CsaV3_3G014890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G014890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 11043413 .. 11043694 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCACAGAGATCTATCTCGTAATGATCTCCCTAAAATTGGATTGGAAGGCTTTGCCCTTATAGAAGAAATCTACTGCAAACGACTACCAAAGAGGAGACCAAGGCAAGTTGCTCTAGCTCCACCACAATCAATCATAGCAATTCATCCTCCACAAAGGATGGCCGAGTCATCACCGCCTATTCGTTGTAATCAATTGGCTAAAACTCACGAAGGTGAAAGCAAGTCATAGAGGAATCTATTAAACCATGAAAATTTAGAGTCATATGGTAACTCT

mRNA sequence

ATGGCAGCTCACAGAGATCTATCTCGTAATGATCTCCCTAAAATTGGATTGGAAGGCTTTGCCCTTATAGAAGAAATCTACTGCAAACGACTACCAAAGAGGAGACCAAGGCAAGTTGCTCTAGCTCCACCACAATCAATCATAGCAATTCATCCTCCACAAAGGATGGCCGAGTCATCACCGCCTATTCGTTGTAATCAATTGGCTAAAACTCACGAAGGTGAAAGCAAGTCATAG

Coding sequence (CDS)

ATGGCAGCTCACAGAGATCTATCTCGTAATGATCTCCCTAAAATTGGATTGGAAGGCTTTGCCCTTATAGAAGAAATCTACTGCAAACGACTACCAAAGAGGAGACCAAGGCAAGTTGCTCTAGCTCCACCACAATCAATCATAGCAATTCATCCTCCACAAAGGATGGCCGAGTCATCACCGCCTATTCGTTGTAATCAATTGGCTAAAACTCACGAAGGTGAAAGCAAGTCATAG

Protein sequence

MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLAKTHEGESKS
Homology
[Close]
BLAST of CsaV3_3G014890 vs. NCBI nr
Match: KGN57134.1 (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60
          MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX
Sbjct: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60

Query: 61 XXXXCNQLAKTHEGESKS 79
          XXXXCNQLAKTHEGESKS
Sbjct: 61 XXXXCNQLAKTHEGESKS 78

[Close]
BLAST of CsaV3_3G014890 vs. NCBI nr
Match: KGN57135.1 (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXXXXXXCNQLA 69
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++                C+QLA
Sbjct: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65

Query: 70 KTHEG 75
          K H G
Sbjct: 66 KAHGG 68

[Close]
BLAST of CsaV3_3G014890 vs. TrEMBL
Match: tr|A0A0A0L7Z0|A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.7e-26
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60
          MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX
Sbjct: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60

Query: 61 XXXXCNQLAKTHEGESKS 79
          XXXXCNQLAKTHEGESKS
Sbjct: 61 XXXXCNQLAKTHEGESKS 78

[Close]
BLAST of CsaV3_3G014890 vs. TrEMBL
Match: tr|A0A0A0L5A8|A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXXXXXXCNQLA 69
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++                C+QLA
Sbjct: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65

Query: 70 KTHEG 75
          K H G
Sbjct: 66 KAHGG 68

The following BLAST results are available for this feature:
BLAST of CsaV3_3G014890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57134.11.3e-25100.00hypothetical protein Csa_3G164530 [Cucumis sativus][more]
KGN57135.12.3e-0646.15hypothetical protein Csa_3G164540 [Cucumis sativus][more]
BLAST of CsaV3_3G014890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7Z0|A0A0A0L7Z0_CUCSA8.7e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164530 PE=4 SV=1[more]
tr|A0A0A0L5A8|A0A0A0L5A8_CUCSA1.5e-0646.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G014890.1CsaV3_3G014890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G014890CSPI03G14650Wild cucumber (PI 183967)cpicucB144
CsaV3_3G014890Cucsa.252850Cucumber (Gy14) v1cgycucB387
CsaV3_3G014890CsGy3G014800Cucumber (Gy14) v2cgybcucB117
CsaV3_3G014890Cla021761Watermelon (97103) v1cucwmB239
CsaV3_3G014890MELO3C006685Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G014890Lsi05G015600Bottle gourd (USVL1VR-Ls)cuclsiB218
CsaV3_3G014890MELO3C006685.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G014890Cla97C05G087830Watermelon (97103) v2cucwmbB206
CsaV3_3G014890Bhi01G000745Wax gourdcucwgoB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G014890Wax gourdcucwgoB262
CsaV3_3G014890Cucumber (Chinese Long) v3cuccucB026
CsaV3_3G014890Cucumber (Chinese Long) v3cuccucB148
CsaV3_3G014890Silver-seed gourdcarcucB0079
CsaV3_3G014890Silver-seed gourdcarcucB0309
CsaV3_3G014890Silver-seed gourdcarcucB0741
CsaV3_3G014890Cucumber (Gy14) v2cgybcucB030
CsaV3_3G014890Cucumber (Gy14) v2cgybcucB276
CsaV3_3G014890Cucumber (Gy14) v1cgycucB066
CsaV3_3G014890Cucurbita maxima (Rimu)cmacucB0001
CsaV3_3G014890Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G014890Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G014890Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G014890Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G014890Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G014890Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G014890Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G014890Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G014890Cucurbita pepo (Zucchini)cpecucB0154
CsaV3_3G014890Cucurbita pepo (Zucchini)cpecucB0379
CsaV3_3G014890Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G014890Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G014890Wild cucumber (PI 183967)cpicucB033
CsaV3_3G014890Wild cucumber (PI 183967)cpicucB344
CsaV3_3G014890Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G014890Melon (DHL92) v3.5.1cucmeB176
CsaV3_3G014890Melon (DHL92) v3.5.1cucmeB198
CsaV3_3G014890Melon (DHL92) v3.6.1cucmedB167
CsaV3_3G014890Melon (DHL92) v3.6.1cucmedB189
CsaV3_3G014890Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G014890Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G014890Watermelon (97103) v1cucwmB288
CsaV3_3G014890Watermelon (97103) v2cucwmbB233