CmaCh16G001980 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G001980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 892348 .. 892772 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTATTTTGTTTGCCCACAAAATGGGTGCCAAGAGATCTTTCCTTTGGCAAATGGTTTTGGTTCTAATAGCCATTCTGGCTCATCGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTGTAAGTGGATCCTACCCATTTAAAACAATTTCAGACGACACAATTTCTATGTACTTATGAATCTAATTACTTGTTTGTTTGTTCATATGTTCTTTTCAGACAAGGATGTTGTGGGAATCAAGAACATAAGAAGGGTTGGTCGACCCATCCCAAGGAAAGATAAGCAAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTAATAAGTTTGTAATCAATCTCCTTGTTTCTATTTCCATATCTTTTATCCACATGAAGTGATAAACATTATTACTTCC

mRNA sequence

TTATTATTTTGTTTGCCCACAAAATGGGTGCCAAGAGATCTTTCCTTTGGCAAATGGTTTTGGTTCTAATAGCCATTCTGGCTCATCGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAGGGTTGGTCGACCCATCCCAAGGAAAGATAAGCAAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTAATAAGTTTGTAATCAATCTCCTTGTTTCTATTTCCATATCTTTTATCCACATGAAGTGATAAACATTATTACTTCC

Coding sequence (CDS)

ATGGGTGCCAAGAGATCTTTCCTTTGGCAAATGGTTTTGGTTCTAATAGCCATTCTGGCTCATCGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAGGGTTGGTCGACCCATCCCAAGGAAAGATAAGCAAAGGGGTGGCAATTTCTAA

Protein sequence

MGAKRSFLWQMVLVLIAILAHRVAPRHLGSAPLTAYKDVVGIKNIRRVGRPIPRKDKQRGGNF
Homology
[Close]
BLAST of CmaCh16G001980 vs. TrEMBL
Match: A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-12
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 

Query: 1  MGAKRSFLWQMVLVLIAILAHRVAPRHLGSAPLTAYKDVVGIKNIRRVGRPIPRKDKQRG 60
          M +K S +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I++V +P+P+KDK RG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

[Close]
BLAST of CmaCh16G001980 vs. NCBI nr
Match: gi|700197981|gb|KGN53139.1| (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-12
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 

Query: 1  MGAKRSFLWQMVLVLIAILAHRVAPRHLGSAPLTAYKDVVGIKNIRRVGRPIPRKDKQRG 60
          M +K S +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I++V +P+P+KDK RG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
BLAST of CmaCh16G001980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G001980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW87_CUCSA1.4e-1258.73Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1[more]
BLAST of CmaCh16G001980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G001980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197981|gb|KGN53139.1|2.0e-1258.73hypothetical protein Csa_4G022260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G001980.1CmaCh16G001980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G001980CmoCh16G002140Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G001980MELO3C032836.2Melon (DHL92) v3.6.1cmamedB355
CmaCh16G001980CsaV3_4G003960Cucumber (Chinese Long) v3cmacucB0387
CmaCh16G001980Cla97C07G143770Watermelon (97103) v2cmawmbB352
CmaCh16G001980Bhi01G002017Wax gourdcmawgoB0434
CmaCh16G001980CsGy4G003800Cucumber (Gy14) v2cgybcmaB493
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G001980Silver-seed gourdcarcmaB0526
CmaCh16G001980Silver-seed gourdcarcmaB1206
CmaCh16G001980Cucurbita maxima (Rimu)cmacmaB345
CmaCh16G001980Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G001980Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G001980Wild cucumber (PI 183967)cmacpiB337
CmaCh16G001980Cucumber (Chinese Long) v2cmacuB332
CmaCh16G001980Watermelon (Charleston Gray)cmawcgB302
CmaCh16G001980Cucurbita pepo (Zucchini)cmacpeB342
CmaCh16G001980Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G001980Cucurbita pepo (Zucchini)cmacpeB351