Cla97C05G087830 (gene) Watermelon (97103) v2

Overview
NameCla97C05G087830
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 5946564 .. 5946812 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

mRNA sequence

ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

Coding sequence (CDS)

ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

Protein sequence

MAARKDLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCDQLAKAHGGMIIKDWGGKRVNKAL
Homology
[Close]
BLAST of Cla97C05G087830 vs. NCBI nr
Match: KGN57135.1 (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 5.2e-25
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 1  MAAR-KDLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCD 60
          MAAR  DL RIGLEGF  IEE YDRPRR+P+  AP  PQPV  + PPQR VE SP IRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGMIIKDWGGKRVNKAL 83
          QLAKAHGG+IIK+WGGKRVNK +
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVV 83

[Close]
BLAST of Cla97C05G087830 vs. TrEMBL
Match: tr|A0A0A0L5A8|A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 1  MAAR-KDLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCD 60
          MAAR  DL RIGLEGF  IEE YDRPRR+P+  AP  PQPV  + PPQR VE SP IRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGMIIKDWGGKRVNKAL 83
          QLAKAHGG+IIK+WGGKRVNK +
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVV 83

The following BLAST results are available for this feature:
BLAST of Cla97C05G087830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57135.15.2e-2572.29hypothetical protein Csa_3G164540 [Cucumis sativus][more]
BLAST of Cla97C05G087830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5A8|A0A0A0L5A8_CUCSA3.4e-2572.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1[more]
BLAST of Cla97C05G087830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G087830 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G087830.1Cla97C05G087830.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..53

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G087830Cla021761Watermelon (97103) v1wmwmbB206
Cla97C05G087830Csa3G164530Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G087830MELO3C006685Melon (DHL92) v3.5.1mewmbB434
Cla97C05G087830CSPI03G14650Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G087830Cucsa.252850Cucumber (Gy14) v1cgywmbB452
Cla97C05G087830Lsi05G015600Bottle gourd (USVL1VR-Ls)lsiwmbB330
Cla97C05G087830CsGy3G014800Cucumber (Gy14) v2cgybwmbB196
Cla97C05G087830MELO3C006685.2Melon (DHL92) v3.6.1medwmbB423
Cla97C05G087830CsaV3_3G014890Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G087830Bhi01G000745Wax gourdwgowmbB178
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G087830Watermelon (97103) v2wmbwmbB137
Cla97C05G087830Watermelon (97103) v2wmbwmbB155
Cla97C05G087830Silver-seed gourdcarwmbB0069
Cla97C05G087830Silver-seed gourdcarwmbB0113
Cla97C05G087830Silver-seed gourdcarwmbB0287
Cla97C05G087830Silver-seed gourdcarwmbB0734
Cla97C05G087830Cucumber (Gy14) v2cgybwmbB442
Cla97C05G087830Cucumber (Gy14) v2cgybwmbB510
Cla97C05G087830Cucumber (Gy14) v1cgywmbB066
Cla97C05G087830Cucurbita maxima (Rimu)cmawmbB001
Cla97C05G087830Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G087830Cucurbita maxima (Rimu)cmawmbB366
Cla97C05G087830Cucurbita maxima (Rimu)cmawmbB368
Cla97C05G087830Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G087830Cucurbita maxima (Rimu)cmawmbB914
Cla97C05G087830Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G087830Cucurbita moschata (Rifu)cmowmbB351
Cla97C05G087830Cucurbita moschata (Rifu)cmowmbB353
Cla97C05G087830Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G087830Cucurbita moschata (Rifu)cmowmbB887
Cla97C05G087830Wild cucumber (PI 183967)cpiwmbB490
Cla97C05G087830Wild cucumber (PI 183967)cpiwmbB564
Cla97C05G087830Cucumber (Chinese Long) v3cucwmbB483
Cla97C05G087830Cucumber (Chinese Long) v2cuwmbB465
Cla97C05G087830Cucumber (Chinese Long) v2cuwmbB539
Cla97C05G087830Bottle gourd (USVL1VR-Ls)lsiwmbB015
Cla97C05G087830Bottle gourd (USVL1VR-Ls)lsiwmbB188
Cla97C05G087830Melon (DHL92) v3.6.1medwmbB114
Cla97C05G087830Melon (DHL92) v3.5.1mewmbB123
Cla97C05G087830Watermelon (Charleston Gray)wcgwmbB022
Cla97C05G087830Watermelon (Charleston Gray)wcgwmbB189
Cla97C05G087830Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G087830Watermelon (Charleston Gray)wcgwmbB269
Cla97C05G087830Watermelon (97103) v1wmwmbB027
Cla97C05G087830Watermelon (97103) v1wmwmbB136
Cla97C05G087830Watermelon (97103) v1wmwmbB402
Cla97C05G087830Wax gourdwgowmbB079