CSPI03G14660 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G14660
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 10927984 .. 10928794 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAAAGTCTAAAGATTCCACAAATAATTTGAAAGAATAATAATCTTTCAAAACCATTATTCTTAGTAGAACAAATTCCAATTTTCTTAGCTTATTGAGAGATAAAAGTAATTTCCAACAAATTGGTAAGCCCAACCATTTCCAAAGTTTTTCTTTTTATATATATAAATAGTGGTTCATCTTCTTCATTTTCTATCCCCAAACCAAGAAAACCTAACCTTGAGAACACACAAAGTGCCATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAACCGTGAAGTTTGGAGTGATATGAGTGATATGGTAACTCTTTGTTTAATCCAAAGTGTATATTATATATGTATGTACGTATATTTCCATTTGGCCCTGTTGTTCTAGTTTCAATGTTTGTGTGAAGCAAGCTTGTAAAACTTATAATGGCTCTGCTTGTAATACAAAGTTATCAACTAAGAAACAAACTTTGCTATGCCTATTTGCAACTTTTCATTGTATGTTTCTTTGAAGTCTAATTGACAAGCAGAGTTGGAAACGAATGAAAGAGGGATCATTTTTCAATTTTCAAGTATTTCAGGAT

mRNA sequence

ATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAA

Coding sequence (CDS)

ATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAA

Homology

[Close]

BLAST of CSPI03G14660 vs. TrEMBL
Match: A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60
          MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 90
          QLAKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]

BLAST of CSPI03G14660 vs. TrEMBL
Match: A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-15
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++AIHPPQR  ESSP IRC+QLA
Sbjct: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLA 69

Query: 66 KAHGG 69
          K H G
Sbjct: 70 KTHEG 74

[Close]

BLAST of CSPI03G14660 vs. NCBI nr
Match: gi|700202002|gb|KGN57135.1| (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60
          MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 90
          QLAKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]

BLAST of CSPI03G14660 vs. NCBI nr
Match: gi|700202001|gb|KGN57134.1| (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++AIHPPQR  ESSP IRC+QLA
Sbjct: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLA 69

Query: 66 KAHGG 69
          K H G
Sbjct: 70 KTHEG 74

The following BLAST results are available for this feature:

BLAST of CSPI03G14660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G14660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5A8_CUCSA	1.5e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1	[more]
A0A0A0L7Z0_CUCSA	1.5e-15	66.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1	[more]

BLAST of CSPI03G14660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G14660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202002\|gb\|KGN57135.1\|	2.2e-44	100.00	hypothetical protein Csa_3G164540 [Cucumis sativus]	[more]
gi\|700202001\|gb\|KGN57134.1\|	2.1e-15	66.15	hypothetical protein Csa_3G164530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G14660.1	CSPI03G14660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G14660	Cla021761	Watermelon (97103) v1	cpiwmB231
CSPI03G14660	MELO3C006685	Melon (DHL92) v3.5.1	cpimeB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G14660	Cucurbita pepo (Zucchini)	cpecpiB133
CSPI03G14660	Cucurbita pepo (Zucchini)	cpecpiB140
CSPI03G14660	Cucurbita pepo (Zucchini)	cpecpiB307
CSPI03G14660	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G14660	Cucurbita pepo (Zucchini)	cpecpiB861
CSPI03G14660	Bottle gourd (USVL1VR-Ls)	cpilsiB149
CSPI03G14660	Bottle gourd (USVL1VR-Ls)	cpilsiB198
CSPI03G14660	Melon (DHL92) v3.6.1	cpimedB165
CSPI03G14660	Melon (DHL92) v3.6.1	cpimedB185
CSPI03G14660	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G14660	Cucumber (Gy14) v2	cgybcpiB024
CSPI03G14660	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G14660	Cucumber (Gy14) v2	cgybcpiB270
CSPI03G14660	Silver-seed gourd	carcpiB0075
CSPI03G14660	Silver-seed gourd	carcpiB0310
CSPI03G14660	Silver-seed gourd	carcpiB0738
CSPI03G14660	Cucumber (Chinese Long) v3	cpicucB132
CSPI03G14660	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G14660	Cucumber (Chinese Long) v3	cpicucB185
CSPI03G14660	Watermelon (97103) v2	cpiwmbB209
CSPI03G14660	Watermelon (97103) v2	cpiwmbB239
CSPI03G14660	Wax gourd	cpiwgoB259
CSPI03G14660	Wax gourd	cpiwgoB269
CSPI03G14660	Wild cucumber (PI 183967)	cpicpiB021
CSPI03G14660	Wild cucumber (PI 183967)	cpicpiB135
CSPI03G14660	Cucumber (Gy14) v1	cgycpiB064
CSPI03G14660	Cucumber (Gy14) v1	cgycpiB383
CSPI03G14660	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G14660	Cucurbita maxima (Rimu)	cmacpiB359
CSPI03G14660	Cucurbita maxima (Rimu)	cmacpiB367
CSPI03G14660	Cucurbita maxima (Rimu)	cmacpiB826
CSPI03G14660	Cucurbita maxima (Rimu)	cmacpiB903
CSPI03G14660	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G14660	Cucurbita moschata (Rifu)	cmocpiB352
CSPI03G14660	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G14660	Cucurbita moschata (Rifu)	cmocpiB883
CSPI03G14660	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G14660	Cucumber (Chinese Long) v2	cpicuB158
CSPI03G14660	Melon (DHL92) v3.5.1	cpimeB174
CSPI03G14660	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G14660	Watermelon (Charleston Gray)	cpiwcgB255
CSPI03G14660	Watermelon (97103) v1	cpiwmB281