Cucsa.166160 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.166160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Thioredoxin-like protein 4A
Location	scaffold01153 : 1442254 .. 1443500 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTAGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGGTAAACTTCATTTTTGAATCCCTAACTCTTCTACTTTTTCTCTCCATTTCACTATTGTTGTGCTCCTTCTGTTTGCTGATCGAAAAACCAAGGAGGAGAAAAAAAaTTGTTTCATTGTGGTTAAATCTAATTTATTTAACTGCGAGTTAAAATTGTTGACTAAATTACTGGTGAATAGGAATGAAACAGACTGAAGAAACCCTGGAGCCCATTTTCCGTCCTTCAACCAACCTCCTATGATTTGGGCCGAAGAGTTGTTTGTGTATATCTCTCTCTCAACTTCCTTTTTCTTCTTCTTGCTTTTACTGCAACTGAATTTGTACTTTAATGTCTTTTCATTTCACAAAACATGTCACTTGTTTTAGTTCTTCAAGTTTAGATGTCTTGGTTGGTTAATGTTTTTCTTGTTCCCTTTCTTCTCATCTGGGTTAGAGCTTGGAACATTCACTGCTTGAATTGATCATGACTTCTTAACTTGAACAAGTGTAAAATTTCAATTTTTTGGGCAGTTCTAGTGGTTCTATGTTAGATTTCATACCTTTCTTTGAGTTTCCATTTATCTCTTGGGTCTTATTTTGTTTAACTAGGGCCCTTCTTAGAGTTGCTGAACTTTCTTGGGTCGTATTATTCCATTTATTCTTAATGGAAGCTTAGCGTTTTGTTTTATTTtATTTTTTGAAAAACCTTCTTCTATTCATTTCTAATTTGTCCTATCTACTTGTTTGCCTGTGCTCACTTCTCTGTTATCTTCCGTTGTAAGTAGGATTGTTTATCATTTTTCAAGATGCTTGATCTGATTGATATCTTTTTTGATGTAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGACCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

mRNA sequence

ATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTAGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGACCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

Coding sequence (CDS)

ATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTAGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGACCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

Protein sequence

MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY*

Homology

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BLAST of Cucsa.166160 vs. Swiss-Prot
Match: YLS8_ARATH (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-77
Identity = 138/142 (97.18%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of Cucsa.166160 vs. Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.3e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

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BLAST of Cucsa.166160 vs. Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.3e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

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BLAST of Cucsa.166160 vs. Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dim1 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-60
Identity = 106/142 (74.65%), Postives = 126/142 (88.73%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ER+V+IRFG D D+ C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDIIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

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BLAST of Cucsa.166160 vs. Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.1e-50
Identity = 91/138 (65.94%), Postives = 112/138 (81.16%), Query Frame = 1


Query: 2   SYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+ EEER+V+IRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDIIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

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BLAST of Cucsa.166160 vs. TrEMBL
Match: M5XFL9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013047mg PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVV+IRFGHDWDDTCMQMDEVLASVAET+KNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVVIRFGHDWDDTCMQMDEVLASVAETLKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. TrEMBL
Match: A0A0C9S956_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1947_793 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+V+IRFGHDWDDTCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. TrEMBL
Match: A0A0D6R6J6_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+V+IRFGHDWDDTCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. TrEMBL
Match: R0FHD6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002214mg PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.3e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. TrEMBL
Match: A0A0B0MLM5_GOSAR (Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.3e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. TAIR10
Match: AT5G08290.1 (AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 290.4 bits (742), Expect = 5.9e-79
Identity = 138/142 (97.18%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. TAIR10
Match: AT3G24730.1 (AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + V+++RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

[Close]

BLAST of Cucsa.166160 vs. NCBI nr
Match: gi|449451739|ref|XP_004143618.1| (PREDICTED: thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 8.9e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. NCBI nr
Match: gi|658052339|ref|XP_008361907.1| (PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. NCBI nr
Match: gi|698503996|ref|XP_009797554.1| (PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 293.1 bits (749), Expect = 2.6e-76
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEER+VIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. NCBI nr
Match: gi|596202419|ref|XP_007223713.1| (hypothetical protein PRUPE_ppa013047mg [Prunus persica])

HSP 1 Score: 293.1 bits (749), Expect = 2.6e-76
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVV+IRFGHDWDDTCMQMDEVLASVAET+KNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVVIRFGHDWDDTCMQMDEVLASVAETLKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cucsa.166160 vs. NCBI nr
Match: gi|1009138641|ref|XP_015886695.1| (PREDICTED: thioredoxin-like protein YLS8 [Ziziphus jujuba])

