CsaV3_4G003960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G003960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 2412105 .. 2413348 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCTTCAAATTTTTGAAAGGGAAAAATATATCAAATCCCTATTTATATCCTTACAAAACACAGCAAGAAATGCAATAAAAAAAACTTCTTGCTCTACAAAAATTATAATAAGGTTTTTTTCTTTGTCCAAAAAAAATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTGTAAGTGAATCCTAAACCCATTTCTTTTGGATAAATATGGATAGTATAAAGTTTTTGCATTCTTAAACATACTTAGTTTAATTTTGTTTTCTATTATGTATATACATGTGTCTGTGTAGTTCCTTCCAAAACATGATGATGAAACTGCAACGATATGAAAATGATTAACATGATGAAATTACAAACACATCATATAAAAAAAGATATCTTGTCTTTGCTTATTCTTGGGTGGGGAATGTTTTTTCAGATTATGTATATGTAATCTAACAATTCGATATAGAACTCAGATGCTCATATACAAAGGTTGGTCCTGGTCGTAGCTAGGTTTAGGTTATTGGTCGCTCTATTTGATCCTTTCAAGTTGATCATATAGTTAATCAATTCAAATTCTTTGTTCAGTCCAACAAATTAATATCATTTCACAGTCTTTTCTTTTTATATGATTCATCTGAATTGCAGCTAAACATAAACAATAGAGTTTATATAATCATTTGCAACCATTTTAGACTATTTTTCTACAAAGTAATGGATCATACTATCTACTTTATTATGTTGCAATCTAATTATCTGTTTTATTTTTTTCTTATCTTTTACAGACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAATCAAGTTGGAAAAATAATTAAATACATTGGAGGATGTTAAGTTTTCATAACATTTTTACTTCATAATAAATTATCTTTTCGGTCAAAATGACATGTAGTTCAATTCACATAGCACTTGTCCTAAAAAAAAGTACTCTTGCCACACATATTACTCCAATGAATTCACTTGAAAAAATAATTCCTGCAATCTCCCTTTTAGCTTTTTGTCGAATTCTTAATTGAATATGCTAATCTTTTGTAACCCTAAACAAAATCAATTGTAAAAACTCGAGCAAGATGAACAATTATTAGAGGTATAGTTCACTCTTTTTCACATCCT

mRNA sequence

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAA

Coding sequence (CDS)

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGCATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGCAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCGTTCCAAAGAAAGATAAACCTAGGGGTGGAAATTACTAA

Protein sequence

MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRGGNY
Homology
[Close]
BLAST of CsaV3_4G003960 vs. NCBI nr
Match: KGN53139.1 (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

[Close]
BLAST of CsaV3_4G003960 vs. TrEMBL
Match: tr|A0A0A0KW87|A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
BLAST of CsaV3_4G003960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53139.15.3e-25100.00hypothetical protein Csa_4G022260 [Cucumis sativus][more]
BLAST of CsaV3_4G003960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G003960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G003960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KW87|A0A0A0KW87_CUCSA3.5e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G003960.1CsaV3_4G003960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G003960CSPI04G03910Wild cucumber (PI 183967)cpicucB213
CsaV3_4G003960Cucsa.094310Cucumber (Gy14) v1cgycucB102
CsaV3_4G003960CmaCh16G001980Cucurbita maxima (Rimu)cmacucB0387
CsaV3_4G003960CmoCh16G002140Cucurbita moschata (Rifu)cmocucB0384
CsaV3_4G003960CsGy4G003800Cucumber (Gy14) v2cgybcucB171
CsaV3_4G003960MELO3C032836.2Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G003960Cla97C07G143770Watermelon (97103) v2cucwmbB324
CsaV3_4G003960Bhi01G002017Wax gourdcucwgoB373
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G003960Cucurbita maxima (Rimu)cmacucB0842
CsaV3_4G003960Cucurbita moschata (Rifu)cmocucB0828
CsaV3_4G003960Cucurbita pepo (Zucchini)cpecucB0498
CsaV3_4G003960Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G003960Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G003960Watermelon (Charleston Gray)cucwcgB336
CsaV3_4G003960Watermelon (97103) v1cucwmB324