CU155680 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU155680
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 2382867 .. 2383803 (+)
Sequence length	340

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTTGTCCAAAAAAAATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATGAACCTAGGGGTGGAAATTACTAATCAAGTTGGAAAAATAATTAAATACATTGGAGGATGTTAAGTTTTCATAACATTTTTACTTCATAATAAATTATCTTTTCGGTCAAAATGACATGTAGTTCAATTCACATATCACTTGTCCTAAAAAAAAGTA

Library


Library category	ESTs
other	1

Homology

[Close]

BLAST of CU155680 vs. TrEMBL
Match: A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.0e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 16  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDEPRG 75
           MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKD+PRG
Sbjct: 1   MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 76  GNY 135
           GNY
Sbjct: 61  GNY 63

Query: 136  195
           
Sbjct: 121  63

Query: 196  205
           
Sbjct: 181  63

[Close]

BLAST of CU155680 vs. NCBI nr
Match: gi|700197981|gb|KGN53139.1| (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 4.8e-25
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 16  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDEPRG 75
           MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKD+PRG
Sbjct: 1   MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 76  GNY 135
           GNY
Sbjct: 61  GNY 63

Query: 136  195
           
Sbjct: 121  63

Query: 196  205
           
Sbjct: 181  63

The following BLAST results are available for this feature:

BLAST of CU155680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW87_CUCSA	4.0e-26	98.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1	[more]

BLAST of CU155680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197981\|gb\|KGN53139.1\|	4.8e-25	98.41	hypothetical protein Csa_4G022260 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G022260	Csa4G022260	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
GH571818	GH571818	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..21 score: