Cla97C07G143770 (gene) Watermelon (97103) v2

Overview
NameCla97C07G143770
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr07 : 31284397 .. 31285016 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTTATATCCTCACAAAACACACCAAGAAATGCAATAGAAAAATTATTCTTGTGCTGCAATATCCAAAAATGGCTTCTAACAGATCTCTCATTTGGCAACTGCTTTTGGTTTTAATTGCCATTCTAAGTTATAGTGTTGCTGCAAGGAATTGGGCTTCTGCTCCTCAAACTGCTTGTAAGTAGATCTTATATGCCTATTTCTTGTTGATGGATTGTTTAGGGGGAAAACCATTTTCAATTTTAGTCAAAATTTAGGGAAAAAAAATGATTTTATAATTAATGTACTTTCTTTTCTATTATTCATGTGTTTGGAGTTGTCCCTCTCAAGCAATCCGATAAAATCGAAACGATATAGAGAAGATTAGTGTAGCTTCTATGCATGGATGATACGTAAAAAATCGAAAAATATTCTAAGTTATTTTCGAAAAAAATCATGTGTTAGAGTGATATAGATCATACTTTCCCACTATAAATAGGTTTCAATCTAATTTTTTTTTATTTTTCTTCTTTTCTTATGATCTTTTTCAGACAAGGATGGTGTGGGTATCAAAAGCATAAAAAGGGTTACTAAACCTATTCCAAGGAAAGATAAACCTCGGGGTGGAAATTTCTAA

mRNA sequence

ATGTGTATTTATATCCTCACAAAACACACCAAGAAATGCAATAGAAAAATTATTCTTGTGCTGCAATATCCAAAAATGGCTTCTAACAGATCTCTCATTTGGCAACTGCTTTTGGTTTTAATTGCCATTCTAAGTTATAGTGTTGCTGCAAGGAATTGGGCTTCTGCTCCTCAAACTGCTTACAAGGATGGTGTGGGTATCAAAAGCATAAAAAGGGTTACTAAACCTATTCCAAGGAAAGATAAACCTCGGGGTGGAAATTTCTAA

Coding sequence (CDS)

ATGTGTATTTATATCCTCACAAAACACACCAAGAAATGCAATAGAAAAATTATTCTTGTGCTGCAATATCCAAAAATGGCTTCTAACAGATCTCTCATTTGGCAACTGCTTTTGGTTTTAATTGCCATTCTAAGTTATAGTGTTGCTGCAAGGAATTGGGCTTCTGCTCCTCAAACTGCTTACAAGGATGGTGTGGGTATCAAAAGCATAAAAAGGGTTACTAAACCTATTCCAAGGAAAGATAAACCTCGGGGTGGAAATTTCTAA

Protein sequence

MCIYILTKHTKKCNRKIILVLQYPKMASNRSLIWQLLLVLIAILSYSVAARNWASAPQTAYKDGVGIKSIKRVTKPIPRKDKPRGGNF
Homology
[Close]
BLAST of Cla97C07G143770 vs. NCBI nr
Match: KGN53139.1 (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 26 MASNRSLIWQLLLVLIAILSYSVAARNWASAPQTAYKDGVGIKSIKRVTKPIPRKDKPRG 85
          MAS  SLIWQL++VL+AILS SVAAR+  S PQTAYKD VGIKSIK+V KP+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 86 GNF 89
          GN+
Sbjct: 61 GNY 63

[Close]
BLAST of Cla97C07G143770 vs. TrEMBL
Match: tr|A0A0A0KW87|A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 26 MASNRSLIWQLLLVLIAILSYSVAARNWASAPQTAYKDGVGIKSIKRVTKPIPRKDKPRG 85
          MAS  SLIWQL++VL+AILS SVAAR+  S PQTAYKD VGIKSIK+V KP+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 86 GNF 89
          GN+
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
BLAST of Cla97C07G143770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53139.12.8e-1674.60hypothetical protein Csa_4G022260 [Cucumis sativus][more]
BLAST of Cla97C07G143770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KW87|A0A0A0KW87_CUCSA1.8e-1674.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1[more]
BLAST of Cla97C07G143770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C07G143770 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G143770.1Cla97C07G143770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G143770Csa4G022260Cucumber (Chinese Long) v2cuwmbB316
Cla97C07G143770ClCG07G016790Watermelon (Charleston Gray)wcgwmbB307
Cla97C07G143770CSPI04G03910Wild cucumber (PI 183967)cpiwmbB326
Cla97C07G143770Cucsa.094310Cucumber (Gy14) v1cgywmbB112
Cla97C07G143770CmaCh16G001980Cucurbita maxima (Rimu)cmawmbB352
Cla97C07G143770CmoCh16G002140Cucurbita moschata (Rifu)cmowmbB337
Cla97C07G143770CsGy4G003800Cucumber (Gy14) v2cgybwmbB298
Cla97C07G143770CsaV3_4G003960Cucumber (Chinese Long) v3cucwmbB324
Cla97C07G143770Bhi01G002017Wax gourdwgowmbB210
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C07G143770Silver-seed gourdcarwmbB0199
Cla97C07G143770Cucurbita maxima (Rimu)cmawmbB775
Cla97C07G143770Cucurbita moschata (Rifu)cmowmbB749
Cla97C07G143770Bottle gourd (USVL1VR-Ls)lsiwmbB406
Cla97C07G143770Melon (DHL92) v3.6.1medwmbB491
Cla97C07G143770Melon (DHL92) v3.5.1mewmbB498
Cla97C07G143770Watermelon (97103) v1wmwmbB174