MELO3C006685 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006685
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA polymerase II-associated factor 1 homolog
Locationchr6 : 5047336 .. 5047930 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCCCAAACTAAAATACTAACCTTGAGAACACACAAGTCATAAGTACTATTGTGCCATGGCAGCTCGTAAGGATCTAGCTCGTAACGATCTTGCTAGAATTGGAGTGGAAGCATTTGCCCTCATAGAAGAACACTATGATCGGCCGAGGAGGAGGCCGAGGCAAGTTGTTCCAGCTCCGCCACAACCAGTCGTAGCAATTCAACCTCCAAAAAGGATGGTCGAATCATCACCACCAATTCGTTGTGATCAATTGGCGAAAGCTCATGGAGGTATTATCATTAAAGAATGGGGTGGAAAGCGAGTTAACAAGGTTGTTTGATGTTGTTGAGTTCAAACAAAATAGAAAGATCCATTAACCATGAAGCTTAAAGTGATATGGTAACTCTTTATTTAGTCCAAAGTGTATATTATATACAAATATGTTTCGATTTGGCATGTTCTAGTTTCTATGTTTGTGTGAAGCAAGCTTGTAAAGAGTCTTGTAAAACTCTTATAATGGCTCTGCTTGTAATACAAAGTTATCAACTAAGAAACTTACTTTGCTATCCTCTAGTGTTGCAACTTTTCACTATATATGTTTCTTTTTTCTTTTC

mRNA sequence

ATCCCCAAACTAAAATACTAACCTTGAGAACACACAAGTCATAAGTACTATTGTGCCATGGCAGCTCGTAAGGATCTAGCTCGTAACGATCTTGCTAGAATTGGAGTGGAAGCATTTGCCCTCATAGAAGAACACTATGATCGGCCGAGGAGGAGGCCGAGGCAAGTTGTTCCAGCTCCGCCACAACCAGTCGTAGCAATTCAACCTCCAAAAAGGATGGTCGAATCATCACCACCAATTCGTTGTGATCAATTGGCGAAAGCTCATGGAGGTATTATCATTAAAGAATGGGGTGGAAAGCGAGTTAACAAGGTTGTTTGATGTTGTTGAGTTCAAACAAAATAGAAAGATCCATTAACCATGAAGCTTAAAGTGATATGGTAACTCTTTATTTAGTCCAAAGTGTATATTATATACAAATATGTTTCGATTTGGCATGTTCTAGTTTCTATGTTTGTGTGAAGCAAGCTTGTAAAGAGTCTTGTAAAACTCTTATAATGGCTCTGCTTGTAATACAAAGTTATCAACTAAGAAACTTACTTTGCTATCCTCTAGTGTTGCAACTTTTCACTATATATGTTTCTTTTTTCTTTTC

Coding sequence (CDS)

ATGGCAGCTCGTAAGGATCTAGCTCGTAACGATCTTGCTAGAATTGGAGTGGAAGCATTTGCCCTCATAGAAGAACACTATGATCGGCCGAGGAGGAGGCCGAGGCAAGTTGTTCCAGCTCCGCCACAACCAGTCGTAGCAATTCAACCTCCAAAAAGGATGGTCGAATCATCACCACCAATTCGTTGTGATCAATTGGCGAAAGCTCATGGAGGTATTATCATTAAAGAATGGGGTGGAAAGCGAGTTAACAAGGTTGTTTGA

Protein sequence

MAARKDLARNDLARIGVEAFALIEEHYDRPRRRPRQVVPAPPQPVVAIQPPKRMVESSPPIRCDQLAKAHGGIIIKEWGGKRVNKVV*
Homology
[Close]
BLAST of MELO3C006685 vs. TrEMBL
Match: A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-30
Identity = 70/87 (80.46%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 1  MAARKDLARNDLARIGVEAFALIEEHYDRPRRRPRQVVPAPPQPVVAIQPPKRMVESSPP 60
          MAAR     NDLARIG+E F  IEE YDRPRR+PR V PAPPQPVVAI PP+R VESSP 
Sbjct: 1  MAAR----NNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPS 60

Query: 61 IRCDQLAKAHGGIIIKEWGGKRVNKVV 88
          IRCDQLAKAHGGIIIKEWGGKRVNKVV
Sbjct: 61 IRCDQLAKAHGGIIIKEWGGKRVNKVV 83

[Close]
BLAST of MELO3C006685 vs. TrEMBL
Match: A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1  MAARKDLARNDLARIGVEAFALIEEHYDR--PRRRPRQVVPAPPQPVVAIQPPKRMVESS 60
          MAA +DL+RNDL +IG+E FALIEE Y +  P+RRPRQV  APPQ ++AI PP+RM ESS
Sbjct: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESS 60

