CmoCh16G002140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G002140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr16 : 943159 .. 943590 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTATTTTGTTTGCCCACAAAATGGCTGCCAAGAGATATTTCATGTGGCAAATAGTTTTGGTTCTAATAGCCATTCTGGCTCAACGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTGTAAGTGGATCCTACCCATTTAAAACAATTTCAGACAACACAATTTCTAGGTACCCATGAATCTAATTACTTGTTTGTTTGTTCTTACGATGTTTTCAGACAAGGATGTTGTGGGAATCAAGAACATAAGAAAGGTTGGTCGACCCATCCCAAGGAAAGATAAGCCAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTTTTTACCTATAACTAGTTTCTATTTCCAATCTCCTTTATCCACATGAAGTGATATTAATAAACATTACTACTTCCCTTTCCCTA

mRNA sequence

TTAGTATTTTGTTTGCCCACAAAATGGCTGCCAAGAGATATTTCATGTGGCAAATAGTTTTGGTTCTAATAGCCATTCTGGCTCAACGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAAGGTTGGTCGACCCATCCCAAGGAAAGATAAGCCAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTTTTTACCTATAACTAGTTTCTATTTCCAATCTCCTTTATCCACATGAAGTGATATTAATAAACATTACTACTTCCCTTTCCCTA

Coding sequence (CDS)

ATGGCTGCCAAGAGATATTTCATGTGGCAAATAGTTTTGGTTCTAATAGCCATTCTGGCTCAACGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAAGGTTGGTCGACCCATCCCAAGGAAAGATAAGCCAAGGGGTGGCAATTTCTAA

Homology

[Close]

BLAST of CmoCh16G002140 vs. TrEMBL
Match: A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-13
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MAAKRYFMWQIVLVLIAILAQRVAPRHLGSAPLTAYKDVVGIKNIRKVGRPIPRKDKPRG 60
          MA+K   +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I+KV +P+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

[Close]

BLAST of CmoCh16G002140 vs. NCBI nr
Match: gi|700197981|gb|KGN53139.1| (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-13
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MAAKRYFMWQIVLVLIAILAQRVAPRHLGSAPLTAYKDVVGIKNIRKVGRPIPRKDKPRG 60
          MA+K   +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I+KV +P+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:

BLAST of CmoCh16G002140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G002140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW87_CUCSA	4.8e-13	61.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1	[more]

BLAST of CmoCh16G002140 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh16G002140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197981\|gb\|KGN53139.1\|	6.8e-13	61.90	hypothetical protein Csa_4G022260 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002140.1	CmoCh16G002140.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G002140	CmaCh16G001980	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G002140	MELO3C032836.2	Melon (DHL92) v3.6.1	cmomedB343
CmoCh16G002140	CsaV3_4G003960	Cucumber (Chinese Long) v3	cmocucB0384
CmoCh16G002140	Cla97C07G143770	Watermelon (97103) v2	cmowmbB337
CmoCh16G002140	Bhi01G002017	Wax gourd	cmowgoB0430
CmoCh16G002140	CsGy4G003800	Cucumber (Gy14) v2	cgybcmoB464

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G002140	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G002140	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G002140	Wild cucumber (PI 183967)	cmocpiB328
CmoCh16G002140	Cucumber (Chinese Long) v2	cmocuB321
CmoCh16G002140	Watermelon (Charleston Gray)	cmowcgB295
CmoCh16G002140	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G002140	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G002140	Silver-seed gourd	carcmoB0509
CmoCh16G002140	Silver-seed gourd	carcmoB1175