CmaCh16G001980.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G001980.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 892348 .. 892772 (+)
Sequence length326
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTATTTTGTTTGCCCACAAAATGGGTGCCAAGAGATCTTTCCTTTGGCAAATGGTTTTGGTTCTAATAGCCATTCTGGCTCATCGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTGTAAGTGGATCCTACCCATTTAAAACAATTTCAGACGACACAATTTCTATGTACTTATGAATCTAATTACTTGTTTGTTTGTTCATATGTTCTTTTCAGACAAGGATGTTGTGGGAATCAAGAACATAAGAAGGGTTGGTCGACCCATCCCAAGGAAAGATAAGCAAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTAATAAGTTTGTAATCAATCTCCTTGTTTCTATTTCCATATCTTTTATCCACATGAAGTGATAAACATTATTACTTCC

mRNA sequence

TTATTATTTTGTTTGCCCACAAAATGGGTGCCAAGAGATCTTTCCTTTGGCAAATGGTTTTGGTTCTAATAGCCATTCTGGCTCATCGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAGGGTTGGTCGACCCATCCCAAGGAAAGATAAGCAAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTAATAAGTTTGTAATCAATCTCCTTGTTTCTATTTCCATATCTTTTATCCACATGAAGTGATAAACATTATTACTTCC

Coding sequence (CDS)

ATGGGTGCCAAGAGATCTTTCCTTTGGCAAATGGTTTTGGTTCTAATAGCCATTCTGGCTCATCGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAGGGTTGGTCGACCCATCCCAAGGAAAGATAAGCAAAGGGGTGGCAATTTCTAA

Protein sequence

MGAKRSFLWQMVLVLIAILAHRVAPRHLGSAPLTAYKDVVGIKNIRRVGRPIPRKDKQRGGNF
Homology
[Close]
BLAST of CmaCh16G001980.1 vs. TrEMBL
Match: A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-12
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 

Query: 1  MGAKRSFLWQMVLVLIAILAHRVAPRHLGSAPLTAYKDVVGIKNIRRVGRPIPRKDKQRG 60
          M +K S +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I++V +P+P+KDK RG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

[Close]
BLAST of CmaCh16G001980.1 vs. NCBI nr
Match: gi|700197981|gb|KGN53139.1| (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-12
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 

Query: 1  MGAKRSFLWQMVLVLIAILAHRVAPRHLGSAPLTAYKDVVGIKNIRRVGRPIPRKDKQRG 60
          M +K S +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I++V +P+P+KDK RG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
BLAST of CmaCh16G001980.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G001980.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW87_CUCSA1.4e-1258.73Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1[more]
BLAST of CmaCh16G001980.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G001980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197981|gb|KGN53139.1|2.0e-1258.73hypothetical protein Csa_4G022260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh16G001980CmaCh16G001980gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh16G001980.1CmaCh16G001980.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G001980.1.exon.1CmaCh16G001980.1.exon.1exon
CmaCh16G001980.1.exon.2CmaCh16G001980.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G001980.1.five_prime_UTR.1CmaCh16G001980.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G001980.1.CDS.1CmaCh16G001980.1.CDS.1CDS
CmaCh16G001980.1.CDS.2CmaCh16G001980.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G001980.1.three_prime_UTR.1CmaCh16G001980.1.three_prime_UTR.1three_prime_UTR