Csa4G022260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G022260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 2382766 .. 2383854 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAATATATCAAATCCCTATTTATATCCTTACAAAACACAGCAAGAAATGCAATAAAAAAAACTTCTTGCTCTACAAAAATTATAATAAGGTTTTTTTCTTTGTCCAAAAAAAATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTGTAAGTGAATCCTAAACCCATTTCTTTTGGATAAATATGGATAGTATAAAGTTTTTGCATTCTTAAACATACTTAGTTTAATTTTGTTTTCTATTATGTATATACATGTGTCTGTGTAGTTCCTTCCAAAACATGATGATGAAACTGCAACGATATGAAAATGATTAACATGATGAAATTACAAACACATCATATAAAAAAAGATATCTTGTCTTTGCTTATTCTTGGGTGGGGAATGTTTTTTCAGATTATGTATATGTAATCTAACAATTCGATATAGAACTCAGATGCTCATATACAAAGGTTGGTCCTGGTCGTAGCTAGGTTTAGGTTATTGGTCGCTCTATTTGATCCTTTCAAGTTGATCATATAGTTAATCAATTCAAATTCTTTGTTCAGTCCAACAAATTAATATCATTTCACAGTCTTTTCTTTTTATATGATTCATCTGAATTGCAGCTAAACATAAACAATAGAGTTTATATAATCATTTGCAACCATTTTAGACTATTTTTCTACAAAGTAATGGATCATACTATCTACTTTATTATGTTGCAATCTAATTATCTGTTTTATTTTTTTCTTATCTTTTACAGACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAATCAAGTTGGAAAAATAATTAAATACATTGGAGGATGTTAAGTTTTCATAACATTTTTACTTCATAATAAATTATCTTTTCGGTCAAAATGACATGTAGTTCAATTCACATAGCACTTGTCCTAAAAAAAAGTACTCTTGCCACACATATTACTCCAATGAATTCACTTGAAAAAATAATTCCTGC

mRNA sequence

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAA

Coding sequence (CDS)

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAA

Protein sequence

MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRGGNY*
Homology
[Close]
BLAST of Csa4G022260 vs. TrEMBL
Match: A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

[Close]
BLAST of Csa4G022260 vs. NCBI nr
Match: gi|700197981|gb|KGN53139.1| (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
BLAST of Csa4G022260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW87_CUCSA7.7e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1[more]
BLAST of Csa4G022260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197981|gb|KGN53139.1|1.1e-26100.00hypothetical protein Csa_4G022260 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU155680cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G022260.1Csa4G022260.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU155680CU155680transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G022260MELO3C032836.2Melon (DHL92) v3.6.1cumedB297
Csa4G022260Cla97C07G143770Watermelon (97103) v2cuwmbB316
Csa4G022260Bhi01G002017Wax gourdcuwgoB368
Csa4G022260CSPI04G03910Wild cucumber (PI 183967)cpicuB182
Csa4G022260Cucsa.094310Cucumber (Gy14) v1cgycuB102
Csa4G022260CsGy4G003800Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G022260Cucurbita maxima (Rimu)cmacuB332
Csa4G022260Cucurbita maxima (Rimu)cmacuB710
Csa4G022260Cucurbita moschata (Rifu)cmocuB321
Csa4G022260Cucurbita moschata (Rifu)cmocuB700
Csa4G022260Melon (DHL92) v3.5.1cumeB312
Csa4G022260Watermelon (Charleston Gray)cuwcgB319
Csa4G022260Watermelon (97103) v1cuwmB312
Csa4G022260Cucurbita pepo (Zucchini)cpecuB401
Csa4G022260Bottle gourd (USVL1VR-Ls)culsiB303