CsGy4G003800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G003800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 2410040 .. 2411291 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTATTATGTAATAAGAAGCTGCTGAGAAATAATCTCTTCAAATTTTTGAAAGGGAAAAATATATCAAATCCCTATTTATATCCTTACAAAACACAGCAAGAAATGCAATAAAAAAAACTTCTTGCTCTACAAAAATTATAATAAGGTTTTTTTCTTTGTCCAAAAAAAATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTGTAAGTGAATCCTAAACCCATTTCTTTTGGATAAATATGGATAGTATAAAGTTTTTGCATTCTTAAACATACTTAGTTTAATTTTGTTTTCTATTATGTATATACATGTGTCTGTGTAGTTCCTTCCAAAACATGATGATGAAACTGCAACGATATGAAAATGATTAACATGATGAAATTACAAACACATCATATAAAAAAAGATATCTTGTCTTTGCTTATTCTTGGGTGGGGAATGTTTTTTCAGATTATGTATATGTAATCTAACAATTCGATATAGAACTCAGATGCTCATATACAAAGGTTGGTCCTGGTCGTAGCTAGGTTTAGGTTATTGGTCGCTCTATTTGATCCTTTCAAGTTGATCATATAGTTAATCAATTCAAATTCTTTGTTCAGTCCAACAAATTAATATCATTTCACAGTCTTTTCTTTTTATATGATTCATCTGAATTGCAGCTAAACATAAACAATAGAGTTTATATAATCATTTGCAACCATTTTAGACTATTTTTCTACAAAGTAATGGATCATACTATCTACTTTATTATGTTGCAATCTAATTATCTGTTTTATTTTTTTCTTATCTTTTACAGACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAATCAAGTTGGAAAAATAATTAAATACATTGGAGGATGTTAAGTTTTCATAACATTTTTACTTCATAATAAATTATCTTTTCGGTCAAAATGACATGTAGTTCAATTCACATAGCACTTGTCCTAAAAAAAAGTACTCTTGCCACACATATTACTCCAATGAATTCACTTGAAAAAATAATTCCTGCAATCTCCCTTTTAGCTTTTTGTCGAATTCTTAATTGAATATGCTAATCTTTTGTAACCCTAAACAAAATCAATTGTAAAAACTCGAGCAAGATGAACAATTATTAGAG

mRNA sequence

ATTTTATTATGTAATAAGAAGCTGCTGAGAAATAATCTCTTCAAATTTTTGAAAGGGAAAAATATATCAAATCCCTATTTATATCCTTACAAAACACAGCAAGAAATGCAATAAAAAAAACTTCTTGCTCTACAAAAATTATAATAAGGTTTTTTTCTTTGTCCAAAAAAAATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAATCAAGTTGGAAAAATAATTAAATACATTGGAGGATGTTAAGTTTTCATAACATTTTTACTTCATAATAAATTATCTTTTCGGTCAAAATGACATGTAGTTCAATTCACATAGCACTTGTCCTAAAAAAAAGTACTCTTGCCACACATATTACTCCAATGAATTCACTTGAAAAAATAATTCCTGCAATCTCCCTTTTAGCTTTTTGTCGAATTCTTAATTGAATATGCTAATCTTTTGTAACCCTAAACAAAATCAATTGTAAAAACTCGAGCAAGATGAACAATTATTAGAG

Coding sequence (CDS)

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAA

Protein sequence

MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRGGNY

Homology

[Close]

BLAST of CsGy4G003800 vs. NCBI nr
Match: KGN53139.1 (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 8.9e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

[Close]

BLAST of CsGy4G003800 vs. TrEMBL
Match: tr|A0A0A0KW87|A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:

BLAST of CsGy4G003800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53139.1	8.9e-25	100.00	hypothetical protein Csa_4G022260 [Cucumis sativus]	[more]

BLAST of CsGy4G003800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G003800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G003800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW87\|A0A0A0KW87_CUCSA	5.9e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G003800.1	CsGy4G003800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..21 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G003800	Csa4G022260	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G003800	CSPI04G03910	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G003800	CmaCh16G001980	Cucurbita maxima (Rimu)	cgybcmaB493
CsGy4G003800	CmoCh16G002140	Cucurbita moschata (Rifu)	cgybcmoB464
CsGy4G003800	MELO3C032836.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G003800	CsaV3_4G003960	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G003800	Cla97C07G143770	Watermelon (97103) v2	cgybwmbB298
CsGy4G003800	Bhi01G002017	Wax gourd	cgybwgoB355

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G003800	Cucurbita maxima (Rimu)	cgybcmaB542
CsGy4G003800	Cucurbita moschata (Rifu)	cgybcmoB516
CsGy4G003800	Cucurbita pepo (Zucchini)	cgybcpeB503
CsGy4G003800	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G003800	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G003800	Watermelon (Charleston Gray)	cgybwcgB297
CsGy4G003800	Watermelon (97103) v1	cgybwmB290
CsGy4G003800	Wax gourd	cgybwgoB361