CSPI04G03910 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G03910
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 2445749 .. 2446959 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAGAAATAATCTCTTCAAATTTTTGAAAGGGAAAAATATATCAAATCCCTATTTATATCCTTACAAAACACAGCAAGAAATGCAATAAAAAAACTTCTTGCTCTACAAAAATTATAATAAGGTTTTTTTCTTTGTCCAAAAAAAATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTGTAAGTGAATCCTAAACCCATTTCTTTTGGATAAATATGGATAGTATAAAGTTTTTGCATTCTTAAACATACTTAGTTTAATTTTGTTTTCTATTATGTATATACATGTGTCTGTGTAGTTCCTTCCAAAACATGATGATGAAACTGAAACGATATTGAAATGATTAACATGATGAAATTACGAACACATCATATAAAAAAAGATATCTTGTCTTTGCTTATTCTTGGGTGGGGAATGTTTTTTCAGATTATGTATATGTAATCTAACAATTCGATATAGAACTCAGATGCACATATACAAAGGTTGGTCCTGGTCGTAGCTAGGTTTAGGTTATTGGTCGCTCTATTTGATCCTTTCAAGTCGATCATATAGTTAATCAATTCAAATTCTTTGTTCAGTCCAACAAATTAATATCATTTCACAGTCTTTTCTTTTTATATGATTCATCTGAATTGCAGCTAAACATAAACAATAGAGTTTATATAATCATTTGCAACCATTTTAGACTATTTTTCTACAAAGTAATGGATCATACTATCTACTTTATTATGTTGCAATCTAATTATCTGTTTTATTTTTTTCTTATCTTTTACAGACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAATCAAGTTGGAAAAATAATTAAATACATTGGAGGATGTTAAGTTTTCGTAACATTTTTACTTCATAATAAATTATCTTTTCGGTCAAAATGACATGTAGTTCAATTCACATAGCACTTGTCCTAAAAAAAAGTACTCTTGCCACACATATTACTCCAATGAATTCACTTGAAAAAATAATTCCTGCAATCTCCCTTTTAGCTTTTTGTCGAATTCTTAATTGAATATGCTAATCTTTTGTCACCCTAAACAAAATCAATTGTAAAAACTCGAGCAAGA

mRNA sequence

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAA

Coding sequence (CDS)

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAA
Homology
[Close]
BLAST of CSPI04G03910 vs. TrEMBL
Match: A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

[Close]
BLAST of CSPI04G03910 vs. NCBI nr
Match: gi|700197981|gb|KGN53139.1| (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
BLAST of CSPI04G03910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G03910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW87_CUCSA1.9e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1[more]
BLAST of CSPI04G03910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G03910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197981|gb|KGN53139.1|2.7e-25100.00hypothetical protein Csa_4G022260 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03910.1CSPI04G03910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G03910Csa4G022260Cucumber (Chinese Long) v2cpicuB182
CSPI04G03910MELO3C032836.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G03910CsaV3_4G003960Cucumber (Chinese Long) v3cpicucB213
CSPI04G03910Cla97C07G143770Watermelon (97103) v2cpiwmbB326
CSPI04G03910Bhi01G002017Wax gourdcpiwgoB370
CSPI04G03910Cucsa.094310Cucumber (Gy14) v1cgycpiB103
CSPI04G03910CsGy4G003800Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G03910Cucurbita maxima (Rimu)cmacpiB337
CSPI04G03910Cucurbita maxima (Rimu)cmacpiB716
CSPI04G03910Cucurbita moschata (Rifu)cmocpiB328
CSPI04G03910Cucurbita moschata (Rifu)cmocpiB708
CSPI04G03910Melon (DHL92) v3.5.1cpimeB310
CSPI04G03910Watermelon (Charleston Gray)cpiwcgB336
CSPI04G03910Watermelon (97103) v1cpiwmB315
CSPI04G03910Cucurbita pepo (Zucchini)cpecpiB398
CSPI04G03910Bottle gourd (USVL1VR-Ls)cpilsiB303