HSP 1 Score: 292.0 bits (746), Expect = 5.8e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL DKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALTDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

The following BLAST results are available for this feature:

BLAST of Cucsa.166160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS8_ARATH	1.1e-77	97.18	Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1	[more]
TXN4A_HUMAN	7.3e-71	85.92	Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1	[more]
TXN4A_MOUSE	7.3e-71	85.92	Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1	[more]
DIMI_SCHPO	2.6e-60	74.65	Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=d...	[more]
DIB1_ASHGO	7.1e-50	65.94	Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F...	[more]

BLAST of Cucsa.166160 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XFL9_PRUPE	1.8e-76	97.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013047mg PE=4 SV=1	[more]
A0A0C9S956_9SPER	4.0e-76	97.89	TSA: Wollemia nobilis Ref_Wollemi_Transcript_1947_793 transcribed RNA sequence O...	[more]
A0A0D6R6J6_ARACU	4.0e-76	97.89	Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1	[more]
R0FHD6_9BRAS	5.3e-76	97.89	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002214mg PE=4 SV=1	[more]
A0A0B0MLM5_GOSAR	5.3e-76	97.89	Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1	[more]

BLAST of Cucsa.166160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08290.1	5.9e-79	97.18	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]
AT3G24730.1	1.8e-19	37.96	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]

BLAST of Cucsa.166160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451739\|ref\|XP_004143618.1\|	8.9e-77	100.00	PREDICTED: thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus]	[more]
gi\|658052339\|ref\|XP_008361907.1\|	1.2e-76	99.30	PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]	[more]
gi\|698503996\|ref\|XP_009797554.1\|	2.6e-76	98.59	PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Nicotiana sylvestris]	[more]
gi\|596202419\|ref\|XP_007223713.1\|	2.6e-76	97.89	hypothetical protein PRUPE_ppa013047mg [Prunus persica]	[more]
gi\|1009138641\|ref\|XP_015886695.1\|	5.8e-76	98.59	PREDICTED: thioredoxin-like protein YLS8 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004123	Dim1
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005681	spliceosomal complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016197	endosomal transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0007067	mitotic nuclear division
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0009536	plastid
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.166160.1	Cucsa.166160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004123	Dim1 family	PIR	PIRSF017199	Dim1	coord: 1..142 score: 9.3
IPR004123	Dim1 family	PANTHER	PTHR12052	THIOREDOXIN-LIKE PROTEN 4A, 4B	coord: 1..142 score: 2.9E
IPR004123	Dim1 family	PFAM	PF02966	DIM1	coord: 4..136 score: 4.4
IPR004123	Dim1 family	SMART	SM01410	DIM1_2	coord: 4..136 score: 6.8
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 1..142 score: 1.8
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 4..137 score: 8.64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.166160	Cla020056	Watermelon (97103) v1	cgywmB310
Cucsa.166160	Csa5G175720	Cucumber (Chinese Long) v2	cgycuB251
Cucsa.166160	MELO3C011749	Melon (DHL92) v3.5.1	cgymeB290
Cucsa.166160	ClCG02G014070	Watermelon (Charleston Gray)	cgywcgB290
Cucsa.166160	CSPI05G08640	Wild cucumber (PI 183967)	cgycpiB258
Cucsa.166160	CmaCh04G002810	Cucurbita maxima (Rimu)	cgycmaB0471
Cucsa.166160	CmaCh04G012520	Cucurbita maxima (Rimu)	cgycmaB0472
Cucsa.166160	CmoCh04G002900	Cucurbita moschata (Rifu)	cgycmoB0474
Cucsa.166160	CmoCh04G013260	Cucurbita moschata (Rifu)	cgycmoB0475
Cucsa.166160	Cp4.1LG01g10230	Cucurbita pepo (Zucchini)	cgycpeB0458
Cucsa.166160	MELO3C011749.2	Melon (DHL92) v3.6.1	cgymedB285
Cucsa.166160	CsaV3_5G006100	Cucumber (Chinese Long) v3	cgycucB264
Cucsa.166160	Cla97C02G039800	Watermelon (97103) v2	cgywmbB290
Cucsa.166160	Bhi07G000926	Wax gourd	cgywgoB340
Cucsa.166160	Carg25683	Silver-seed gourd	carcgyB0972
Cucsa.166160	Carg02055	Silver-seed gourd	carcgyB0963

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.166160	Wax gourd	cgywgoB338
Cucsa.166160	Cucurbita pepo (Zucchini)	cgycpeB0457
Cucsa.166160	Bottle gourd (USVL1VR-Ls)	cgylsiB276