Cla021761 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021761
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 5970345 .. 5970593 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

mRNA sequence

ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

Coding sequence (CDS)

ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

Protein sequence

MAARKDLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCDQLAKAHGGMIIKDWGGKRVNKAL

Homology

[Close]

BLAST of Cla021761 vs. TrEMBL
Match: A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-26
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 1  MAARK-DLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCD 60
          MAAR  DL RIGLEGF  IEE YDRPRR+P+  AP  PQPV  + PPQR VE SP IRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGMIIKDWGGKRVNKAL 83
          QLAKAHGG+IIK+WGGKRVNK +
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVV 83

[Close]

BLAST of Cla021761 vs. TrEMBL
Match: A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.1e-13
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 3  ARKDLTRIGLEGFAIIEEHYDR--PRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCDQ 62
          +R DL +IGLEGFA+IEE Y +  P+RRP+  A   PQ +  + PPQRM E SPPIRC+Q
Sbjct: 8  SRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQ 67

Query: 63 LAKAHGG 68
          LAK H G
Sbjct: 68 LAKTHEG 74

[Close]

BLAST of Cla021761 vs. NCBI nr
Match: gi|700202002|gb|KGN57135.1| (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 9.2e-26
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 1  MAARK-DLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCD 60
          MAAR  DL RIGLEGF  IEE YDRPRR+P+  AP  PQPV  + PPQR VE SP IRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGMIIKDWGGKRVNKAL 83
          QLAKAHGG+IIK+WGGKRVNK +
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVV 83

[Close]

BLAST of Cla021761 vs. NCBI nr
Match: gi|700202001|gb|KGN57134.1| (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 3  ARKDLTRIGLEGFAIIEEHYDR--PRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCDQ 62
          +R DL +IGLEGFA+IEE Y +  P+RRP+  A   PQ +  + PPQRM E SPPIRC+Q
Sbjct: 8  SRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQ 67

Query: 63 LAKAHGG 68
          LAK H G
Sbjct: 68 LAKTHEG 74

The following BLAST results are available for this feature:

BLAST of Cla021761 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5A8_CUCSA	6.4e-26	72.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1	[more]
A0A0A0L7Z0_CUCSA	8.1e-13	58.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1	[more]

BLAST of Cla021761 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202002\|gb\|KGN57135.1\|	9.2e-26	72.29	hypothetical protein Csa_3G164540 [Cucumis sativus]	[more]
gi\|700202001\|gb\|KGN57134.1\|	1.2e-12	58.21	hypothetical protein Csa_3G164530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU62692	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021761	Cla021761.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU62692	WMU62692	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021761	Cla97C05G087830	Watermelon (97103) v2	wmwmbB206
Cla021761	Csa3G164530	Cucumber (Chinese Long) v2	cuwmB233
Cla021761	MELO3C006685	Melon (DHL92) v3.5.1	mewmB461
Cla021761	CSPI03G14660	Wild cucumber (PI 183967)	cpiwmB231
Cla021761	Cucsa.252850	Cucumber (Gy14) v1	cgywmB479
Cla021761	Lsi05G015600	Bottle gourd (USVL1VR-Ls)	lsiwmB362
Cla021761	CsGy3G014800	Cucumber (Gy14) v2	cgybwmB217
Cla021761	MELO3C006685.2	Melon (DHL92) v3.6.1	medwmB447
Cla021761	CsaV3_3G014890	Cucumber (Chinese Long) v3	cucwmB239
Cla021761	Bhi01G000745	Wax gourd	wgowmB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021761	Cucurbita pepo (Zucchini)	cpewmB152
Cla021761	Cucurbita pepo (Zucchini)	cpewmB153
Cla021761	Cucurbita pepo (Zucchini)	cpewmB329
Cla021761	Cucurbita pepo (Zucchini)	cpewmB613
Cla021761	Cucurbita pepo (Zucchini)	cpewmB845
Cla021761	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021761	Cucumber (Gy14) v2	cgybwmB041
Cla021761	Cucumber (Gy14) v2	cgybwmB464
Cla021761	Melon (DHL92) v3.6.1	medwmB094
Cla021761	Melon (DHL92) v3.6.1	medwmB271
Cla021761	Silver-seed gourd	carwmB0070
Cla021761	Silver-seed gourd	carwmB0269
Cla021761	Silver-seed gourd	carwmB0700
Cla021761	Cucumber (Chinese Long) v3	cucwmB046
Cla021761	Cucumber (Chinese Long) v3	cucwmB522
Cla021761	Watermelon (97103) v2	wmwmbB217
Cla021761	Wax gourd	wgowmB069
Cla021761	Watermelon (97103) v1	wmwmB022
Cla021761	Watermelon (97103) v1	wmwmB138
Cla021761	Cucumber (Gy14) v1	cgywmB068
Cla021761	Cucumber (Gy14) v1	cgywmB405
Cla021761	Cucurbita maxima (Rimu)	cmawmB002
Cla021761	Cucurbita maxima (Rimu)	cmawmB345
Cla021761	Cucurbita maxima (Rimu)	cmawmB242
Cla021761	Cucurbita maxima (Rimu)	cmawmB344
Cla021761	Cucurbita maxima (Rimu)	cmawmB798
Cla021761	Cucurbita maxima (Rimu)	cmawmB869
Cla021761	Cucurbita moschata (Rifu)	cmowmB231
Cla021761	Cucurbita moschata (Rifu)	cmowmB341
Cla021761	Cucurbita moschata (Rifu)	cmowmB793
Cla021761	Cucurbita moschata (Rifu)	cmowmB856
Cla021761	Melon (DHL92) v3.5.1	mewmB096
Cla021761	Watermelon (Charleston Gray)	wcgwmB286
Cla021761	Watermelon (Charleston Gray)	wcgwmB332
Cla021761	Cucumber (Chinese Long) v2	cuwmB497
Cla021761	Cucumber (Chinese Long) v2	cuwmB588