Query: 61 PPIRCDQLAKAHGG 73
          PPIRC+QLAK H G
Sbjct: 61 PPIRCNQLAKTHEG 74

[Close]
BLAST of MELO3C006685 vs. NCBI nr
Match: gi|700202002|gb|KGN57135.1| (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-30
Identity = 70/87 (80.46%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 1  MAARKDLARNDLARIGVEAFALIEEHYDRPRRRPRQVVPAPPQPVVAIQPPKRMVESSPP 60
          MAAR     NDLARIG+E F  IEE YDRPRR+PR V PAPPQPVVAI PP+R VESSP 
Sbjct: 1  MAAR----NNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPS 60

Query: 61 IRCDQLAKAHGGIIIKEWGGKRVNKVV 88
          IRCDQLAKAHGGIIIKEWGGKRVNKVV
Sbjct: 61 IRCDQLAKAHGGIIIKEWGGKRVNKVV 83

[Close]
BLAST of MELO3C006685 vs. NCBI nr
Match: gi|700202001|gb|KGN57134.1| (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1  MAARKDLARNDLARIGVEAFALIEEHYDR--PRRRPRQVVPAPPQPVVAIQPPKRMVESS 60
          MAA +DL+RNDL +IG+E FALIEE Y +  P+RRPRQV  APPQ ++AI PP+RM ESS
Sbjct: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESS 60

Query: 61 PPIRCDQLAKAHGG 73
          PPIRC+QLAK H G
Sbjct: 61 PPIRCNQLAKTHEG 74

The following BLAST results are available for this feature:
BLAST of MELO3C006685 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5A8_CUCSA1.2e-3080.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1[more]
A0A0A0L7Z0_CUCSA1.6e-1967.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1[more]
BLAST of MELO3C006685 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202002|gb|KGN57135.1|1.7e-3080.46hypothetical protein Csa_3G164540 [Cucumis sativus][more]
gi|700202001|gb|KGN57134.1|2.3e-1967.57hypothetical protein Csa_3G164530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45087melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006685T1MELO3C006685T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45087MU45087transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006685Csa3G164530Cucumber (Chinese Long) v2cumeB236
MELO3C006685Cla021761Watermelon (97103) v1mewmB461
MELO3C006685Cla97C05G087830Watermelon (97103) v2mewmbB434
MELO3C006685Bhi01G000745Wax gourdmewgoB529
MELO3C006685CSPI03G14660Wild cucumber (PI 183967)cpimeB230
MELO3C006685Cucsa.252850Cucumber (Gy14) v1cgymeB439
MELO3C006685Lsi05G015600Bottle gourd (USVL1VR-Ls)lsimeB369
MELO3C006685CsGy3G014800Cucumber (Gy14) v2cgybmeB200
MELO3C006685CsaV3_3G014890Cucumber (Chinese Long) v3cucmeB236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006685Silver-seed gourdcarmeB0074
MELO3C006685Silver-seed gourdcarmeB0280
MELO3C006685Silver-seed gourdcarmeB0701
MELO3C006685Cucumber (Chinese Long) v3cucmeB509
MELO3C006685Watermelon (97103) v2mewmbB448
MELO3C006685Wax gourdmewgoB521
MELO3C006685Melon (DHL92) v3.5.1memeB051
MELO3C006685Melon (DHL92) v3.5.1memeB113
MELO3C006685Cucumber (Gy14) v1cgymeB070
MELO3C006685Cucurbita maxima (Rimu)cmameB001
MELO3C006685Cucurbita maxima (Rimu)cmameB242
MELO3C006685Cucurbita maxima (Rimu)cmameB342
MELO3C006685Cucurbita maxima (Rimu)cmameB763
MELO3C006685Cucurbita maxima (Rimu)cmameB850
MELO3C006685Cucurbita moschata (Rifu)cmomeB230
MELO3C006685Cucurbita moschata (Rifu)cmomeB335
MELO3C006685Cucurbita moschata (Rifu)cmomeB832
MELO3C006685Cucurbita moschata (Rifu)cmomeB755
MELO3C006685Wild cucumber (PI 183967)cpimeB080
MELO3C006685Wild cucumber (PI 183967)cpimeB500
MELO3C006685Cucumber (Chinese Long) v2cumeB497
MELO3C006685Watermelon (Charleston Gray)mewcgB427
MELO3C006685Watermelon (Charleston Gray)mewcgB442
MELO3C006685Watermelon (97103) v1mewmB486
MELO3C006685Cucurbita pepo (Zucchini)cpemeB140
MELO3C006685Cucurbita pepo (Zucchini)cpemeB144
MELO3C006685Cucurbita pepo (Zucchini)cpemeB314
MELO3C006685Cucurbita pepo (Zucchini)cpemeB585
MELO3C006685Cucurbita pepo (Zucchini)cpemeB813
MELO3C006685Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006685Cucumber (Gy14) v2cgybmeB070
MELO3C006685Cucumber (Gy14) v2cgybmeB438