Dim1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25683-RACarg25683-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..136
e-value: 1.2E-96
score: 337.0
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..136
e-value: 7.4E-67
score: 223.1
IPR004123Dim1 familyPIRSFPIRSF017199Dim1coord: 1..142
e-value: 1.3E-74
score: 246.4
IPR004123Dim1 familyPANTHERPTHR12052THIOREDOXIN-LIKE PROTEN 4A, 4Bcoord: 1..141
IPR004123Dim1 familyCDDcd02954DIM1coord: 10..123
e-value: 4.41988E-75
score: 221.015
NoneNo IPR availableGENE3DG3DSA:3.40.30.10coord: 1..141
e-value: 2.1E-75
score: 252.9
NoneNo IPR availablePANTHERPTHR12052:SF5THIOREDOXIN-LIKE PROTEIN 4Acoord: 1..141
IPR036249Thioredoxin-like superfamilySUPERFAMILYSSF52833Thioredoxin-likecoord: 4..137